RchiOBHm_Chr1g0340091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002124
Physical Location & Seq
Forward (+)
31566764 .. 31567338
575 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56690

Sequence Viewer

Length: 540 bp
ATGACAACCAAATGCCTCGGTTTCCTTTTGGTCATTGTTTTGCTCAACTCCACAATTCTTGGGGAAAGTGCTCGACGTTTCGATATTATAAAGCACCGCAACTTGTGTCGTGGAGCAATCGGGGGTTTCTTTGACGGCTTATGTCTCGGATCGATCAAGGAGTCGGGTCCTAGCCCGGGTCAAGGGAACAAGTTCAATGACAACCAAACCCTTGGAGGAAGAAAGGTTTCCGGCCCTAGCCCTGGTACTAGAAACAAAGTCACAAATGTTGAGACACTTGAAGGGGTTAAGGATTCCGGCCCAAGCCCTGGTACGGGACACAAATTTACAAAGGTTGAGACCCTCGGAGGGATTAAGGACGCTGGCCTCAGCCCTGATACAAGAAACTCATTCACGAATATAGACATTCTTAGAGGGATTAAGGATGGCCCAAGCCCTGGTACAGGAAACTCATTTACAAATGTAGATGTTTTAGGAGGAATTAAGGATGGGCCAAGCCCAGGTACAGGAAACAAATTAATGAACAACATACATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

18.66

Weight (kDa)

9.44

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AccB7I CCANNNNNTGG 2 cut(s) 308, 437
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 4 cut(s) 247, 313, 442, 505
AgsI TTSAA 2 cut(s) 196, 281
AjnI CCWGG 4 cut(s) 241, 307, 436, 499
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 3 cut(s) 149, 266, 332
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 5 cut(s) 232, 298, 364, 427, 491
ApoI RAATTY 1 cut(s) 323
AseI ATTAAT 1 cut(s) 518
Asp700I GAANNNNTTC 2 cut(s) 191, 226
AspS9I GGNCC 5 cut(s) 167, 233, 299, 428, 491
AsuC2I CCSGG 2 cut(s) 176, 177
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 419, 482
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 4 cut(s) 243, 309, 438, 501
BcnI CCSGG 2 cut(s) 176, 177
BcoDI GTCTC 3 cut(s) 149, 266, 332
BfaI CTAG 3 cut(s) 171, 237, 249
Bme1390I CCNGG 6 cut(s) 176, 177, 243, 309, 438, 501
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 5 cut(s) 167, 233, 299, 428, 491
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 6 cut(s) 176, 177, 243, 309, 438, 501
Bpu10I CCTNAGC 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 176, 177
Bsa29I ATCGAT 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 8 cut(s) 16, 175, 211, 241, 307, 343, 436, 499
BseBI CCWGG 4 cut(s) 243, 309, 438, 501
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 8 cut(s) 16, 175, 211, 241, 307, 343, 436, 499
BseGI GGATG 2 cut(s) 430, 493
BseMII CTCAG 1 cut(s) 382
BshFI GGCC 5 cut(s) 234, 300, 366, 429, 493
BshVI ATCGAT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 3 cut(s) 176, 231, 297
BslFI GGGAC 1 cut(s) 330
BsmAI GTCTC 3 cut(s) 149, 266, 332
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 5 cut(s) 234, 300, 366, 429, 493
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 149, 153
BspACI CCGC 1 cut(s) 97
BspANI GGCC 5 cut(s) 234, 300, 366, 429, 493
BspCNI CTCAG 1 cut(s) 381
BspDI ATCGAT 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 332
BssECI CCNNGG 8 cut(s) 16, 175, 211, 241, 307, 343, 436, 499
BssMI GATC 2 cut(s) 149, 153
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 4 cut(s) 243, 309, 438, 501
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 2 cut(s) 368, 410
BstENI CCTNNNNNAGG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 430, 493
BstKTI GATC 2 cut(s) 152, 156
BstMAI GTCTC 3 cut(s) 149, 266, 332
BstMBI GATC 2 cut(s) 149, 153
BstNI CCWGG 4 cut(s) 243, 309, 438, 501
BstSCI CCNGG 6 cut(s) 174, 175, 241, 307, 436, 499
BstXI CCANNNNNNTGG 1 cut(s) 212
Bsu15I ATCGAT 1 cut(s) 152
BsuRI GGCC 5 cut(s) 234, 300, 366, 429, 493
BsuTUI ATCGAT 1 cut(s) 152
BtsCI GGATG 2 cut(s) 430, 493
Cac8I GCNNGC 1 cut(s) 364
Cfr13I GGNCC 5 cut(s) 167, 233, 299, 428, 491
Cfr9I CCCGGG 1 cut(s) 175
ClaI ATCGAT 1 cut(s) 152
CseI GACGC 1 cut(s) 368
Csp6I GTAC 4 cut(s) 246, 312, 441, 504
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviQI GTAC 4 cut(s) 246, 312, 441, 504
DdeI CTNAG 2 cut(s) 368, 410
DpnI GATC 2 cut(s) 151, 155
DpnII GATC 2 cut(s) 149, 153
Eco130I CCWWGG 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 4 cut(s) 241, 307, 436, 499
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaiI YATR 4 cut(s) 89, 142, 401, 530
FaqI GGGAC 1 cut(s) 330
FokI GGATG 2 cut(s) 437, 500
FspBI CTAG 3 cut(s) 171, 237, 249
HaeIII GGCC 5 cut(s) 234, 300, 366, 429, 493
HapII CCGG 3 cut(s) 176, 231, 297
HgaI GACGC 1 cut(s) 368
HinfI GANTC 2 cut(s) 161, 293
HpaII CCGG 3 cut(s) 176, 231, 297
Hpy188I TCNGA 2 cut(s) 149, 347
Hpy188III TCNNGA 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 368, 410
HpySE526I ACGT 1 cut(s) 76
Kzo9I GATC 2 cut(s) 149, 153
LmnI GCTCC 1 cut(s) 113
MaeI CTAG 3 cut(s) 171, 237, 249
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 151, 155
MboI GATC 2 cut(s) 149, 153
MboII GAAGA 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 4 cut(s) 54, 323, 480, 515
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 7 cut(s) 26, 209, 341, 353, 377, 407, 470
MroXI GAANNNNTTC 2 cut(s) 191, 226
MseI TTAA 5 cut(s) 288, 354, 420, 483, 518
MspI CCGG 3 cut(s) 176, 231, 297
MspR9I CCNGG 6 cut(s) 176, 177, 243, 309, 438, 501
MvaI CCWGG 4 cut(s) 243, 309, 438, 501
NciI CCSGG 2 cut(s) 176, 177
NdeII GATC 2 cut(s) 149, 153
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 259
PdmI GAANNNNTTC 2 cut(s) 191, 226
PfeI GAWTC 1 cut(s) 293
PflMI CCANNNNNTGG 2 cut(s) 308, 437
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 518
PsiI TTATAA 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 4 cut(s) 241, 307, 436, 499
PspGI CCWGG 4 cut(s) 241, 307, 436, 499
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 5 cut(s) 167, 233, 299, 428, 491
PspPPI RGGWCCY 1 cut(s) 167
RsaI GTAC 4 cut(s) 247, 313, 442, 505
RsaNI GTAC 4 cut(s) 246, 312, 441, 504
SaqAI TTAA 5 cut(s) 288, 354, 420, 483, 518
Sau3AI GATC 2 cut(s) 149, 153
Sau96I GGNCC 5 cut(s) 167, 233, 299, 428, 491
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 6 cut(s) 176, 177, 243, 309, 438, 501
SduI GDGCHC 1 cut(s) 73
SetI ASST 4 cut(s) 79, 228, 336, 505
SinI GGWCC 1 cut(s) 167
SmaI CCCGGG 1 cut(s) 177
Sse9I AATT 4 cut(s) 54, 323, 480, 515
SsiI CCGC 1 cut(s) 97
SspMI CTAG 3 cut(s) 171, 237, 249
StyD4I CCNGG 6 cut(s) 174, 175, 241, 307, 436, 499
StyI CCWWGG 1 cut(s) 211
TaiI ACGT 1 cut(s) 79
TaqI TCGA 3 cut(s) 73, 81, 152
TasI AATT 4 cut(s) 54, 323, 480, 515
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 5 cut(s) 288, 354, 420, 483, 518
Tru9I TTAA 5 cut(s) 288, 354, 420, 483, 518
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 536
TspMI CCCGGG 1 cut(s) 175
Van91I CCANNNNNTGG 2 cut(s) 308, 437
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 1 cut(s) 518
XagI CCTNNNNNAGG 1 cut(s) 441
XapI RAATTY 1 cut(s) 323
XmaI CCCGGG 1 cut(s) 175
XmnI GAANNNNTTC 2 cut(s) 191, 226
XspI CTAG 3 cut(s) 171, 237, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.