Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

21174112 .. 21185677

Gene Structure 11566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGACAACCAAATGCCTCGGTTTCCTTTTGGTCATTGTTTTGCTCAACTCCACAATTCTTGGGGAAAGTGCTCGACGTTTCGATATTATAAAGCACCGCAACTTGTGTCGTGGAGCAATCGGGGGTTTCTTTGACGGCTTATGTCTCGGATCGATCAAGGAGTCGGGTCCTAGCCCGGGTCAAGGGAACAAGTTCAATGACAACCAAACCCTTGGAGGAAGAAAGGTTTCCGGCCCTAGCCCTACCAAAGTCACAAATGTTAAGACACTCGAAGGGGTTAAGGATTCCGGCCCAAGCCCTGGTACGGGACACAAATTTACAAATGTTGAGACCCTCGGAGGGATTAAGGATGCTGGCCTCAGCCCTGATACAAGAAACTCATTCACGAATATAGATATTCTTAGAGGGATTAAGGATGGCCCAAGCCCTGGTACAGGAAACTCATTTACAAATGTAGATATTTTAGGAGGAATTAAGGATGGGCCAAGCCCAGAAACGCGTGGAACTTGGGCCAGAATCAGCTCAATGACCATCAGCAATACCCCCTACCAAAAACCCCAATACAAACCTCTCAATAAGAAACTGAATCACCTCCCCAACGCCGCGCCGCCGCTTCGCCAGCTCCTAGAACCCAATTCTCTCCACTCTCTCCTAATGCATCCCAACCATCAATTCCCCACCACCATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

24.59

Weight (kDa)

9.74

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccB7I	CCANNNNNTGG	2 cut(s)	299, 428
AccII	CGCG	2 cut(s)	499, 605
AciI	CCGC	4 cut(s)	97, 603, 608, 611
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	2 cut(s)	304, 433
AfiI	CCNNNNNNNGG	8 cut(s)	176, 182, 299, 304, 305, 339, 428, 434
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	298, 427
AjuI	GAANNNNNNNTTGG	2 cut(s)	656, 688
AluBI	AGCT	2 cut(s)	522, 622
AluI	AGCT	2 cut(s)	522, 622
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	149, 323
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	6 cut(s)	232, 289, 355, 418, 482, 510
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	2 cut(s)	191, 226
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	6 cut(s)	167, 233, 290, 419, 482, 510
AsuC2I	CCSGG	2 cut(s)	176, 177
AsuHPI	GGTGA	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	359
BccI	CCATC	4 cut(s)	410, 473, 539, 675
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	300, 429
BcnI	CCSGG	2 cut(s)	176, 177
BcoDI	GTCTC	2 cut(s)	149, 323
BfaI	CTAG	3 cut(s)	171, 237, 626
BisI	GCNGC	3 cut(s)	603, 608, 611
BlsI	GCNGC	3 cut(s)	604, 609, 612
Bme1390I	CCNGG	4 cut(s)	176, 177, 300, 429
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	6 cut(s)	167, 233, 290, 419, 482, 510
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	4 cut(s)	176, 177, 300, 429
BmsI	GCATC	2 cut(s)	340, 667
Bpu10I	CCTNAGC	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	176, 177
Bsa29I	ATCGAT	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	6 cut(s)	16, 175, 211, 298, 334, 427
Bsc4I	CCNNNNNNNGG	8 cut(s)	176, 182, 299, 304, 305, 339, 428, 434
BseBI	CCWGG	2 cut(s)	300, 429
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	6 cut(s)	16, 175, 211, 298, 334, 427
BseGI	GGATG	4 cut(s)	355, 421, 484, 658
BseLI	CCNNNNNNNGG	8 cut(s)	176, 182, 299, 304, 305, 339, 428, 434
BseMII	CTCAG	1 cut(s)	373
Bsh1236I	CGCG	2 cut(s)	499, 605
BshFI	GGCC	6 cut(s)	234, 291, 357, 420, 484, 512
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	176, 231, 288
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	8 cut(s)	176, 182, 299, 304, 305, 339, 428, 434
BsmAI	GTCTC	2 cut(s)	149, 323
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	6 cut(s)	234, 291, 357, 420, 484, 512
Bso31I	GGTCTC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	149, 153
BspACI	CCGC	4 cut(s)	97, 603, 608, 611
BspANI	GGCC	6 cut(s)	234, 291, 357, 420, 484, 512
BspCNI	CTCAG	1 cut(s)	372
BspDI	ATCGAT	1 cut(s)	152
BspFNI	CGCG	2 cut(s)	499, 605
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	323
BssECI	CCNNGG	6 cut(s)	16, 175, 211, 298, 334, 427
BssMI	GATC	2 cut(s)	149, 153
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	300, 429
BstC8I	GCNNGC	2 cut(s)	355, 620
BstDEI	CTNAG	2 cut(s)	359, 401
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstF5I	GGATG	4 cut(s)	355, 421, 484, 658
BstFNI	CGCG	2 cut(s)	499, 605
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	2 cut(s)	152, 156
BstMAI	GTCTC	2 cut(s)	149, 323
BstMBI	GATC	2 cut(s)	149, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNI	CCWGG	2 cut(s)	300, 429
BstSCI	CCNGG	4 cut(s)	174, 175, 298, 427
BstUI	CGCG	2 cut(s)	499, 605
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	152
BsuRI	GGCC	6 cut(s)	234, 291, 357, 420, 484, 512
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	4 cut(s)	355, 421, 484, 658
Cac8I	GCNNGC	2 cut(s)	355, 620
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	6 cut(s)	167, 233, 290, 419, 482, 510
Cfr9I	CCCGGG	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	303, 432
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviQI	GTAC	2 cut(s)	303, 432
DdeI	CTNAG	2 cut(s)	359, 401
DpnI	GATC	2 cut(s)	151, 155
DpnII	GATC	2 cut(s)	149, 153
Eco130I	CCWWGG	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	298, 427
EcoT14I	CCWWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	211
FaiI	YATR	3 cut(s)	89, 142, 392
FaqI	GGGAC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	603, 608, 611
FokI	GGATG	4 cut(s)	362, 428, 491, 645
Fsp4HI	GCNGC	3 cut(s)	603, 608, 611
FspBI	CTAG	3 cut(s)	171, 237, 626
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	3 cut(s)	603, 608, 611
HaeIII	GGCC	6 cut(s)	234, 291, 357, 420, 484, 512
HapII	CCGG	3 cut(s)	176, 231, 288
HhaI	GCGC	1 cut(s)	607
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HinfI	GANTC	4 cut(s)	161, 284, 516, 586
HpaII	CCGG	3 cut(s)	176, 231, 288
HphI	GGTGA	1 cut(s)	581
Hpy188I	TCNGA	2 cut(s)	149, 338
Hpy188III	TCNNGA	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	2 cut(s)	359, 401
HpySE526I	ACGT	1 cut(s)	76
HspAI	GCGC	1 cut(s)	605
Kzo9I	GATC	2 cut(s)	149, 153
LmnI	GCTCC	2 cut(s)	113, 627
LweI	GCATC	2 cut(s)	340, 667
MaeI	CTAG	3 cut(s)	171, 237, 626
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	2 cut(s)	151, 155
MboI	GATC	2 cut(s)	149, 153
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	5 cut(s)	54, 314, 471, 634, 671
MluI	ACGCGT	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	9 cut(s)	26, 209, 332, 344, 368, 398, 461, 579, 602
Mph1103I	ATGCAT	1 cut(s)	660
MroXI	GAANNNNTTC	2 cut(s)	191, 226
MseI	TTAA	5 cut(s)	261, 279, 345, 411, 474
MspI	CCGG	3 cut(s)	176, 231, 288
MspR9I	CCNGG	4 cut(s)	176, 177, 300, 429
MvaI	CCWGG	2 cut(s)	300, 429
MvnI	CGCG	2 cut(s)	499, 605
MwoI	GCNNNNNNNGC	1 cut(s)	619
NciI	CCSGG	2 cut(s)	176, 177
NdeII	GATC	2 cut(s)	149, 153
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	660
PdmI	GAANNNNTTC	2 cut(s)	191, 226
PfeI	GAWTC	3 cut(s)	284, 516, 586
PflMI	CCANNNNNTGG	2 cut(s)	299, 428
PkrI	GCNGC	3 cut(s)	604, 609, 612
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	298, 427
PspGI	CCWGG	2 cut(s)	298, 427
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	6 cut(s)	167, 233, 290, 419, 482, 510
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	304, 433
RsaNI	GTAC	2 cut(s)	303, 432
SaqAI	TTAA	5 cut(s)	261, 279, 345, 411, 474
SatI	GCNGC	3 cut(s)	603, 608, 611
Sau3AI	GATC	2 cut(s)	149, 153
Sau96I	GGNCC	6 cut(s)	167, 233, 290, 419, 482, 510
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	4 cut(s)	176, 177, 300, 429
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	6 cut(s)	79, 228, 524, 571, 594, 624
SfaNI	GCATC	2 cut(s)	340, 667
SinI	GGWCC	1 cut(s)	167
SmaI	CCCGGG	1 cut(s)	177
Sse9I	AATT	5 cut(s)	54, 314, 471, 634, 671
SsiI	CCGC	4 cut(s)	97, 603, 608, 611
SspMI	CTAG	3 cut(s)	171, 237, 626
StyD4I	CCNGG	4 cut(s)	174, 175, 298, 427
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	4 cut(s)	73, 81, 152, 270
TasI	AATT	5 cut(s)	54, 314, 471, 634, 671
TauI	GCSGC	3 cut(s)	605, 610, 613
TfiI	GAWTC	3 cut(s)	284, 516, 586
Tru1I	TTAA	5 cut(s)	261, 279, 345, 411, 474
Tru9I	TTAA	5 cut(s)	261, 279, 345, 411, 474
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspMI	CCCGGG	1 cut(s)	175
Van91I	CCANNNNNTGG	2 cut(s)	299, 428
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	432
XapI	RAATTY	1 cut(s)	314
XmaI	CCCGGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	191, 226
XspI	CTAG	3 cut(s)	171, 237, 626
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.