AT2G23910

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001892
Physical Location & Seq
Forward (+)
10177776 .. 10180088
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23910.1

Sequence Viewer

Length: 915 bp
ATGAATCAAGAAAAGACCATTTCTTGTTGTTGTGTTCTTGATGCTTCCACTTATGTTGGTTTCTGGATTCTCAAGAGATTGCTCACTAGAGGTTACTCTGTTCACGCAGCTATCCGTAAAAACGGGGAGAGTGTGCTTGAAGAGAAAATCAGAGACATGGAAGCTAACGAAGAGAGATTAGAGGTTTATGATGTGGATGTGTTAGATTACCAAAGTATCCTCATTTCTCTCAACAATTGTAATGCTGTCTTCTGTTGTTTGGATAATCCTGAAGGGTACGATGAGGAGAAGGAAGTGGATTTGGAGGTGAGAGGAGCTATTAATGTGGTGGAAGCATGTGCAAGAACAGAGAGTATAGAGAAGATTGTGTTCTCATCTTCGTTAACTGCTGCAATTTGGAGAGATAACATTGGAACTCAGAAAGATGTTGATGAGAAGTGTTGGAGTGATCTTGACTTCTGTCTCAAAAAAAAGTTGTGGCATGCTCTTGCGAAGACACAGTCCGAGAAGGCAGCTTGGGCATTAGCCATGGATCGTATGGTCAACATGGTTTCGGTTAACCCGGGCCTCATCGTTGGACCATCAGTGGCTCAACACAACCCAAGACCGACCATGTCTTACCTCAAAGGAGCTGCACAAATGTATGAGAACGGTGTGTTAGCGTACGTAGATGTTGAATTTGTAGCGGATGTTCACATTCGAGCATTCGAGGATACTTCGGCTTGTGGTAGATACTTTTGCTTCAACCAAATTGTGAACACGGAAGAAGAAGCTCTCAAGCTTGTACAAACTCTATCTCCTTTAATACCTATGCCACCAAGGCATGAGAAAGAAATGCAAGGAAGTGAAGTTTATGAAGAGAGATTGAGAAACAAGAAACTAAACAAGCTGGTGGAAGCTGGATTTGCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

304

Amino Acids

34.38

Weight (kDa)

4.99

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
3Beta_HSD PF01073 12 - 236 6.4e-08 3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase PF01370 15 - 218 7.9e-11 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 19 - 131 1.7e-09 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 686
AclWI GGATC 1 cut(s) 540
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 3 cut(s) 278, 665, 786
AgsI TTSAA 3 cut(s) 140, 677, 745
AluBI AGCT 9 cut(s) 110, 164, 317, 515, 632, 773, 781, 889, 899
AluI AGCT 9 cut(s) 110, 164, 317, 515, 632, 773, 781, 889, 899
Alw26I GTCTC 2 cut(s) 147, 467
AlwI GGATC 1 cut(s) 540
Ama87I CYCGRG 1 cut(s) 562
AoxI GGCC 1 cut(s) 565
ApeKI GCWGC 4 cut(s) 107, 389, 512, 632
ApoI RAATTY 1 cut(s) 677
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AseI ATTAAT 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 565, 578
AsuC2I CCSGG 2 cut(s) 563, 564
AsuHPI GGTGA 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 562
AvaII GGWCC 1 cut(s) 578
BaeI ACNNNNGTAYC 2 cut(s) 199, 232
BbsI GAAGAC 2 cut(s) 241, 500
BbvI GCAGC 4 cut(s) 119, 376, 524, 619
BccI CCATC 1 cut(s) 589
BciVI GTATCC 2 cut(s) 227, 706
BcnI CCSGG 2 cut(s) 563, 564
BcoDI GTCTC 2 cut(s) 147, 467
BfaI CTAG 1 cut(s) 87
BfuI GTATCC 2 cut(s) 227, 706
BglI GCCNNNNNGGC 1 cut(s) 820
BisI GCNGC 4 cut(s) 108, 390, 513, 633
BlsI GCNGC 4 cut(s) 109, 391, 514, 634
Bme1390I CCNGG 2 cut(s) 563, 564
Bme18I GGWCC 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 562
BmgT120I GGNCC 2 cut(s) 565, 578
BmrFI CCNGG 2 cut(s) 563, 564
BmsI GCATC 1 cut(s) 31
BoxI GACNNNNGTC 1 cut(s) 459
BpiI GAAGAC 2 cut(s) 241, 500
BpuEI CTTGAG 2 cut(s) 56, 761
BpuMI CCSGG 2 cut(s) 563, 564
BsaAI YACGTR 1 cut(s) 667
BsaJI CCNNGG 3 cut(s) 528, 562, 818
BsaXI ACNNNNNCTCC 2 cut(s) 781, 811
BseDI CCNNGG 3 cut(s) 528, 562, 818
BseGI GGATG 2 cut(s) 202, 694
BseMII CTCAG 1 cut(s) 431
BseRI GAGGAG 2 cut(s) 299, 327
BseXI GCAGC 4 cut(s) 119, 376, 524, 619
BsgI GTGCAG 1 cut(s) 618
BshFI GGCC 1 cut(s) 567
BsiHKCI CYCGRG 1 cut(s) 562
BsiSI CCGG 1 cut(s) 563
BsiWI CGTACG 1 cut(s) 663
BsmAI GTCTC 2 cut(s) 147, 467
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 1 cut(s) 567
BsoBI CYCGRG 1 cut(s) 562
Bsp1407I TGTACA 1 cut(s) 784
Bsp143I GATC 2 cut(s) 448, 532
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 1 cut(s) 686
BspANI GGCC 1 cut(s) 567
BspCNI CTCAG 1 cut(s) 430
BspPI GGATC 1 cut(s) 540
BsrGI TGTACA 1 cut(s) 784
BssECI CCNNGG 3 cut(s) 528, 562, 818
BssMI GATC 2 cut(s) 448, 532
BssT1I CCWWGG 2 cut(s) 528, 818
Bst4CI ACNGT 2 cut(s) 501, 653
Bst6I CTCTTC 3 cut(s) 135, 165, 852
BstAUI TGTACA 1 cut(s) 784
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 1 cut(s) 417
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 2 cut(s) 202, 694
BstKTI GATC 2 cut(s) 451, 535
BstMAI GTCTC 2 cut(s) 147, 467
BstMBI GATC 2 cut(s) 448, 532
BstMWI GCNNNNNNNGC 3 cut(s) 518, 820, 905
BstNSI RCATGY 2 cut(s) 339, 485
BstPAI GACNNNNGTC 1 cut(s) 459
BstSCI CCNGG 2 cut(s) 561, 562
BstSNI TACGTA 1 cut(s) 667
BstV1I GCAGC 4 cut(s) 119, 376, 524, 619
BstV2I GAAGAC 2 cut(s) 241, 500
BsuI GTATCC 2 cut(s) 227, 706
BsuRI GGCC 1 cut(s) 567
BtgI CCRYGG 1 cut(s) 528
BtsCI GGATG 2 cut(s) 202, 694
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 565, 578
Cfr9I CCCGGG 1 cut(s) 562
Csp6I GTAC 3 cut(s) 277, 664, 785
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 7 cut(s) 157, 336, 482, 529, 547, 613, 824
CviQI GTAC 3 cut(s) 277, 664, 785
DdeI CTNAG 1 cut(s) 417
DpnI GATC 2 cut(s) 450, 534
DpnII GATC 2 cut(s) 448, 532
Eam1104I CTCTTC 3 cut(s) 135, 165, 852
EarI CTCTTC 3 cut(s) 135, 165, 852
Eco105I TACGTA 1 cut(s) 667
Eco130I CCWWGG 2 cut(s) 528, 818
Eco47I GGWCC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 562
EcoT14I CCWWGG 2 cut(s) 528, 818
ErhI CCWWGG 2 cut(s) 528, 818
FaeI CATG 7 cut(s) 160, 339, 485, 532, 550, 616, 827
FatI CATG 7 cut(s) 156, 335, 481, 528, 546, 612, 823
Fnu4HI GCNGC 4 cut(s) 108, 390, 513, 633
FokI GGATG 2 cut(s) 209, 701
Fsp4HI GCNGC 4 cut(s) 108, 390, 513, 633
FspBI CTAG 1 cut(s) 87
GluI GCNGC 4 cut(s) 108, 390, 513, 633
HaeIII GGCC 1 cut(s) 567
HapII CCGG 1 cut(s) 563
Hin1II CATG 7 cut(s) 160, 339, 485, 532, 550, 616, 827
HincII GTYRAC 3 cut(s) 384, 544, 559
HindII GTYRAC 3 cut(s) 384, 544, 559
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 2 cut(s) 4, 67
HpaI GTTAAC 2 cut(s) 384, 559
HpaII CCGG 1 cut(s) 563
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 6 cut(s) 103, 384, 544, 559, 694, 757
Hpy188I TCNGA 3 cut(s) 152, 420, 505
Hpy188III TCNNGA 6 cut(s) 8, 38, 64, 73, 269, 452
Hpy8I GTNNAC 6 cut(s) 103, 384, 544, 559, 694, 757
HpyAV CCTTC 3 cut(s) 266, 283, 502
HpyCH4III ACNGT 2 cut(s) 501, 653
HpyCH4IV ACGT 1 cut(s) 666
HpyCH4V TGCA 4 cut(s) 341, 392, 635, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 518, 820, 905
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 1 cut(s) 666
Hsp92II CATG 7 cut(s) 160, 339, 485, 532, 550, 616, 827
KspAI GTTAAC 2 cut(s) 384, 559
Kzo9I GATC 2 cut(s) 448, 532
LmnI GCTCC 2 cut(s) 314, 629
LpnPI CCDG 5 cut(s) 49, 282, 576, 875, 885
Lsp1109I GCAGC 4 cut(s) 119, 376, 524, 619
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 666
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 450, 534
MboI GATC 2 cut(s) 448, 532
MboII GAAGA 9 cut(s) 152, 182, 241, 369, 373, 505, 776, 779, 869
MfeI CAATTG 1 cut(s) 235
MluCI AATT 4 cut(s) 235, 393, 677, 750
MmeI TCCRAC 2 cut(s) 422, 556
MnlI CCTC 9 cut(s) 83, 175, 230, 277, 298, 305, 578, 632, 703
MseI TTAA 5 cut(s) 321, 383, 558, 803, 913
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 2 cut(s) 563, 564
MunI CAATTG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 704
MwoI GCNNNNNNNGC 3 cut(s) 518, 820, 905
NciI CCSGG 2 cut(s) 563, 564
NcoI CCATGG 1 cut(s) 528
NdeII GATC 2 cut(s) 448, 532
NlaIII CATG 7 cut(s) 160, 339, 485, 532, 550, 616, 827
NspI RCATGY 2 cut(s) 339, 485
PaeI GCATGC 1 cut(s) 485
PctI GAATGC 1 cut(s) 704
PfeI GAWTC 2 cut(s) 4, 67
Pfl23II CGTACG 1 cut(s) 663
PflFI GACNNNGTC 2 cut(s) 499, 613
PkrI GCNGC 4 cut(s) 109, 391, 514, 634
Ppu21I YACGTR 1 cut(s) 667
PshAI GACNNNNGTC 1 cut(s) 459
PshBI ATTAAT 1 cut(s) 321
PspLI CGTACG 1 cut(s) 663
PspPI GGNCC 2 cut(s) 565, 578
PsrI GAACNNNNNNTAC 2 cut(s) 675, 707
PsyI GACNNNGTC 2 cut(s) 499, 613
RsaI GTAC 3 cut(s) 278, 665, 786
RsaNI GTAC 3 cut(s) 277, 664, 785
SaqAI TTAA 5 cut(s) 321, 383, 558, 803, 913
SatI GCNGC 4 cut(s) 108, 390, 513, 633
Sau3AI GATC 2 cut(s) 448, 532
Sau96I GGNCC 2 cut(s) 565, 578
ScrFI CCNGG 2 cut(s) 563, 564
SfaNI GCATC 1 cut(s) 31
SinI GGWCC 1 cut(s) 578
SmaI CCCGGG 1 cut(s) 564
SmlI CTYRAG 2 cut(s) 71, 776
SmoI CTYRAG 2 cut(s) 71, 776
SnaBI TACGTA 1 cut(s) 667
SphI GCATGC 1 cut(s) 485
Sse9I AATT 4 cut(s) 235, 393, 677, 750
SsiI CCGC 1 cut(s) 686
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 561, 562
StyI CCWWGG 2 cut(s) 528, 818
TaaI ACNGT 2 cut(s) 501, 653
TaiI ACGT 1 cut(s) 669
TaqI TCGA 2 cut(s) 700, 708
TaqII GACCGA 1 cut(s) 622
TasI AATT 4 cut(s) 235, 393, 677, 750
TatI WGTACW 1 cut(s) 784
TfiI GAWTC 2 cut(s) 4, 67
Tru1I TTAA 5 cut(s) 321, 383, 558, 803, 913
Tru9I TTAA 5 cut(s) 321, 383, 558, 803, 913
TscAI CASTG 1 cut(s) 591
TseI GCWGC 4 cut(s) 107, 389, 512, 632
TspDTI ATGAA 2 cut(s) 17, 870
TspGWI ACGGA 2 cut(s) 104, 776
TspMI CCCGGG 1 cut(s) 562
TspRI CASTG 1 cut(s) 591
Tth111I GACNNNGTC 2 cut(s) 499, 613
VpaK11BI GGWCC 1 cut(s) 578
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 677
XceI RCATGY 2 cut(s) 339, 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XmaI CCCGGG 1 cut(s) 562
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.