Prupe.3G151900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002124
Physical Location & Seq
Reverse (-)
16586803 .. 16587302
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G151900.1

Sequence Viewer

Length: 333 bp
ATGTGGAAACCCGACAGCCTCTATGTTCTCATTGCCTCACCTTTCAATATCATGAGTACAACAATTGGAGGTTTCCTTGATGGGTTATCTCTTGGAGCCATCAAAGAATCGGGCCCTAGCCCAGGTGAGGGGCACAAATTTATGAACCAACAAACCCTTGGAGGGATAAAGAAACCTAGCCCGAGCCCTCCCTTCCCTCCCCACAACTCCTCCATCTCTCTTCCTTTTTCCATCCCATCCACCCCCACAAAATATGAGTGGAGGACACAGTCTATTGGTTTTCCAAAATTTCTTATTAATTTTTTTATTTTGTTATTTGTATTAATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.07

Weight (kDa)

9.46

Isoelectric Point (pI)

65.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 331
AcsI RAATTY 2 cut(s) 137, 287
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 4 cut(s) 122, 127, 128, 162
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 1 cut(s) 112
ApaI GGGCCC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 137, 287
AseI ATTAAT 2 cut(s) 297, 323
AspS9I GGNCC 2 cut(s) 112, 113
AsuHPI GGTGA 2 cut(s) 30, 137
AvaI CYCGRG 1 cut(s) 181
BaeGI GKGCMC 2 cut(s) 116, 135
BanII GRGCYC 2 cut(s) 116, 188
BccI CCATC 5 cut(s) 74, 107, 221, 239, 244
BciT130I CCWGG 1 cut(s) 123
BfaI CTAG 2 cut(s) 117, 177
Bme1390I CCNGG 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 112, 113
BmiI GGNNCC 2 cut(s) 97, 114
BmrFI CCNGG 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 121, 157
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 127, 128, 162
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 121, 157
BseGI GGATG 2 cut(s) 231, 236
BseLI CCNNNNNNNGG 4 cut(s) 122, 127, 128, 162
BseMI GCAATG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 199
BseSI GKGCMC 2 cut(s) 116, 135
BshFI GGCC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 181
BslI CCNNNNNNNGG 4 cut(s) 122, 127, 128, 162
BsnI GGCC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 181
Bsp120I GGGCCC 1 cut(s) 112
Bsp1286I GDGCHC 3 cut(s) 116, 135, 188
BspANI GGCC 1 cut(s) 114
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 97, 114
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 121, 157
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 231, 236
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSLI GKGCMC 2 cut(s) 116, 135
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 231, 236
CciI TCATGA 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 112, 113
Csp6I GTAC 1 cut(s) 57
CviAII CATG 1 cut(s) 52
CviJI RGCY 6 cut(s) 18, 98, 114, 120, 180, 186
CviKI_1 RGCY 6 cut(s) 18, 98, 114, 120, 180, 186
CviQI GTAC 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 2 cut(s) 116, 188
Eco88I CYCGRG 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 2 cut(s) 116, 188
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 55
FaiI YATR 5 cut(s) 24, 53, 143, 255, 331
FatI CATG 1 cut(s) 51
FokI GGATG 2 cut(s) 218, 223
FriOI GRGCYC 2 cut(s) 116, 188
FspBI CTAG 2 cut(s) 117, 177
HaeIII GGCC 1 cut(s) 114
Hin1II CATG 1 cut(s) 55
HinfI GANTC 1 cut(s) 107
HphI GGTGA 2 cut(s) 30, 137
Hpy188III TCNNGA 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 270
Hsp92II CATG 1 cut(s) 55
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 2 cut(s) 108, 135
MaeI CTAG 2 cut(s) 117, 177
MboII GAAGA 1 cut(s) 212
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 3 cut(s) 116, 135, 188
MluCI AATT 4 cut(s) 63, 137, 287, 298
MnlI CCTC 9 cut(s) 29, 46, 62, 121, 155, 198, 207, 220, 255
MseI TTAA 2 cut(s) 297, 323
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 123
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 2 cut(s) 97, 114
PagI TCATGA 1 cut(s) 51
PfeI GAWTC 1 cut(s) 107
PflFI GACNNNGTC 1 cut(s) 268
PshBI ATTAAT 2 cut(s) 297, 323
PsiI TTATAA 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 97, 114
PspOMI GGGCCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 112, 113
PsyI GACNNNGTC 1 cut(s) 268
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 297, 323
Sau96I GGNCC 2 cut(s) 112, 113
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 3 cut(s) 116, 135, 188
SetI ASST 4 cut(s) 43, 73, 127, 178
Sse9I AATT 4 cut(s) 63, 137, 287, 298
SspI AATATT 1 cut(s) 327
SspMI CTAG 2 cut(s) 117, 177
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 270
TasI AATT 4 cut(s) 63, 137, 287, 298
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 297, 323
Tru9I TTAA 2 cut(s) 297, 323
TspDTI ATGAA 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 268
VspI ATTAAT 2 cut(s) 297, 323
XagI CCTNNNNNAGG 1 cut(s) 120
XapI RAATTY 2 cut(s) 137, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XspI CTAG 2 cut(s) 117, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.