Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005438.1

Orthogroup ID

OG0001892

Physical Location & Seq

Genomic Coordinates Reverse (-)

1818 .. 3967

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggctcccgcagcttcgaatcctttcgacgaccaccacggcaccacgagctcgaacacagtctgcgtaatggatgcttcaggccacctcggctcgaccctcgtccagcgcctggttcagacgggatacacagtccacgccgcgcttcagagccatggggaatccaagttgggttcggtttcttgtgagaataacaagaggctgaagattttccatttagacccatttgattaccagagcatagttgatgctttgaagggctgttctggcttgttctacacttttgaacctccacaagatcagcccgactatgatgaatatatggcagaagtagaggtgagagctgcacacaacgttctagaagcatgtgcccgaacggaaaccatagacaaggttgtgttcacatcatcagtcaccgccgtcgtttggagcagtaacaataaatcgacggtcgctgctacgccggagttggacgaacggcactggactgacgtcaacttgtgtcgcaagttcaagctatggcatgccctatcaaaaaccctagcagagaagacagcgtgggcgttggcaatggataggagcttgaatatggtgtctatgaatgcagggttgatgataaatcccgacttgtccatcagcaacccgtacttgaagggagcggcggagatgtatgaagacgggctgctcgtgaccgtcgatataaatttcttagtggatgcccatatttgcgtcttcgaagacatcacagcctacggtcgatacttatgtttcaacaaaatcatcactcagtcgggagacgctgttgaccttgcccggaagttgaccccttctgccccggcctccttgccccaaagcaaggaccaggatatgagaatcatccaagagagaataagcaacaagaagttgaataagttgatggtgggtttcaagagtaactctcaaatgtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

316

Amino Acids

34.95

Weight (kDa)

5.67

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23910 AT2G23910 AT2G23910 AT2G23910 AT4G30470
fragaria_vesca	FvH4_5g22420 FvH4_5g22420 FvH4_5g22420
malus_domestica	MD00G1072500.v1.1 MD01G1237600.v1.1 MD06G1036600.v1.1 MD07G1310200.v1.1
prunus_persica	Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.5G032800_v2.0.a1
pyrus_communis	pycom01g24530 pycom06g03000 pycom13g28670
rosa_chinensis	RchiOBHm_Chr4g0405161 RchiOBHm_Chr7g0210161
rosa_laevigata	RLG00000003059 RLG00000008867
rosa_multiflora	Rmu_sc0005438.1_g000001 Rmu_sc0006908.1_g000015 Rmu_ssc0000255.1_g000034
rosa_roxburghii	Rroxscaffold_3G00248570 Rroxscaffold_5G00349400
rosa_rugosa	Rorug04G0054400 Rorug04G0054500 Rorug04G0054600 Rorug07G0119000
rosa_samantha	Rh1AG349400 Rh4AG129400 Rh4BG123100 Rh4CG136700 Rh4DG122900 Rh7AG252500 Rh7BG247600 Rh7CG269500 Rh7DG260100
rosa_wichuraiana	Rw0G002460 Rw1G031120 Rw4G010450 Rw7G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	659
AccII	CGCG	1 cut(s)	143
AciI	CCGC	5 cut(s)	9, 141, 417, 659, 662
AclI	AACGTT	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	3 cut(s)	63, 131, 224
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	3 cut(s)	112, 426, 856
AgsI	TTSAA	8 cut(s)	256, 287, 514, 586, 652, 772, 907, 928
AjnI	CCWGG	2 cut(s)	111, 861
AluBI	AGCT	5 cut(s)	14, 51, 344, 517, 582
AluI	AGCT	5 cut(s)	14, 51, 344, 517, 582
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	789
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	82, 837
ApeKI	GCWGC	4 cut(s)	11, 344, 455, 682
ApoI	RAATTY	1 cut(s)	703
Asp700I	GAANNNNTTC	2 cut(s)	23, 209
AspLEI	GCGC	2 cut(s)	111, 145
AspS9I	GGNCC	1 cut(s)	859
AsuC2I	CCSGG	2 cut(s)	814, 836
AsuHPI	GGTGA	2 cut(s)	349, 406
AsuII	TTCGAA	2 cut(s)	17, 735
AvaII	GGWCC	1 cut(s)	859
BaeGI	GKGCMC	1 cut(s)	373
BaeI	ACNNNNGTAYC	2 cut(s)	751, 784
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	53
BauI	CACGAG	2 cut(s)	46, 686
BbsI	GAAGAC	4 cut(s)	557, 681, 724, 744
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	23, 331, 442, 669
BccI	CCATC	2 cut(s)	641, 910
BceAI	ACGGC	3 cut(s)	55, 404, 494
BciT130I	CCWGG	2 cut(s)	113, 863
BciVI	GTATCC	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	814, 836
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	2 cut(s)	359, 542
BfoI	RGCGCY	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	6 cut(s)	12, 141, 345, 456, 660, 683
BlsI	GCNGC	6 cut(s)	13, 142, 346, 457, 661, 684
Bme1390I	CCNGG	4 cut(s)	113, 814, 836, 863
Bme18I	GGWCC	1 cut(s)	859
BmgT120I	GGNCC	1 cut(s)	859
BmiI	GGNNCC	2 cut(s)	6, 43
BmrFI	CCNGG	4 cut(s)	113, 814, 836, 863
BmsI	GCATC	3 cut(s)	64, 238, 706
BoxI	GACNNNNGTC	2 cut(s)	101, 491
BpiI	GAAGAC	4 cut(s)	557, 681, 724, 744
BplI	GAGNNNNNCTC	1 cut(s)	922
Bpu14I	TTCGAA	2 cut(s)	17, 735
BpuMI	CCSGG	2 cut(s)	814, 836
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	37, 88, 154, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 426, 856
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	113, 863
BseDI	CCNNGG	4 cut(s)	37, 88, 154, 834
BseGI	GGATG	3 cut(s)	79, 721, 876
BseLI	CCNNNNNNNGG	3 cut(s)	112, 426, 856
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	800
BseNI	ACTGG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	4 cut(s)	23, 331, 442, 669
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	2 cut(s)	453, 757
BshFI	GGCC	2 cut(s)	84, 839
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	2 cut(s)	453, 757
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	464, 814, 836
BslI	CCNNNNNNNGG	3 cut(s)	112, 426, 856
BsmAI	GTCTC	1 cut(s)	789
BsmBI	CGTCTC	1 cut(s)	789
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	84, 839
Bsp119I	TTCGAA	2 cut(s)	17, 735
Bsp1286I	GDGCHC	2 cut(s)	53, 373
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	5 cut(s)	9, 141, 417, 659, 662
BspANI	GGCC	2 cut(s)	84, 839
BspCNI	CTCAG	1 cut(s)	799
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	2 cut(s)	6, 43
BspT104I	TTCGAA	2 cut(s)	17, 735
BspT107I	GGYRCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	4 cut(s)	37, 88, 154, 834
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	492
BssSI	CACGAG	2 cut(s)	46, 686
BssT1I	CCWWGG	1 cut(s)	154
Bst2BI	CACGAG	2 cut(s)	46, 686
Bst2UI	CCWGG	2 cut(s)	113, 863
Bst4CI	ACNGT	5 cut(s)	61, 133, 451, 694, 755
BstACI	GRCGYC	1 cut(s)	492
BstBI	TTCGAA	2 cut(s)	17, 735
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	709, 786
BstDSI	CCRYGG	2 cut(s)	37, 154
BstF5I	GGATG	3 cut(s)	79, 721, 876
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	2 cut(s)	111, 145
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	2 cut(s)	453, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 48, 90, 267
BstNI	CCWGG	2 cut(s)	113, 863
BstNSI	RCATGY	2 cut(s)	369, 527
BstPAI	GACNNNNGTC	2 cut(s)	101, 491
BstSCI	CCNGG	4 cut(s)	111, 812, 834, 861
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	23, 331, 442, 669
BstV2I	GAAGAC	4 cut(s)	557, 681, 724, 744
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	84, 839
BtgI	CCRYGG	2 cut(s)	37, 154
BtsCI	GGATG	3 cut(s)	79, 721, 876
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	525
CaiI	CAGNNNCTG	1 cut(s)	112
CfoI	GCGC	2 cut(s)	111, 145
Cfr13I	GGNCC	1 cut(s)	859
CseI	GACGC	2 cut(s)	718, 806
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	3 cut(s)	155, 366, 524
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	2 cut(s)	709, 786
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	677
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	859
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	3 cut(s)	63, 131, 224
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	111, 861
EcoT14I	CCWWGG	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	789
FaeI	CATG	3 cut(s)	158, 369, 527
FatI	CATG	3 cut(s)	154, 365, 523
FauI	CCCGC	1 cut(s)	16
Fnu4HI	GCNGC	6 cut(s)	12, 141, 345, 456, 660, 683
FokI	GGATG	3 cut(s)	86, 728, 863
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	6 cut(s)	12, 141, 345, 456, 660, 683
FspBI	CTAG	2 cut(s)	359, 542
GlaI	GCGC	2 cut(s)	110, 144
GluI	GCNGC	6 cut(s)	12, 141, 345, 456, 660, 683
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	84, 839
HapII	CCGG	3 cut(s)	464, 814, 836
HgaI	GACGC	2 cut(s)	718, 806
HhaI	GCGC	2 cut(s)	111, 145
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	3 cut(s)	158, 369, 527
Hin6I	GCGC	2 cut(s)	109, 143
HinP1I	GCGC	2 cut(s)	109, 143
HincII	GTYRAC	3 cut(s)	496, 805, 822
HindII	GTYRAC	3 cut(s)	496, 805, 822
HinfI	GANTC	3 cut(s)	19, 161, 873
HpaII	CCGG	3 cut(s)	464, 814, 836
HphI	GGTGA	2 cut(s)	349, 406
Hpy166II	GTNNAC	5 cut(s)	136, 402, 496, 805, 822
Hpy188I	TCNGA	2 cut(s)	120, 150
Hpy188III	TCNNGA	5 cut(s)	359, 623, 688, 792, 928
Hpy8I	GTNNAC	5 cut(s)	136, 402, 496, 805, 822
Hpy99I	CGWCG	4 cut(s)	32, 425, 451, 698
HpyAV	CCTTC	3 cut(s)	250, 646, 837
HpyCH4III	ACNGT	5 cut(s)	61, 133, 451, 694, 755
HpyCH4IV	ACGT	2 cut(s)	354, 492
HpyCH4V	TGCA	2 cut(s)	347, 605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 48, 90, 267
HpyF3I	CTNAG	2 cut(s)	709, 786
HpySE526I	ACGT	2 cut(s)	354, 492
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	158, 369, 527
HspAI	GCGC	2 cut(s)	109, 143
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	4 cut(s)	10, 429, 579, 656
Lsp1109I	GCAGC	4 cut(s)	23, 331, 442, 669
LweI	GCATC	3 cut(s)	64, 238, 706
MaeI	CTAG	2 cut(s)	359, 542
MaeII	ACGT	2 cut(s)	354, 492
MaeIII	GTNAC	4 cut(s)	412, 434, 688, 932
MalI	GATC	1 cut(s)	300
MbiI	CCGCTC	1 cut(s)	659
MboI	GATC	1 cut(s)	298
MboII	GAAGA	5 cut(s)	217, 562, 686, 724, 749
MhlI	GDGCHC	2 cut(s)	53, 373
MluCI	AATT	1 cut(s)	703
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	6 cut(s)	98, 110, 192, 300, 328, 850
MroXI	GAANNNNTTC	2 cut(s)	23, 209
MspI	CCGG	3 cut(s)	464, 814, 836
MspR9I	CCNGG	4 cut(s)	113, 814, 836, 863
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	2 cut(s)	113, 863
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	11, 48, 90, 267
NciI	CCSGG	2 cut(s)	814, 836
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	158, 369, 527
NlaIV	GGNNCC	2 cut(s)	6, 43
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	412, 688
NspI	RCATGY	2 cut(s)	369, 527
NspV	TTCGAA	2 cut(s)	17, 735
PaeI	GCATGC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	2 cut(s)	684, 693
PctI	GAATGC	1 cut(s)	607
PdmI	GAANNNNTTC	2 cut(s)	23, 209
PfeI	GAWTC	3 cut(s)	19, 161, 873
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	6 cut(s)	13, 142, 346, 457, 661, 684
PshAI	GACNNNNGTC	2 cut(s)	101, 491
Psp124BI	GAGCTC	1 cut(s)	53
Psp1406I	AACGTT	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	111, 861
PspGI	CCWGG	2 cut(s)	111, 861
PspN4I	GGNNCC	2 cut(s)	6, 43
PspPI	GGNCC	1 cut(s)	859
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	6 cut(s)	12, 141, 345, 456, 660, 683
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	859
ScrFI	CCNGG	4 cut(s)	113, 814, 836, 863
SduI	GDGCHC	2 cut(s)	53, 373
SfaNI	GCATC	3 cut(s)	64, 238, 706
SfuI	TTCGAA	2 cut(s)	17, 735
SinI	GGWCC	1 cut(s)	859
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	1 cut(s)	703
SsiI	CCGC	5 cut(s)	9, 141, 417, 659, 662
SspMI	CTAG	2 cut(s)	359, 542
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	4 cut(s)	111, 812, 834, 861
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	5 cut(s)	61, 133, 451, 694, 755
TaiI	ACGT	2 cut(s)	357, 495
TaqI	TCGA	8 cut(s)	17, 27, 53, 95, 446, 696, 735, 757
TasI	AATT	1 cut(s)	703
TauI	GCSGC	2 cut(s)	143, 662
TfiI	GAWTC	3 cut(s)	19, 161, 873
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	2 cut(s)	412, 688
TseI	GCWGC	4 cut(s)	11, 344, 455, 682
Tsp45I	GTSAC	2 cut(s)	412, 688
TspDTI	ATGAA	3 cut(s)	330, 614, 687
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	488
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	859
XapI	RAATTY	1 cut(s)	703
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	2 cut(s)	369, 527
XmnI	GAANNNNTTC	2 cut(s)	23, 209
XspI	CTAG	2 cut(s)	359, 542
ZraI	GACGTC	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.