Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

26731407 .. 26731886

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1289400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACTACCAAGTTCTTCAGTTTCGTTTTGCTGCTTGTTTTGCTCAACTCTACATTCATTGCAGTAAGTGCCCGGCCCTTGAATATCATGAAGTACAAAAACTCTTGTTTTGAAGCAGTTGAAGCTTTCTTTGATGGGTTAGCACTTGGAGCCATCAAGGAATCGGGCCCTAGCCCGGGCGAGGGGCACAAGTTTACGAACCAACAAACTCTCGGAGGGATTAAAAACTCAGGTCCAAGTCTTGGTACAGGAGACGTGTTTACAAATGTTGAGACTCTAGGTGGGATTAAGAATTCTGGCTCAAGTCCTGGTACTGGAAACAAATTCACGAATGTTGCGACTCTCAAAGGAATTAAGGACTCCGGTCCAAGTCCTGGTACGGGAAACAAATTCACGAATGTTGAGACTCTTGGAGGGATTAAGGACTCGGGTCCAAGTCCTGGTCAAGGAAATAAATTTACAGACAACATTCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

16.49

Weight (kDa)

9.07

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	242, 374, 440
AcsI	RAATTY	4 cut(s)	292, 323, 389, 455
AfaI	GTAC	4 cut(s)	95, 247, 313, 379
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	82, 113, 122
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	3 cut(s)	307, 373, 439
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	3 cut(s)	246, 266, 398
Ama87I	CYCGRG	2 cut(s)	175, 427
AoxI	GGCC	2 cut(s)	74, 166
ApaI	GGGCCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	4 cut(s)	292, 323, 389, 455
AspS9I	GGNCC	6 cut(s)	75, 166, 167, 233, 365, 431
AsuC2I	CCSGG	3 cut(s)	73, 176, 177
AvaI	CYCGRG	2 cut(s)	175, 427
AvaII	GGWCC	3 cut(s)	233, 365, 431
BaeGI	GKGCMC	3 cut(s)	73, 170, 189
BanII	GRGCYC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	128, 161
BciT130I	CCWGG	3 cut(s)	309, 375, 441
BcnI	CCSGG	3 cut(s)	73, 176, 177
BcoDI	GTCTC	3 cut(s)	246, 266, 398
BfaI	CTAG	2 cut(s)	171, 278
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	6 cut(s)	73, 176, 177, 309, 375, 441
Bme18I	GGWCC	3 cut(s)	233, 365, 431
BmeT110I	CYCGRG	2 cut(s)	175, 427
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	6 cut(s)	75, 166, 167, 233, 365, 431
BmiI	GGNNCC	3 cut(s)	151, 168, 432
BmrFI	CCNGG	6 cut(s)	73, 176, 177, 309, 375, 441
BoxI	GACNNNNGTC	2 cut(s)	363, 429
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	3 cut(s)	73, 176, 177
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	3 cut(s)	309, 375, 441
BseDI	CCNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	319
BseSI	GKGCMC	3 cut(s)	73, 170, 189
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	2 cut(s)	76, 168
BsiHKCI	CYCGRG	2 cut(s)	175, 427
BsiSI	CCGG	3 cut(s)	73, 176, 363
BsmAI	GTCTC	3 cut(s)	246, 266, 398
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	76, 168
BsoBI	CYCGRG	2 cut(s)	175, 427
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	3 cut(s)	73, 170, 189
BspANI	GGCC	2 cut(s)	76, 168
BspCNI	CTCAG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	151, 168, 432
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	175
Bst2UI	CCWGG	3 cut(s)	309, 375, 441
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstMAI	GTCTC	3 cut(s)	246, 266, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 68, 122, 149
BstNI	CCWGG	3 cut(s)	309, 375, 441
BstPAI	GACNNNNGTC	2 cut(s)	363, 429
BstSCI	CCNGG	6 cut(s)	71, 174, 175, 307, 373, 439
BstSLI	GKGCMC	3 cut(s)	73, 170, 189
BstV1I	GCAGC	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	76, 168
BtrI	CACGTC	1 cut(s)	256
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	6 cut(s)	75, 166, 167, 233, 365, 431
Cfr9I	CCCGGG	1 cut(s)	175
Csp6I	GTAC	4 cut(s)	94, 246, 312, 378
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	6 cut(s)	76, 125, 152, 168, 174, 300
CviKI_1	RGCY	6 cut(s)	76, 125, 152, 168, 174, 300
CviQI	GTAC	4 cut(s)	94, 246, 312, 378
DdeI	CTNAG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	3 cut(s)	233, 365, 431
Eco88I	CYCGRG	2 cut(s)	175, 427
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	3 cut(s)	307, 373, 439
EcoT38I	GRGCYC	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	2 cut(s)	171, 278
GluI	GCNGC	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	76, 168
HapII	CCGG	3 cut(s)	73, 176, 363
Hin1II	CATG	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	6 cut(s)	161, 274, 340, 359, 406, 425
HpaII	CCGG	3 cut(s)	73, 176, 363
Hpy166II	GTNNAC	2 cut(s)	195, 261
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	3 cut(s)	88, 328, 394
Hpy8I	GTNNAC	2 cut(s)	195, 261
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 68, 122, 149
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	18
MaeI	CTAG	2 cut(s)	171, 278
MaeII	ACGT	1 cut(s)	255
MboII	GAAGA	1 cut(s)	7
MhlI	GDGCHC	3 cut(s)	73, 170, 189
MluCI	AATT	5 cut(s)	292, 323, 351, 389, 455
MlyI	GAGTC	5 cut(s)	268, 334, 353, 400, 419
MnlI	CCTC	3 cut(s)	175, 209, 407
MseI	TTAA	4 cut(s)	222, 288, 354, 420
MspI	CCGG	3 cut(s)	73, 176, 363
MspR9I	CCNGG	6 cut(s)	73, 176, 177, 309, 375, 441
MvaI	CCWGG	3 cut(s)	309, 375, 441
MwoI	GCNNNNNNNGC	4 cut(s)	40, 68, 122, 149
NciI	CCSGG	3 cut(s)	73, 176, 177
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	3 cut(s)	151, 168, 432
PagI	TCATGA	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	161
PflMI	CCANNNNNTGG	3 cut(s)	242, 374, 440
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	5 cut(s)	268, 334, 353, 400, 419
PpsI	GAGTC	5 cut(s)	268, 334, 353, 400, 419
PshAI	GACNNNNGTC	2 cut(s)	363, 429
Psp6I	CCWGG	3 cut(s)	307, 373, 439
PspGI	CCWGG	3 cut(s)	307, 373, 439
PspN4I	GGNNCC	3 cut(s)	151, 168, 432
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	6 cut(s)	75, 166, 167, 233, 365, 431
RsaI	GTAC	4 cut(s)	95, 247, 313, 379
RsaNI	GTAC	4 cut(s)	94, 246, 312, 378
SaqAI	TTAA	4 cut(s)	222, 288, 354, 420
SatI	GCNGC	1 cut(s)	32
Sau96I	GGNCC	6 cut(s)	75, 166, 167, 233, 365, 431
SchI	GAGTC	5 cut(s)	268, 334, 353, 400, 419
ScrFI	CCNGG	6 cut(s)	73, 176, 177, 309, 375, 441
SduI	GDGCHC	3 cut(s)	73, 170, 189
SetI	ASST	4 cut(s)	127, 235, 258, 283
SinI	GGWCC	3 cut(s)	233, 365, 431
SmaI	CCCGGG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
SrfI	GCCCGGGC	1 cut(s)	177
Sse9I	AATT	5 cut(s)	292, 323, 351, 389, 455
SspMI	CTAG	2 cut(s)	171, 278
StyD4I	CCNGG	6 cut(s)	71, 174, 175, 307, 373, 439
TaiI	ACGT	1 cut(s)	258
TasI	AATT	5 cut(s)	292, 323, 351, 389, 455
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	4 cut(s)	222, 288, 354, 420
Tru9I	TTAA	4 cut(s)	222, 288, 354, 420
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	46, 104, 461
TspMI	CCCGGG	1 cut(s)	175
Van91I	CCANNNNNTGG	3 cut(s)	242, 374, 440
VpaK11BI	GGWCC	3 cut(s)	233, 365, 431
XagI	CCTNNNNNAGG	1 cut(s)	444
XapI	RAATTY	4 cut(s)	292, 323, 389, 455
XmaI	CCCGGG	1 cut(s)	175
XspI	CTAG	2 cut(s)	171, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.