Rw6G006380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002124
Physical Location & Seq
Forward (+)
10136100 .. 10136372
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006380.1

Sequence Viewer

Length: 273 bp
ATGGCAACAAACCAACAAAGATTTGGTGCTCTTCTTCTTCTCCTTCTTTCCAGTTTTAGCCTTCTTCGCATCGAAGCAAGGCCATTACGCAGTTACAGAGGGATGGATGGTTTGCCATTTGGTATGGTGAAGAGTTCAGGGCCAAGCAAAGGTGGTGGAGGACACAGAAGAAGGGCTGCTCGGGTTCTGCTGGTGCAACATGGAATCAAAGACAACTCTGGCCCGAGTCCTGGAGTTGGTCACCAGAATGGCAATGGCATACAGTACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.61

Weight (kDa)

11.72

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 3 cut(s) 149, 230, 236
AjnI CCWGG 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 31
Ama87I CYCGRG 2 cut(s) 180, 223
AoxI GGCC 3 cut(s) 80, 140, 220
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 140, 221
AsuHPI GGTGA 2 cut(s) 139, 233
AvaI CYCGRG 2 cut(s) 180, 223
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 163
BccI CCATC 2 cut(s) 97, 101
BciT130I CCWGG 1 cut(s) 231
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 231
BmeT110I CYCGRG 2 cut(s) 180, 223
BmgT120I GGNCC 2 cut(s) 140, 221
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 230, 236
Bse1I ACTGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 108, 112
BseLI CCNNNNNNNGG 3 cut(s) 149, 230, 236
BseMI GCAATG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 3 cut(s) 82, 142, 222
BsiHKAI GWGCWC 1 cut(s) 31
BsiHKCI CYCGRG 2 cut(s) 180, 223
BslI CCNNNNNNNGG 3 cut(s) 149, 230, 236
BsnI GGCC 3 cut(s) 82, 142, 222
BsoBI CYCGRG 2 cut(s) 180, 223
Bsp1286I GDGCHC 1 cut(s) 31
BspANI GGCC 3 cut(s) 82, 142, 222
BspQI GCTCTTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 2 cut(s) 36, 125
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 2 cut(s) 108, 112
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 231
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 163
BsuRI GGCC 3 cut(s) 82, 142, 222
BtsCI GGATG 2 cut(s) 108, 112
Cfr13I GGNCC 2 cut(s) 140, 221
Csp6I GTAC 1 cut(s) 265
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 1 cut(s) 200
CviJI RGCY 5 cut(s) 60, 82, 142, 176, 222
CviKI_1 RGCY 5 cut(s) 60, 82, 142, 176, 222
CviQI GTAC 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 36, 125
EarI CTCTTC 2 cut(s) 36, 125
Eco88I CYCGRG 2 cut(s) 180, 223
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 1 cut(s) 203
FaiI YATR 3 cut(s) 125, 201, 260
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 2 cut(s) 115, 119
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 3 cut(s) 82, 142, 222
Hin1II CATG 1 cut(s) 203
HinfI GANTC 2 cut(s) 204, 226
HphI GGTGA 2 cut(s) 139, 233
HpyAV CCTTC 3 cut(s) 53, 71, 165
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 203
LguI GCTCTTC 1 cut(s) 36
LpnPI CCDG 7 cut(s) 64, 123, 176, 204, 216, 243, 257
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 92, 239
MboII GAAGA 6 cut(s) 23, 26, 29, 56, 142, 180
MhlI GDGCHC 1 cut(s) 31
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 2 cut(s) 92, 152
MslI CAYNNNNRTG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 66
NlaIII CATG 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 204
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 229
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 229
PspPI GGNCC 2 cut(s) 140, 221
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 36
SatI GCNGC 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 140, 221
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 31
SetI ASST 1 cut(s) 154
SfaNI GCATC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 72
TfiI GAWTC 1 cut(s) 204
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 2 cut(s) 20, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.