Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Forward (+)

23234969 .. 23236018

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGACAACCAAGTTTTTCAGTTTGCTGCTTCTTTTCCTGAGCTCCACATTCATTGCAGTGAGTGCTCGACCTTTCAATATCATGAAGCACAGAAACTCTGGTCGTAGAGCAATTGGAGGTTTCTTTGATGGGTTGTCTCTTGAAGCCATCAAAGAATCGGGCCCTAGCCCAGGTGAGGGGCACCAGTTTACCAACCAACAAACCCTCGGAGGGATTAAAAGCTCAGGCCCAAGTCCTGGCACAGGAAATAAATTCACAAATGTTGAGACTCTTGGTGGGATTAAGGATTCTGGTCCAAGTCCTGGTACTGGACACAAATTCACAAATGTTGAGACTCTGGGAGGGATTAAGGATTCCGGCCCTAGTCCTGGTACAGGAAACAAATTCACAAATATTGAGACTCTCGGAGGGATTAAGGATGCCGGCCCAAGTCCTGGTACAGGAAACAAATTTACAAATGTCGAAACTCTCGGAGGAATTAAAAAGTCGGGCCCAAGCCCTGGTACAGGAAACAAAGTAACAAATGTTGAGATCCTCGGTGGGATTAAGGACTCAGGTCCAAGCCCTGGTACAGGAAACAAATTCATAAATGTTGAGACACTTGGAGGGATTAAGGACTCGGGCCCAAGCCCTGGTACAGGAAACAAATTTACAGATAACACCCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

22.73

Weight (kDa)

9.58

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	180
AccB7I	CCANNNNNTGG	6 cut(s)	236, 302, 434, 500, 566, 632
AclWI	GGATC	1 cut(s)	526
AcsI	RAATTY	6 cut(s)	251, 317, 383, 449, 581, 647
AfaI	GTAC	6 cut(s)	307, 373, 439, 505, 571, 637
AgsI	TTSAA	2 cut(s)	76, 143
AjnI	CCWGG	8 cut(s)	169, 235, 301, 367, 433, 499, 565, 631
AluBI	AGCT	2 cut(s)	42, 222
AluI	AGCT	2 cut(s)	42, 222
Alw21I	GWGCWC	2 cut(s)	44, 67
Alw26I	GTCTC	5 cut(s)	141, 260, 326, 392, 590
AlwI	GGATC	1 cut(s)	526
Ama87I	CYCGRG	1 cut(s)	619
AoxI	GGCC	6 cut(s)	160, 226, 358, 424, 490, 622
ApaI	GGGCCC	3 cut(s)	164, 494, 626
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	6 cut(s)	251, 317, 383, 449, 581, 647
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	619
AvaII	GGWCC	2 cut(s)	293, 557
BaeGI	GKGCMC	4 cut(s)	164, 183, 494, 626
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	4 cut(s)	44, 164, 494, 626
Bbv12I	GWGCWC	2 cut(s)	44, 67
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	2 cut(s)	122, 155
BciT130I	CCWGG	8 cut(s)	171, 237, 303, 369, 435, 501, 567, 633
BcoDI	GTCTC	5 cut(s)	141, 260, 326, 392, 590
BfaI	CTAG	2 cut(s)	165, 363
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	8 cut(s)	171, 237, 303, 369, 435, 501, 567, 633
Bme18I	GGWCC	2 cut(s)	293, 557
BmeT110I	CYCGRG	1 cut(s)	619
BmiI	GGNNCC	4 cut(s)	162, 182, 492, 624
BmrFI	CCNGG	8 cut(s)	171, 237, 303, 369, 435, 501, 567, 633
BmsI	GCATC	1 cut(s)	409
BoxI	GACNNNNGTC	1 cut(s)	555
Bpu10I	CCTNAGC	2 cut(s)	38, 223
BsaJI	CCNNGG	6 cut(s)	169, 205, 499, 535, 565, 631
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	184, 313
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	8 cut(s)	171, 237, 303, 369, 435, 501, 567, 633
BseDI	CCNNGG	6 cut(s)	169, 205, 499, 535, 565, 631
BseGI	GGATG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	3 cut(s)	29, 237, 567
BseNI	ACTGG	2 cut(s)	184, 313
BseSI	GKGCMC	4 cut(s)	164, 183, 494, 626
BseXI	GCAGC	1 cut(s)	12
BshFI	GGCC	6 cut(s)	162, 228, 360, 426, 492, 624
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	44, 67
BsiHKCI	CYCGRG	1 cut(s)	619
BsiSI	CCGG	2 cut(s)	357, 423
BsmAI	GTCTC	5 cut(s)	141, 260, 326, 392, 590
BsnI	GGCC	6 cut(s)	162, 228, 360, 426, 492, 624
BsoBI	CYCGRG	1 cut(s)	619
Bsp120I	GGGCCC	3 cut(s)	160, 490, 622
Bsp1286I	GDGCHC	6 cut(s)	44, 67, 164, 183, 494, 626
Bsp143I	GATC	1 cut(s)	531
BspANI	GGCC	6 cut(s)	162, 228, 360, 426, 492, 624
BspCNI	CTCAG	3 cut(s)	30, 236, 566
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	4 cut(s)	162, 182, 492, 624
BspPI	GGATC	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	184, 313
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	6 cut(s)	169, 205, 499, 535, 565, 631
BssMI	GATC	1 cut(s)	531
Bst2UI	CCWGG	8 cut(s)	171, 237, 303, 369, 435, 501, 567, 633
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	3 cut(s)	38, 223, 553
BstENI	CCTNNNNNAGG	7 cut(s)	168, 240, 372, 438, 504, 570, 636
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	5 cut(s)	141, 260, 326, 392, 590
BstMBI	GATC	1 cut(s)	531
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	8 cut(s)	171, 237, 303, 369, 435, 501, 567, 633
BstPAI	GACNNNNGTC	1 cut(s)	555
BstSCI	CCNGG	8 cut(s)	169, 235, 301, 367, 433, 499, 565, 631
BstSLI	GKGCMC	4 cut(s)	164, 183, 494, 626
BstV1I	GCAGC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	6 cut(s)	162, 228, 360, 426, 492, 624
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	422
Csp6I	GTAC	6 cut(s)	306, 372, 438, 504, 570, 636
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	1 cut(s)	82
CviQI	GTAC	6 cut(s)	306, 372, 438, 504, 570, 636
DdeI	CTNAG	3 cut(s)	38, 223, 553
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	4 cut(s)	44, 164, 494, 626
Eco47I	GGWCC	2 cut(s)	293, 557
Eco53kI	GAGCTC	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	42
EcoNI	CCTNNNNNAGG	7 cut(s)	168, 240, 372, 438, 504, 570, 636
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	8 cut(s)	169, 235, 301, 367, 433, 499, 565, 631
EcoT38I	GRGCYC	4 cut(s)	44, 164, 494, 626
FaeI	CATG	1 cut(s)	85
FaiI	YATR	2 cut(s)	83, 587
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	4 cut(s)	44, 164, 494, 626
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	165, 363
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	6 cut(s)	162, 228, 360, 426, 492, 624
HapII	CCGG	2 cut(s)	357, 423
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	8 cut(s)	155, 268, 287, 334, 353, 400, 551, 617
HpaII	CCGG	2 cut(s)	357, 423
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	3 cut(s)	209, 407, 473
Hpy188III	TCNNGA	3 cut(s)	37, 82, 140
Hpy8I	GTNNAC	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	3 cut(s)	38, 223, 553
Hsp92II	CATG	1 cut(s)	85
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	2 cut(s)	165, 363
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	6 cut(s)	44, 67, 164, 183, 494, 626
MluCI	AATT	8 cut(s)	111, 251, 317, 383, 449, 477, 581, 647
MlyI	GAGTC	5 cut(s)	262, 328, 394, 545, 611
MnlI	CCTC	9 cut(s)	110, 169, 203, 215, 335, 401, 467, 545, 599
MroNI	GCCGGC	1 cut(s)	422
MseI	TTAA	7 cut(s)	216, 282, 348, 414, 480, 546, 612
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	2 cut(s)	357, 423
MspR9I	CCNGG	8 cut(s)	171, 237, 303, 369, 435, 501, 567, 633
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	8 cut(s)	171, 237, 303, 369, 435, 501, 567, 633
MwoI	GCNNNNNNNGC	1 cut(s)	62
NaeI	GCCGGC	1 cut(s)	424
NdeII	GATC	1 cut(s)	531
NgoMIV	GCCGGC	1 cut(s)	422
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	4 cut(s)	162, 182, 492, 624
PagI	TCATGA	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	155, 287, 353
PflMI	CCANNNNNTGG	6 cut(s)	236, 302, 434, 500, 566, 632
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	5 cut(s)	262, 328, 394, 545, 611
PpsI	GAGTC	5 cut(s)	262, 328, 394, 545, 611
PshAI	GACNNNNGTC	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	44
Psp6I	CCWGG	8 cut(s)	169, 235, 301, 367, 433, 499, 565, 631
PspGI	CCWGG	8 cut(s)	169, 235, 301, 367, 433, 499, 565, 631
PspN4I	GGNNCC	4 cut(s)	162, 182, 492, 624
PspOMI	GGGCCC	3 cut(s)	160, 490, 622
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	6 cut(s)	307, 373, 439, 505, 571, 637
RsaNI	GTAC	6 cut(s)	306, 372, 438, 504, 570, 636
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	7 cut(s)	216, 282, 348, 414, 480, 546, 612
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	1 cut(s)	531
SchI	GAGTC	5 cut(s)	262, 328, 394, 545, 611
ScrFI	CCNGG	8 cut(s)	171, 237, 303, 369, 435, 501, 567, 633
SduI	GDGCHC	6 cut(s)	44, 67, 164, 183, 494, 626
SetI	ASST	6 cut(s)	44, 73, 121, 175, 224, 559
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	2 cut(s)	293, 557
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	8 cut(s)	111, 251, 317, 383, 449, 477, 581, 647
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	2 cut(s)	165, 363
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	8 cut(s)	169, 235, 301, 367, 433, 499, 565, 631
TaqI	TCGA	2 cut(s)	67, 462
TasI	AATT	8 cut(s)	111, 251, 317, 383, 449, 477, 581, 647
TfiI	GAWTC	3 cut(s)	155, 287, 353
Tru1I	TTAA	7 cut(s)	216, 282, 348, 414, 480, 546, 612
Tru9I	TTAA	7 cut(s)	216, 282, 348, 414, 480, 546, 612
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	40, 98, 574
TspRI	CASTG	1 cut(s)	63
Van91I	CCANNNNNTGG	6 cut(s)	236, 302, 434, 500, 566, 632
VpaK11BI	GGWCC	2 cut(s)	293, 557
XagI	CCTNNNNNAGG	7 cut(s)	168, 240, 372, 438, 504, 570, 636
XapI	RAATTY	6 cut(s)	251, 317, 383, 449, 581, 647
XspI	CTAG	2 cut(s)	165, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.