Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001892

Physical Location & Seq

Genomic Coordinates Forward (+)

8566912 .. 8569649

Gene Structure 2738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0054400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAATGTGATTTTCCCTTGGATAGCAATTACATTTGATCATGATGTTTCGGGTACACATCGCAAAAATGGGTTGGAGAACAAGCTTAGGTATAAGCCAAATGATCGCATTTCCACCACAAAGTTGGATATGGGGTTTAGTGATTTTACAGGAACATATGCTTTGAAGAAACCCGGTCAAAAATACAGACAAGTCCATTGTGTCTCCCCATCTATTGAGCCCATTCTAGAATATATAGCCTCTGCAATGTCAAGGTCCACTGCACAGAAGCTTCTGGCCGGATTGGTTTTGTCAGTTCCTTTTTGCATTGTAGTACAAGGGAGAAGCTTTGAAAGGGCCAAGAGACTTGTATGTGTGTGGGGCTTTCAATGGACAAACCCTCGAGGAATCAATTACAACCTAGAAAATTTGGTGGAGTTCAAAGCAACTCTTGAACAGAATTTTCTCAAGGGAACGAAAGATCCCAAGCTTGATGGAAATCTAAAGACACAAAGAGAAGAAGGGTCTTTGATCAGTGTCAAAGTCAAGTTCTTTTCTAAGCTAGCTGTAGGTAAAGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

187

Amino Acids

21.16

Weight (kDa)

9.8

Isoelectric Point (pI)

20.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23910 AT2G23910 AT2G23910 AT2G23910 AT4G30470
fragaria_vesca	FvH4_5g22420 FvH4_5g22420 FvH4_5g22420
malus_domestica	MD00G1072500.v1.1 MD01G1237600.v1.1 MD06G1036600.v1.1 MD07G1310200.v1.1
prunus_persica	Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.5G032800_v2.0.a1
pyrus_communis	pycom01g24530 pycom06g03000 pycom13g28670
rosa_chinensis	RchiOBHm_Chr4g0405161 RchiOBHm_Chr7g0210161
rosa_laevigata	RLG00000003059 RLG00000008867
rosa_multiflora	Rmu_sc0005438.1_g000001 Rmu_sc0006908.1_g000015 Rmu_ssc0000255.1_g000034
rosa_roxburghii	Rroxscaffold_3G00248570 Rroxscaffold_5G00349400
rosa_rugosa	Rorug04G0054400 Rorug04G0054500 Rorug04G0054600 Rorug07G0119000
rosa_samantha	Rh1AG349400 Rh4AG129400 Rh4BG123100 Rh4CG136700 Rh4DG122900 Rh7AG252500 Rh7BG247600 Rh7CG269500 Rh7DG260100
rosa_wichuraiana	Rw0G002460 Rw1G031120 Rw4G010450 Rw7G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	381
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	406, 439
AfaI	GTAC	2 cut(s)	55, 315
AgsI	TTSAA	5 cut(s)	166, 332, 368, 421, 434
AloI	GAACNNNNNNTCC	2 cut(s)	445, 477
AluBI	AGCT	6 cut(s)	85, 271, 327, 469, 541, 545
AluI	AGCT	6 cut(s)	85, 271, 327, 469, 541, 545
Alw26I	GTCTC	2 cut(s)	208, 337
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	2 cut(s)	276, 336
ApoI	RAATTY	2 cut(s)	406, 439
AspS9I	GGNCC	2 cut(s)	255, 336
AsuC2I	CCSGG	1 cut(s)	174
AsuNHI	GCTAGC	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	222
BccI	CCATC	2 cut(s)	217, 467
BclI	TGATCA	2 cut(s)	37, 510
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	208, 337
BfaI	CTAG	3 cut(s)	227, 401, 542
BfmI	CTRYAG	1 cut(s)	546
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	255, 336
BmrFI	CCNGG	1 cut(s)	174
BmtI	GCTAGC	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	17
BseJI	GATNNNNATC	1 cut(s)	477
BseMI	GCAATG	1 cut(s)	252
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	278, 338
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	174, 279
BsmAI	GTCTC	2 cut(s)	208, 337
BsnI	GGCC	2 cut(s)	278, 338
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	4 cut(s)	37, 103, 460, 510
BspANI	GGCC	2 cut(s)	278, 338
BspHI	TCATGA	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	4 cut(s)	37, 103, 460, 510
BssT1I	CCWWGG	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	86, 537
BstKTI	GATC	4 cut(s)	40, 106, 463, 513
BstMAI	GTCTC	2 cut(s)	208, 337
BstMBI	GATC	4 cut(s)	37, 103, 460, 510
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	460
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	278, 338
BtgZI	GCGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	258, 520
Cac8I	GCNNGC	1 cut(s)	543
CciI	TCATGA	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	255, 336
Csp6I	GTAC	2 cut(s)	54, 314
CviAII	CATG	1 cut(s)	41
CviQI	GTAC	2 cut(s)	54, 314
DdeI	CTNAG	2 cut(s)	86, 537
DpnI	GATC	4 cut(s)	39, 105, 462, 512
DpnII	GATC	4 cut(s)	37, 103, 460, 510
EaeI	YGGCCR	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	1 cut(s)	44
FaiI	YATR	8 cut(s)	42, 93, 131, 157, 159, 234, 236, 352
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	1 cut(s)	40
FauNDI	CATATG	1 cut(s)	157
FbaI	TGATCA	2 cut(s)	37, 510
FriOI	GRGCYC	1 cut(s)	222
FspBI	CTAG	3 cut(s)	227, 401, 542
HaeIII	GGCC	2 cut(s)	278, 338
HapII	CCGG	2 cut(s)	174, 279
Hin1II	CATG	1 cut(s)	44
HindIII	AAGCTT	4 cut(s)	83, 269, 325, 467
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	2 cut(s)	174, 279
Hpy166II	GTNNAC	2 cut(s)	56, 258
Hpy188III	TCNNGA	3 cut(s)	41, 227, 431
Hpy8I	GTNNAC	2 cut(s)	56, 258
HpyAV	CCTTC	1 cut(s)	494
HpyCH4V	TGCA	3 cut(s)	245, 263, 306
HpyF3I	CTNAG	2 cut(s)	86, 537
Hsp92II	CATG	1 cut(s)	44
Ksp22I	TGATCA	2 cut(s)	37, 510
Kzo9I	GATC	4 cut(s)	37, 103, 460, 510
LpnPI	CCDG	4 cut(s)	135, 187, 260, 292
MaeI	CTAG	3 cut(s)	227, 401, 542
MalI	GATC	4 cut(s)	39, 105, 462, 512
MboI	GATC	4 cut(s)	37, 103, 460, 510
MboII	GAAGA	2 cut(s)	178, 509
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	27, 391, 406, 439
MmeI	TCCRAC	2 cut(s)	54, 105
MnlI	CCTC	3 cut(s)	250, 377, 390
MspI	CCGG	2 cut(s)	174, 279
MspR9I	CCNGG	1 cut(s)	174
NciI	CCSGG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	4 cut(s)	37, 103, 460, 510
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	381
PagI	TCATGA	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	255, 336
PspXI	VCTCGAGB	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	2 cut(s)	55, 315
RsaNI	GTAC	2 cut(s)	54, 314
Sau3AI	GATC	4 cut(s)	37, 103, 460, 510
Sau96I	GGNCC	2 cut(s)	255, 336
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	546
Sfr274I	CTCGAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	381, 446
SmoI	CTYRAG	2 cut(s)	381, 446
Sse9I	AATT	4 cut(s)	27, 391, 406, 439
SspMI	CTAG	3 cut(s)	227, 401, 542
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	17
TaqI	TCGA	1 cut(s)	382
TasI	AATT	4 cut(s)	27, 391, 406, 439
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	387
TscAI	CASTG	2 cut(s)	265, 520
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	265, 520
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	2 cut(s)	406, 439
XbaI	TCTAGA	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	3 cut(s)	227, 401, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.