Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001892

Physical Location & Seq

Genomic Coordinates Forward (+)

3729774 .. 3733907

Gene Structure 4134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G032800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCACCAGCATCGGACTCCTTCAACCAGACCTCCAACACAGTCTGTGTAATGGATGCATCAGGCCACGTAGGCACCACCCTCACAGAGCGCCTGCTGCAGAGGGGTTACACAGTCCATGCTGCCCTTCAGAGCCATGGTGAATCGCGGTTGGGTGAGCTTTCTTGTGACAAAAAGAAGCTCAAAGTATTCAATTTAGACCCATTTGACTACCAGAGCATACTTGATGCTCTCAAAGGCTGCTCTGGCTTGTTCTATGCATTTGAGCCTCCACAAGACCAACCCAACTATGATGAATACATGGCAGAAGTAGAGGTGAGAGCAGCACACAATGTGCTAGAAGCATGTGCAAGAACAGAAACCGTAGACAAGGTTGTGTTCACATCGTCAGCCACTGCTGTGGTTTGGAGAAACGACCGTAAATCAATGGCTCTGGAGTTGGATGAACGACACTGGACTGATGTCAATTTCTGTCGCAATTTCAAGTTGTGGCATGCACTATCAAAAACCCTAGCAGAGAAAACAGCATGGGCCTTAGCAATGGACAGGAGCTTGAATATGGTGTCTGTGAATGCAGGGTTGTTGATGGGTCCTGATCTGTCCATCACTAACCCCTATATGAAAGGAGCGGCTGAGATGTATGAAGATGGCGTGTTGGTGACCGTCGATGTAGATTTCTTGGTGGATGCTCACATTTGCGTCTTCGAAGATGTCTCATCCTACGGTCGATATTTGTGCTTCAACAACATCATCAATCGGTCTGAAGATGCTGTAGAGCTGGCTAGAAAGTTGACCACTTCTGCCCCCTCATATCCCAAAAGCCAAGATCAGGATGATATGATGATCATTCAACAGCGGATTAGCAACAAGAAATTGAATAAACTAATGGTGGATTTCAAGAGTAAATCCCAAGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

307

Amino Acids

34.37

Weight (kDa)

5.23

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23910 AT2G23910 AT2G23910 AT2G23910 AT4G30470
fragaria_vesca	FvH4_5g22420 FvH4_5g22420 FvH4_5g22420
malus_domestica	MD00G1072500.v1.1 MD01G1237600.v1.1 MD06G1036600.v1.1 MD07G1310200.v1.1
prunus_persica	Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.5G032800_v2.0.a1
pyrus_communis	pycom01g24530 pycom06g03000 pycom13g28670
rosa_chinensis	RchiOBHm_Chr4g0405161 RchiOBHm_Chr7g0210161
rosa_laevigata	RLG00000003059 RLG00000008867
rosa_multiflora	Rmu_sc0005438.1_g000001 Rmu_sc0006908.1_g000015 Rmu_ssc0000255.1_g000034
rosa_roxburghii	Rroxscaffold_3G00248570 Rroxscaffold_5G00349400
rosa_rugosa	Rorug04G0054400 Rorug04G0054500 Rorug04G0054600 Rorug07G0119000
rosa_samantha	Rh1AG349400 Rh4AG129400 Rh4BG123100 Rh4CG136700 Rh4DG122900 Rh7AG252500 Rh7BG247600 Rh7CG269500 Rh7DG260100
rosa_wichuraiana	Rw0G002460 Rw1G031120 Rw4G010450 Rw7G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 74
AccBSI	CCGCTC	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	1 cut(s)	148
AciI	CCGC	3 cut(s)	148, 629, 856
AcuI	CTGAAG	2 cut(s)	113, 783
AdeI	CACNNNGTG	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	829
AgsI	TTSAA	8 cut(s)	25, 193, 484, 556, 742, 851, 877, 898
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	4 cut(s)	160, 181, 552, 778
AluI	AGCT	4 cut(s)	160, 181, 552, 778
Alw26I	GTCTC	1 cut(s)	718
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	64, 531
ApeKI	GCWGC	4 cut(s)	97, 122, 240, 323
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	531, 590
AsuHPI	GGTGA	4 cut(s)	152, 167, 328, 670
AsuII	TTCGAA	1 cut(s)	705
AvaII	GGWCC	1 cut(s)	590
BanI	GGYRCC	2 cut(s)	4, 74
BbsI	GAAGAC	1 cut(s)	694
BbvI	GCAGC	4 cut(s)	84, 109, 227, 335
BccI	CCATC	3 cut(s)	580, 611, 641
BcgI	CGANNNNNNTGC	3 cut(s)	28, 717, 751
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	1 cut(s)	718
BfaI	CTAG	3 cut(s)	338, 512, 783
BfmI	CTRYAG	2 cut(s)	98, 771
BfoI	RGCGCY	1 cut(s)	94
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	5 cut(s)	98, 123, 241, 324, 630
BlsI	GCNGC	5 cut(s)	99, 124, 242, 325, 631
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	2 cut(s)	531, 590
BmiI	GGNNCC	3 cut(s)	6, 76, 591
BmsI	GCATC	6 cut(s)	20, 46, 68, 217, 676, 757
BoxI	GACNNNNGTC	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	694
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	535
Bpu14I	TTCGAA	1 cut(s)	705
BsaAI	YACGTR	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	5 cut(s)	61, 448, 691, 716, 838
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	458
BseXI	GCAGC	4 cut(s)	84, 109, 227, 335
Bsh1236I	CGCG	1 cut(s)	148
Bsh1285I	CGRYCG	2 cut(s)	418, 727
BshFI	GGCC	2 cut(s)	66, 533
BshNI	GGYRCC	2 cut(s)	4, 74
BsiEI	CGRYCG	2 cut(s)	418, 727
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	1 cut(s)	718
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	66, 533
Bsp119I	TTCGAA	1 cut(s)	705
Bsp143I	GATC	3 cut(s)	595, 826, 843
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	3 cut(s)	148, 629, 856
BspANI	GGCC	2 cut(s)	66, 533
BspCNI	CTCAG	1 cut(s)	625
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	6, 76, 591
BspMAI	CTGCAG	1 cut(s)	102
BspT104I	TTCGAA	1 cut(s)	705
BspT107I	GGYRCC	2 cut(s)	4, 74
BsrBI	CCGCTC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	3 cut(s)	595, 826, 843
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	6 cut(s)	43, 115, 364, 419, 664, 725
BstBAI	YACGTR	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	705
BstC8I	GCNNGC	3 cut(s)	95, 495, 780
BstDEI	CTNAG	2 cut(s)	535, 633
BstDSI	CCRYGG	1 cut(s)	136
BstEII	GGTNACC	1 cut(s)	658
BstF5I	GGATG	5 cut(s)	61, 448, 691, 716, 838
BstFNI	CGCG	1 cut(s)	148
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	598, 829, 846
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	3 cut(s)	595, 826, 843
BstMCI	CGRYCG	2 cut(s)	418, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 97, 246
BstNSI	RCATGY	2 cut(s)	348, 497
BstPAI	GACNNNNGTC	1 cut(s)	461
BstPI	GGTNACC	1 cut(s)	658
BstSFI	CTRYAG	2 cut(s)	98, 771
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	4 cut(s)	84, 109, 227, 335
BstV2I	GAAGAC	1 cut(s)	694
BstXI	CCANNNNNNTGG	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	66, 533
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	5 cut(s)	61, 448, 691, 716, 838
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	393, 451
Cac8I	GCNNGC	3 cut(s)	95, 495, 780
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	531, 590
CseI	GACGC	1 cut(s)	688
CviAII	CATG	6 cut(s)	119, 137, 301, 345, 494, 528
DdeI	CTNAG	2 cut(s)	535, 633
DpnI	GATC	3 cut(s)	597, 828, 845
DpnII	GATC	3 cut(s)	595, 826, 843
DraIII	CACNNNGTG	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	590
Eco57I	CTGAAG	2 cut(s)	113, 783
Eco91I	GGTNACC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	590
EcoO65I	GGTNACC	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	2 cut(s)	61, 262
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	6 cut(s)	122, 140, 304, 348, 497, 531
FatI	CATG	6 cut(s)	118, 136, 300, 344, 493, 527
FbaI	TGATCA	1 cut(s)	843
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	98, 123, 241, 324, 630
FokI	GGATG	5 cut(s)	68, 455, 698, 703, 845
Fsp4HI	GCNGC	5 cut(s)	98, 123, 241, 324, 630
FspBI	CTAG	3 cut(s)	338, 512, 783
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	5 cut(s)	98, 123, 241, 324, 630
GsuI	CTGGAG	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	2 cut(s)	66, 533
HgaI	GACGC	1 cut(s)	688
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	122, 140, 304, 348, 497, 531
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HinfI	GANTC	2 cut(s)	17, 143
HphI	GGTGA	4 cut(s)	152, 167, 328, 670
Hpy166II	GTNNAC	3 cut(s)	367, 381, 792
Hpy188I	TCNGA	3 cut(s)	16, 132, 763
Hpy188III	TCNNGA	4 cut(s)	434, 593, 830, 898
Hpy8I	GTNNAC	3 cut(s)	367, 381, 792
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	2 cut(s)	31, 137
HpyCH4III	ACNGT	6 cut(s)	43, 115, 364, 419, 664, 725
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	6 cut(s)	59, 100, 260, 350, 497, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 97, 246
HpyF3I	CTNAG	2 cut(s)	535, 633
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	6 cut(s)	122, 140, 304, 348, 497, 531
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	3 cut(s)	595, 826, 843
LmnI	GCTCC	2 cut(s)	549, 626
Lsp1109I	GCAGC	4 cut(s)	84, 109, 227, 335
LweI	GCATC	6 cut(s)	20, 46, 68, 217, 676, 757
MaeI	CTAG	3 cut(s)	338, 512, 783
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	107, 167, 658
MalI	GATC	3 cut(s)	597, 828, 845
MbiI	CCGCTC	1 cut(s)	629
MboI	GATC	3 cut(s)	595, 826, 843
MboII	GAAGA	4 cut(s)	656, 694, 719, 776
MluCI	AATT	4 cut(s)	193, 466, 478, 872
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	2 cut(s)	60, 420
MnlI	CCTC	6 cut(s)	43, 92, 96, 279, 307, 817
Mph1103I	ATGCAT	2 cut(s)	61, 262
MseI	TTAA	1 cut(s)	919
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	856
Mva1269I	GAATGC	1 cut(s)	577
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	72, 97, 246
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	3 cut(s)	595, 826, 843
NlaIII	CATG	6 cut(s)	122, 140, 304, 348, 497, 531
NlaIV	GGNNCC	3 cut(s)	6, 76, 591
NmuCI	GTSAC	2 cut(s)	167, 658
NsiI	ATGCAT	2 cut(s)	61, 262
NspI	RCATGY	2 cut(s)	348, 497
NspV	TTCGAA	1 cut(s)	705
OliI	CACNNNNGTG	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	497
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	5 cut(s)	99, 124, 242, 325, 631
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	590
PshAI	GACNNNNGTC	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	590
PspEI	GGTNACC	1 cut(s)	658
PspN4I	GGNNCC	3 cut(s)	6, 76, 591
PspPI	GGNCC	2 cut(s)	531, 590
PspPPI	RGGWCCY	1 cut(s)	590
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	919
SatI	GCNGC	5 cut(s)	98, 123, 241, 324, 630
Sau3AI	GATC	3 cut(s)	595, 826, 843
Sau96I	GGNCC	2 cut(s)	531, 590
SchI	GAGTC	1 cut(s)	11
SetI	ASST	8 cut(s)	35, 72, 162, 183, 318, 375, 554, 780
SfaNI	GCATC	6 cut(s)	20, 46, 68, 217, 676, 757
SfcI	CTRYAG	2 cut(s)	98, 771
SfuI	TTCGAA	1 cut(s)	705
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	398
SphI	GCATGC	1 cut(s)	497
Sse9I	AATT	4 cut(s)	193, 466, 478, 872
SsiI	CCGC	3 cut(s)	148, 629, 856
SspMI	CTAG	3 cut(s)	338, 512, 783
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	6 cut(s)	43, 115, 364, 419, 664, 725
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	3 cut(s)	666, 705, 727
TaqII	GACCGA	1 cut(s)	747
TasI	AATT	4 cut(s)	193, 466, 478, 872
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	919
Tru9I	TTAA	1 cut(s)	919
TscAI	CASTG	2 cut(s)	400, 458
TseFI	GTSAC	2 cut(s)	167, 658
TseI	GCWGC	4 cut(s)	97, 122, 240, 323
Tsp45I	GTSAC	2 cut(s)	167, 658
TspDTI	ATGAA	4 cut(s)	309, 459, 635, 657
TspRI	CASTG	2 cut(s)	400, 458
VpaK11BI	GGWCC	1 cut(s)	590
XceI	RCATGY	2 cut(s)	348, 497
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	3 cut(s)	338, 512, 783
Zsp2I	ATGCAT	2 cut(s)	61, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.