Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Forward (+)

35563643 .. 35564182

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGACGACCAAATGCCTCGGTTTCCTTTTGGTCATTGTTTTGCTCAACTCCACAATTCTTGGGGAAAGTGCTCGACGTTTCGATATTATAAAGCACCACAACTTGTGTCGTGGAGCAATCGGGGGTTTCTTTGATGGCTTATGTCTCGGATCGATCAAGGAGTCGGGTCCTAGCCCGGGTCAAGGGAACAAGTTCAATGACAACCAAACCCTTGGAGGAAGAAAGGATTCCGGCCCAAGCCCTGGTACGGGACACAAATTTACAAAGGTTGAGACCCTCGGAGGGATTAAGGATGCTGGGCTCAGCCCTGATACAAGAAACTCATTCACGAATATAGATATTCTTAGAGGGATTAAGGATGGCCCAAGCCCTGGTACAGGAAACTCATTTACAAATGTAGATATTTTAGGAGGAATTAAGGATGGGCCAAGCCCAGGCACAGGAAACAAATTAACGAACAACATACATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

16.38

Weight (kDa)

9.12

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccB7I	CCANNNNNTGG	2 cut(s)	242, 371
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	2 cut(s)	247, 376
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	3 cut(s)	241, 370, 433
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	149, 266
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	3 cut(s)	232, 361, 425
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	2 cut(s)	191, 226
AspS9I	GGNCC	4 cut(s)	167, 233, 362, 425
AsuC2I	CCSGG	2 cut(s)	176, 177
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	73
BccI	CCATC	3 cut(s)	128, 353, 416
BciT130I	CCWGG	3 cut(s)	243, 372, 435
BcnI	CCSGG	2 cut(s)	176, 177
BcoDI	GTCTC	2 cut(s)	149, 266
BfaI	CTAG	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	302
Bme1390I	CCNGG	5 cut(s)	176, 177, 243, 372, 435
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	4 cut(s)	167, 233, 362, 425
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	5 cut(s)	176, 177, 243, 372, 435
BmsI	GCATC	1 cut(s)	283
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuMI	CCSGG	2 cut(s)	176, 177
Bsa29I	ATCGAT	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	7 cut(s)	16, 175, 211, 241, 277, 370, 433
BseBI	CCWGG	3 cut(s)	243, 372, 435
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	7 cut(s)	16, 175, 211, 241, 277, 370, 433
BseGI	GGATG	3 cut(s)	298, 364, 427
BseMII	CTCAG	1 cut(s)	316
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	3 cut(s)	234, 363, 427
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	176, 231
BslFI	GGGAC	1 cut(s)	264
BsmAI	GTCTC	2 cut(s)	149, 266
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	3 cut(s)	234, 363, 427
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	73, 303
Bsp143I	GATC	2 cut(s)	149, 153
Bsp1720I	GCTNAGC	1 cut(s)	302
BspANI	GGCC	3 cut(s)	234, 363, 427
BspCNI	CTCAG	1 cut(s)	315
BspDI	ATCGAT	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	266
BssECI	CCNNGG	7 cut(s)	16, 175, 211, 241, 277, 370, 433
BssMI	GATC	2 cut(s)	149, 153
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	3 cut(s)	243, 372, 435
BstDEI	CTNAG	2 cut(s)	302, 344
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	298, 364, 427
BstKTI	GATC	2 cut(s)	152, 156
BstMAI	GTCTC	2 cut(s)	149, 266
BstMBI	GATC	2 cut(s)	149, 153
BstNI	CCWGG	3 cut(s)	243, 372, 435
BstSCI	CCNGG	5 cut(s)	174, 175, 241, 370, 433
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	234, 363, 427
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	298, 364, 427
Cfr13I	GGNCC	4 cut(s)	167, 233, 362, 425
Cfr9I	CCCGGG	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	246, 375
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviQI	GTAC	2 cut(s)	246, 375
DdeI	CTNAG	2 cut(s)	302, 344
DpnI	GATC	2 cut(s)	151, 155
DpnII	GATC	2 cut(s)	149, 153
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	3 cut(s)	241, 370, 433
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	211
FaiI	YATR	4 cut(s)	89, 142, 335, 464
FaqI	GGGAC	1 cut(s)	264
FokI	GGATG	3 cut(s)	305, 371, 434
FriOI	GRGCYC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	234, 363, 427
HapII	CCGG	2 cut(s)	176, 231
HinfI	GANTC	2 cut(s)	161, 227
HpaII	CCGG	2 cut(s)	176, 231
Hpy188I	TCNGA	2 cut(s)	149, 281
Hpy188III	TCNNGA	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	78
HpyCH4IV	ACGT	1 cut(s)	76
HpyF3I	CTNAG	2 cut(s)	302, 344
HpySE526I	ACGT	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	149, 153
LmnI	GCTCC	1 cut(s)	113
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	76
MalI	GATC	2 cut(s)	151, 155
MboI	GATC	2 cut(s)	149, 153
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	73, 303
MluCI	AATT	4 cut(s)	54, 257, 414, 449
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	6 cut(s)	26, 209, 275, 287, 341, 404
MroXI	GAANNNNTTC	2 cut(s)	191, 226
MseI	TTAA	4 cut(s)	288, 354, 417, 452
MspI	CCGG	2 cut(s)	176, 231
MspR9I	CCNGG	5 cut(s)	176, 177, 243, 372, 435
MvaI	CCWGG	3 cut(s)	243, 372, 435
NciI	CCSGG	2 cut(s)	176, 177
NdeII	GATC	2 cut(s)	149, 153
NlaIV	GGNNCC	1 cut(s)	168
PdmI	GAANNNNTTC	2 cut(s)	191, 226
PfeI	GAWTC	1 cut(s)	227
PflMI	CCANNNNNTGG	2 cut(s)	242, 371
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	3 cut(s)	241, 370, 433
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	3 cut(s)	241, 370, 433
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	167, 233, 362, 425
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	247, 376
RsaNI	GTAC	2 cut(s)	246, 375
SaqAI	TTAA	4 cut(s)	288, 354, 417, 452
Sau3AI	GATC	2 cut(s)	149, 153
Sau96I	GGNCC	4 cut(s)	167, 233, 362, 425
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	5 cut(s)	176, 177, 243, 372, 435
SduI	GDGCHC	2 cut(s)	73, 303
SetI	ASST	2 cut(s)	79, 270
SfaNI	GCATC	1 cut(s)	283
SinI	GGWCC	1 cut(s)	167
SmaI	CCCGGG	1 cut(s)	177
Sse9I	AATT	4 cut(s)	54, 257, 414, 449
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	5 cut(s)	174, 175, 241, 370, 433
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	3 cut(s)	73, 81, 152
TasI	AATT	4 cut(s)	54, 257, 414, 449
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	4 cut(s)	288, 354, 417, 452
Tru9I	TTAA	4 cut(s)	288, 354, 417, 452
TspMI	CCCGGG	1 cut(s)	175
Van91I	CCANNNNNTGG	2 cut(s)	242, 371
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	257
XmaI	CCCGGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	191, 226
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.