Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

4161467 .. 4162564

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCCAGAGCAGTGCTCAAGTCACTTGCCATTTTTGCCATTCTTCTTGCTGCTTTCCTCCTGAGCGCTCAGTTTTCTTCACTAGAAGCTCGACCGCTGACTACTTCAAGATCATCATCACGCAATGGTGTCGTTGCTAGAGAGAGTACTGAAGACAACGCGATGAAGAGTAGCAGTACTTCAGGAGGAAGTCGGCTGAGTGCTGGAGGACACAGATTGGTGAACTTTCAGAGATTAGCAACAGTAAGGAACTCAGGCCCTGGCCCTGGTGAAGGGCATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

9.81

Weight (kDa)

11.71

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	161
AciI	CCGC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	165, 171
AfaI	GTAC	2 cut(s)	148, 178
AfeI	AGCGCT	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	266, 272
AgsI	TTSAA	1 cut(s)	108
AjnI	CCWGG	2 cut(s)	259, 265
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw21I	GWGCWC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	260
Aor51HI	AGCGCT	1 cut(s)	67
AoxI	GGCC	3 cut(s)	3, 256, 262
ApeKI	GCWGC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	257, 263
AsuHPI	GGTGA	2 cut(s)	232, 281
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	163, 195
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	2 cut(s)	261, 267
BfaI	CTAG	2 cut(s)	83, 138
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	2 cut(s)	148, 178
Bme1390I	CCNGG	2 cut(s)	261, 267
BmgT120I	GGNCC	2 cut(s)	257, 263
BmrFI	CCNGG	2 cut(s)	261, 267
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	259, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 272
Bse3DI	GCAATG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	261, 267
BseDI	CCNNGG	2 cut(s)	259, 265
BseJI	GATNNNNATC	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	266, 272
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	4 cut(s)	53, 83, 188, 267
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	5, 258, 264
BsiEI	CGRYCG	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	266, 272
BsnI	GGCC	3 cut(s)	5, 258, 264
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	110
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	3 cut(s)	5, 258, 264
BspCNI	CTCAG	4 cut(s)	54, 82, 189, 266
BspFNI	CGCG	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	259, 265
BssMI	GATC	1 cut(s)	110
Bst2UI	CCWGG	2 cut(s)	261, 267
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	161
BstDEI	CTNAG	4 cut(s)	62, 69, 197, 253
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	161
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	110
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	261, 267
BstSCI	CCNGG	2 cut(s)	259, 265
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	5, 258, 264
BtgZI	GCGATG	1 cut(s)	176
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	257, 263
Csp6I	GTAC	2 cut(s)	147, 177
CviJI	RGCY	5 cut(s)	5, 89, 196, 258, 264
CviKI_1	RGCY	5 cut(s)	5, 89, 196, 258, 264
CviQI	GTAC	2 cut(s)	147, 177
DdeI	CTNAG	4 cut(s)	62, 69, 197, 253
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco47III	AGCGCT	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	165, 171
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	259, 265
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	83, 138
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	5, 258, 264
HhaI	GCGC	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HphI	GGTGA	2 cut(s)	232, 281
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	3 cut(s)	61, 108, 183
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	4 cut(s)	62, 69, 197, 253
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	110
LpnPI	CCDG	9 cut(s)	19, 74, 168, 189, 240, 246, 252, 273, 279
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	2 cut(s)	83, 138
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	112
MboI	GATC	1 cut(s)	110
MboII	GAAGA	4 cut(s)	35, 69, 164, 178
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	68, 179, 200
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	97
MspR9I	CCNGG	2 cut(s)	261, 267
MvaI	CCWGG	2 cut(s)	261, 267
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	259, 265
PspGI	CCWGG	2 cut(s)	259, 265
PspPI	GGNCC	2 cut(s)	257, 263
PstNI	CAGNNNCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	148, 178
RsaNI	GTAC	2 cut(s)	147, 177
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	110
Sau96I	GGNCC	2 cut(s)	257, 263
ScaI	AGTACT	2 cut(s)	148, 178
ScrFI	CCNGG	2 cut(s)	261, 267
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	2 cut(s)	83, 138
StyD4I	CCNGG	2 cut(s)	259, 265
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	91
TatI	WGTACW	2 cut(s)	146, 176
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	270
XspI	CTAG	2 cut(s)	83, 138
ZrmI	AGTACT	2 cut(s)	148, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.