MD01G1237600.v1.1

Belongs to the 3-beta-HSD family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
32449565 .. 32451757
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1237600.v1.1.491

Sequence Viewer

Length: 1017 bp
ATGGCTCCTGCAGCAGAAGCTATTCGTAGTTTTGATGATGATGATGCTGCTGATGAAACTAGTCCATGTTCAAAGGTGACCACAGTCTGCGTCATGGATGCGTCCGGCCGCCTAGGCTCTACTCTTGTCCACCGCCTCTTGCACAGAGGCTATGCAGTCCATGCTGCACTCCAAAAGCATCACAAGTGTTTTGATGACGAATTGGTAAAGAAGAAGAAATTGAGGGTATTCCGTTCAGACCCCTTTGACTACCACAGCATTGTGGACGCCTTGAAAGGATGCTCTGCCCTTTTCTACTCCTTCGAGCCTCCTTCAGACCACCCCACTTATGATGAATTTATGGCAGAGGCAGAGGTGAGAGCAGCTCATAATGTGCTGGAAGCTTGTGCCCAAACTGATACCATACACAAAGTAGTCTTTACATCCTCTGTAACAGCTGTCATTTGGAGGGACGACCGTAATGCATCCTCGTCGGCGTCCTCCTCGTCCCGTGGCAGTGACGAGAGAAACTGGAGCGATGTCAATTTTTGTAGAAAATTCAAGCTCTGGCACGCCCTCTCCAAGACCCTGGCCGAGAGGACAGCGTGGGCTCTAGCAATGGACCGAGGACTGAACATGGTGTCCATCAATGGGGGGCTGTTGCTAGGCCCCGATCTCACCATCACGGACCCTTATCTGAAAGGAACGGCTGAGATGTACCAAGACGGGCTGTTGGTGACTGTAGATCTCAAGTTCATTGTGGACGCGCACATCTCCGTCTTTGAAGACGTGTCATCCTACGGAAGATACGTATGCTTCGACAGAGTCATCAATTGCCACAGAGATGCCGTTGAGCTTGCCCGCATGCTGTTGCCACCTTCTCAAACTTCATCTCTCCAAACGCAAAGCCAAAGCCCAAGCCAAAGCCAAAGTTTGGAGGAGGCAGAGACAATGGAGGTGTACCAACAGAAGATAAGTAACAAGAAACTCAACAAACTCATGGTCGACCTTGACACTGCCCTTCAACTCCGCGATTAA

Protein Analysis

339

Amino Acids

37.72

Weight (kDa)

5.64

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 27 - 144 8.5e-07 NmrA-like family
3Beta_HSD PF01073 31 - 148 1.2e-07 3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase PF01370 33 - 218 5.6e-07 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 34 - 146 9.5e-09 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 913
AccI GTMKAC 1 cut(s) 984
AccII CGCG 2 cut(s) 746, 1011
AciI CCGC 4 cut(s) 109, 133, 841, 1009
AcoI YGGCCR 2 cut(s) 106, 570
AcsI RAATTY 2 cut(s) 335, 536
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 2 cut(s) 267, 476
AfaI GTAC 2 cut(s) 698, 941
AfiI CCNNNNNNNGG 2 cut(s) 630, 913
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 5 cut(s) 72, 274, 541, 764, 1004
AhlI ACTAGT 1 cut(s) 59
AjiI CACGTC 1 cut(s) 769
AjnI CCWGG 1 cut(s) 567
AloI GAACNNNNNNTCC 2 cut(s) 605, 637
AluBI AGCT 6 cut(s) 20, 365, 383, 437, 544, 835
AluI AGCT 6 cut(s) 20, 365, 383, 437, 544, 835
Alw26I GTCTC 1 cut(s) 920
AoxI GGCC 3 cut(s) 106, 570, 646
ApeKI GCWGC 4 cut(s) 11, 47, 164, 362
ApoI RAATTY 2 cut(s) 335, 536
ArsI GACNNNNNNTTYG 2 cut(s) 966, 998
Asp700I GAANNNNTTC 1 cut(s) 21
AspA2I CCTAGG 1 cut(s) 112
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 3 cut(s) 601, 647, 667
AsuHPI GGTGA 4 cut(s) 88, 367, 649, 727
AvaII GGWCC 2 cut(s) 601, 667
AvrII CCTAGG 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 771
BbvI GCAGC 4 cut(s) 23, 34, 151, 374
BccI CCATC 2 cut(s) 632, 668
BceAI ACGGC 2 cut(s) 702, 812
BcgI CGANNNNNNTGC 4 cut(s) 443, 453, 477, 487
BciT130I CCWGG 1 cut(s) 569
BcoDI GTCTC 1 cut(s) 920
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 4 cut(s) 60, 113, 593, 644
BfmI CTRYAG 2 cut(s) 9, 720
BglI GCCNNNNNGGC 1 cut(s) 114
BglII AGATCT 1 cut(s) 724
BisI GCNGC 5 cut(s) 12, 48, 109, 165, 363
BlnI CCTAGG 1 cut(s) 112
BlsI GCNGC 5 cut(s) 13, 49, 110, 166, 364
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 2 cut(s) 601, 667
BmgBI CACGTC 1 cut(s) 769
BmgT120I GGNCC 3 cut(s) 601, 647, 667
BmiI GGNNCC 3 cut(s) 6, 649, 669
BmrFI CCNGG 1 cut(s) 569
BmsI GCATC 6 cut(s) 34, 88, 187, 269, 473, 814
BoxI GACNNNNGTC 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 771
BplI GAGNNNNNCTC 2 cut(s) 349, 381
BpmI CTGGAG 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 713
BsaAI YACGTR 1 cut(s) 790
BsaHI GRCGYC 2 cut(s) 267, 476
BsaJI CCNNGG 4 cut(s) 112, 490, 567, 604
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 913
Bse1I ACTGG 1 cut(s) 515
Bse3DI GCAATG 1 cut(s) 603
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 4 cut(s) 112, 490, 567, 604
BseGI GGATG 5 cut(s) 103, 284, 422, 464, 773
BseLI CCNNNNNNNGG 2 cut(s) 630, 913
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 2 cut(s) 472, 932
BseSI GKGCMC 1 cut(s) 391
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 4 cut(s) 23, 34, 151, 374
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 2 cut(s) 746, 1011
Bsh1285I CGRYCG 2 cut(s) 109, 457
BshFI GGCC 3 cut(s) 108, 572, 648
BsiEI CGRYCG 2 cut(s) 109, 457
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 2 cut(s) 464, 472
BslI CCNNNNNNNGG 2 cut(s) 630, 913
BsmAI GTCTC 1 cut(s) 920
BsmFI GGGAC 2 cut(s) 464, 472
BsnI GGCC 3 cut(s) 108, 572, 648
Bsp1286I GDGCHC 2 cut(s) 391, 592
Bsp143I GATC 2 cut(s) 652, 724
BspACI CCGC 4 cut(s) 109, 133, 841, 1009
BspANI GGCC 3 cut(s) 108, 572, 648
BspCNI CTCAG 1 cut(s) 682
BspFNI CGCG 2 cut(s) 746, 1011
BspLI GGNNCC 3 cut(s) 6, 649, 669
BspMAI CTGCAG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 515
BssECI CCNNGG 4 cut(s) 112, 490, 567, 604
BssMI GATC 2 cut(s) 652, 724
BssNI GRCGYC 2 cut(s) 267, 476
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 3 cut(s) 85, 458, 721
BstACI GRCGYC 2 cut(s) 267, 476
BstAPI GCANNNNNTGC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 790
BstC8I GCNNGC 4 cut(s) 552, 837, 841, 845
BstDEI CTNAG 1 cut(s) 690
BstDSI CCRYGG 1 cut(s) 490
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 5 cut(s) 103, 284, 422, 464, 773
BstFNI CGCG 2 cut(s) 746, 1011
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 2 cut(s) 655, 727
BstMAI GTCTC 1 cut(s) 920
BstMBI GATC 2 cut(s) 652, 724
BstMCI CGRYCG 2 cut(s) 109, 457
BstMWI GCNNNNNNNGC 4 cut(s) 11, 17, 114, 161
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 1 cut(s) 847
BstPAI GACNNNNGTC 1 cut(s) 83
BstPI GGTNACC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 567
BstSFI CTRYAG 2 cut(s) 9, 720
BstSLI GKGCMC 1 cut(s) 391
BstSNI TACGTA 1 cut(s) 790
BstUI CGCG 2 cut(s) 746, 1011
BstV1I GCAGC 4 cut(s) 23, 34, 151, 374
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 1 cut(s) 724
BstXI CCANNNNNNTGG 1 cut(s) 568
BstYI RGATCY 1 cut(s) 724
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 3 cut(s) 108, 572, 648
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 531
BtrI CACGTC 1 cut(s) 769
BtsCI GGATG 5 cut(s) 103, 284, 422, 464, 773
BtsI GCAGTG 2 cut(s) 502, 993
BtsIMutI CAGTG 2 cut(s) 502, 993
Cac8I GCNNGC 4 cut(s) 552, 837, 841, 845
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 3 cut(s) 601, 647, 667
CseI GACGC 5 cut(s) 79, 90, 275, 465, 752
Csp6I GTAC 2 cut(s) 697, 940
CviAII CATG 6 cut(s) 66, 94, 161, 616, 844, 979
CviQI GTAC 2 cut(s) 697, 940
DdeI CTNAG 1 cut(s) 690
DpnI GATC 2 cut(s) 654, 726
DpnII GATC 2 cut(s) 652, 724
EaeI YGGCCR 2 cut(s) 106, 570
EagI CGGCCG 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 106
Eco105I TACGTA 1 cut(s) 790
Eco130I CCWWGG 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 592
Eco47I GGWCC 2 cut(s) 601, 667
Eco52I CGGCCG 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 647
EcoO65I GGTNACC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 6 cut(s) 69, 97, 164, 619, 847, 982
FaqI GGGAC 2 cut(s) 464, 472
FatI CATG 6 cut(s) 65, 93, 160, 615, 843, 978
FauI CCCGC 1 cut(s) 848
FblI GTMKAC 1 cut(s) 984
Fnu4HI GCNGC 5 cut(s) 12, 48, 109, 165, 363
FokI GGATG 5 cut(s) 110, 291, 409, 451, 760
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 5 cut(s) 12, 48, 109, 165, 363
FspBI CTAG 4 cut(s) 60, 113, 593, 644
GlaI GCGC 1 cut(s) 747
GluI GCNGC 5 cut(s) 12, 48, 109, 165, 363
GsuI CTGGAG 1 cut(s) 532
HaeIII GGCC 3 cut(s) 108, 572, 648
HapII CCGG 1 cut(s) 105
HgaI GACGC 5 cut(s) 79, 90, 275, 465, 752
HhaI GCGC 1 cut(s) 748
Hin1I GRCGYC 2 cut(s) 267, 476
Hin1II CATG 6 cut(s) 69, 97, 164, 619, 847, 982
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HincII GTYRAC 1 cut(s) 985
HindII GTYRAC 1 cut(s) 985
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 1 cut(s) 804
HpaII CCGG 1 cut(s) 105
HphI GGTGA 4 cut(s) 88, 367, 649, 727
Hpy166II GTNNAC 5 cut(s) 130, 265, 742, 940, 985
Hpy188I TCNGA 3 cut(s) 238, 316, 678
Hpy8I GTNNAC 5 cut(s) 130, 265, 742, 940, 985
Hpy99I CGWCG 1 cut(s) 475
HpyAV CCTTC 4 cut(s) 310, 321, 867, 1010
HpyCH4III ACNGT 3 cut(s) 85, 458, 721
HpyCH4IV ACGT 2 cut(s) 768, 789
HpyCH4V TGCA 5 cut(s) 11, 142, 155, 167, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 17, 114, 161
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 2 cut(s) 768, 789
Hsp92I GRCGYC 2 cut(s) 267, 476
Hsp92II CATG 6 cut(s) 69, 97, 164, 619, 847, 982
HspAI GCGC 1 cut(s) 746
Kzo9I GATC 2 cut(s) 652, 724
LmnI GCTCC 2 cut(s) 10, 513
LpnPI CCDG 7 cut(s) 21, 118, 362, 496, 532, 554, 581
Lsp1109I GCAGC 4 cut(s) 23, 34, 151, 374
LweI GCATC 6 cut(s) 34, 88, 187, 269, 473, 814
MaeI CTAG 4 cut(s) 60, 113, 593, 644
MaeII ACGT 2 cut(s) 768, 789
MaeIII GTNAC 5 cut(s) 76, 430, 497, 715, 956
MalI GATC 2 cut(s) 654, 726
MboI GATC 2 cut(s) 652, 724
MboII GAAGA 5 cut(s) 223, 226, 776, 795, 961
MfeI CAATTG 1 cut(s) 811
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 391, 592
MluCI AATT 6 cut(s) 200, 218, 335, 523, 536, 811
MlyI GAGTC 1 cut(s) 813
Mph1103I ATGCAT 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 1015
MslI CAYNNNNRTG 1 cut(s) 822
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 569
MunI CAATTG 1 cut(s) 811
MvaI CCWGG 1 cut(s) 569
MvnI CGCG 2 cut(s) 746, 1011
MwoI GCNNNNNNNGC 4 cut(s) 11, 17, 114, 161
NdeII GATC 2 cut(s) 652, 724
NlaIII CATG 6 cut(s) 69, 97, 164, 619, 847, 982
NlaIV GGNNCC 3 cut(s) 6, 649, 669
NmeAIII GCCGAG 1 cut(s) 598
NmuCI GTSAC 3 cut(s) 76, 497, 715
NsiI ATGCAT 1 cut(s) 466
NspI RCATGY 1 cut(s) 847
PaeI GCATGC 1 cut(s) 847
PcsI WCGNNNNNNNCGW 2 cut(s) 786, 795
PdmI GAANNNNTTC 1 cut(s) 21
PflFI GACNNNGTC 1 cut(s) 803
PflMI CCANNNNNTGG 1 cut(s) 913
PkrI GCNGC 5 cut(s) 13, 49, 110, 166, 364
PleI GAGTC 1 cut(s) 812
PpsI GAGTC 1 cut(s) 812
Ppu21I YACGTR 1 cut(s) 790
PshAI GACNNNNGTC 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 567
PspEI GGTNACC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 3 cut(s) 6, 649, 669
PspPI GGNCC 3 cut(s) 601, 647, 667
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 724
PsyI GACNNNGTC 1 cut(s) 803
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 2 cut(s) 698, 941
RsaNI GTAC 2 cut(s) 697, 940
RseI CAYNNNNRTG 1 cut(s) 822
SalI GTCGAC 1 cut(s) 983
SaqAI TTAA 1 cut(s) 1015
SatI GCNGC 5 cut(s) 12, 48, 109, 165, 363
Sau3AI GATC 2 cut(s) 652, 724
Sau96I GGNCC 3 cut(s) 601, 647, 667
SchI GAGTC 1 cut(s) 813
ScrFI CCNGG 1 cut(s) 569
SduI GDGCHC 2 cut(s) 391, 592
SfaNI GCATC 6 cut(s) 34, 88, 187, 269, 473, 814
SfcI CTRYAG 2 cut(s) 9, 720
SinI GGWCC 2 cut(s) 601, 667
SmiMI CAYNNNNRTG 1 cut(s) 822
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SnaBI TACGTA 1 cut(s) 790
SpeI ACTAGT 1 cut(s) 59
SphI GCATGC 1 cut(s) 847
Sse9I AATT 6 cut(s) 200, 218, 335, 523, 536, 811
SsiI CCGC 4 cut(s) 109, 133, 841, 1009
SspMI CTAG 4 cut(s) 60, 113, 593, 644
StyD4I CCNGG 1 cut(s) 567
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 3 cut(s) 85, 458, 721
TaiI ACGT 2 cut(s) 771, 792
TaqI TCGA 3 cut(s) 303, 798, 984
TaqII GACCGA 1 cut(s) 618
TasI AATT 6 cut(s) 200, 218, 335, 523, 536, 811
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 1015
Tru9I TTAA 1 cut(s) 1015
TscAI CASTG 2 cut(s) 502, 1000
TseFI GTSAC 3 cut(s) 76, 497, 715
TseI GCWGC 4 cut(s) 11, 47, 164, 362
Tsp45I GTSAC 3 cut(s) 76, 497, 715
TspDTI ATGAA 4 cut(s) 69, 348, 724, 858
TspGWI ACGGA 4 cut(s) 221, 680, 745, 795
TspRI CASTG 2 cut(s) 502, 1000
Tth111I GACNNNGTC 1 cut(s) 803
Van91I CCANNNNNTGG 1 cut(s) 913
VpaK11BI GGWCC 2 cut(s) 601, 667
XapI RAATTY 2 cut(s) 335, 536
XceI RCATGY 1 cut(s) 847
XmaJI CCTAGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 984
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 4 cut(s) 60, 113, 593, 644
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.