pycom01g24530

Belongs to the 3-beta-HSD family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
21421905 .. 21424263
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g24530.3

Sequence Viewer

Length: 1215 bp
ATGGCATGGCATTGGTGGTGTCCCTACCCTTCTCCAAATTGTCCAACCCAACGCTCATCTTCCAAACTGTCTTTTTTATATATTATTAATGAGAGAGACCACACCACACTCTTTCTCAATACTCCCATTCATGATTCATCCATCCCTTTTTCAGAAATTCATATACGTCCCTCATTCCCATCCCATCCCATCCATCCATCGATGCCTCCTGCCGCAGAAGCTATTCGTAGTTTTGATGATGATGATGATGCTGATGAAACCAGTCCATGTTCAAAGACGACCACAGTCTGCGTCATGGATGCGTCCGGCCGCCTAGGCTCCACTCTCGTCCACCGCCTCTTGCACAGAGGCTATGCAGTCCATGCTGCACTCCAAAAGCATCACACAGAGTGTTTTGATGACGAATTGGTAAAGAAGAAGAAATTGAGAGTATTCCGTTCAGACCCTTTTGACTACCACAGCATTGTGGACGCCTTGAAAGGATGCTCTGCCCTTTTCTACTCCTTCGAGCCTCCTTCAGACCACCCCACTTATGATGAATTTATGGCAGAGGCAGAGGTGAGAGCAGCTCATAATGTGCTGGAAGCTTGTGCCCAAACCGATACCATACACAAAGTAGTCTTTACATCCTCTGTAACAGCTGTCATTTGGAGGGACGACCGTAATGCGTCGTCGGCGTCCTCCTCGTCCCGTGGCATTGATGATGAGAGAAACTGGAGCGATGTCAATTTTTGTAGACAATTCAAGCTCTGGCACGCCCTCTCCAAGACCCTGGCCGAGAGGACAGCGTGGGCTCTAGCAATGGACCGAGGACTGAACATGGTGTCCATCAATGGGGGGCTGTTGCTAGGCCCCGATCTCACCATCACGGACCCTTATCTGAAAGGAACGGCTGAGATGTACCAAGACGGGCTGTTGGTGACTGTTGATCTCAAGTCCATTGTGGACGCGCACATCTCCGTCTTTGAAGACGTGTCATCCTACGGAAGATATGTATGCTTCGACAGAGTCATCAATTGCTACAAAGATGCCGTTGAGCTTGCCCGCATGCTGTTGCCACCTTCTCAAACCTCATCTCTCCAAACGCAACCCCAAAGCCAAAGCCAAAGTTTGGAGGAGGCAGAGACAATGGTGGTGTACCAACAGAAGATAAGCAACAAGAAACTCAACAAACTCATGGTCAACTTTGACACTGCCCTTCAACTTCGCGATTAA

Protein Analysis

405

Amino Acids

45.56

Weight (kDa)

5.69

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1111
AccI GTMKAC 1 cut(s) 736
AccII CGCG 2 cut(s) 950, 1209
AciI CCGC 4 cut(s) 213, 310, 334, 1045
AcoI YGGCCR 2 cut(s) 307, 774
AcsI RAATTY 2 cut(s) 156, 539
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 2 cut(s) 471, 677
AdeI CACNNNGTG 1 cut(s) 390
AfaI GTAC 2 cut(s) 902, 1139
AfiI CCNNNNNNNGG 2 cut(s) 834, 1111
AflIII ACRYGT 1 cut(s) 972
AgsI TTSAA 5 cut(s) 273, 478, 745, 968, 1202
AjiI CACGTC 1 cut(s) 973
AjnI CCWGG 1 cut(s) 771
AloI GAACNNNNNNTCC 2 cut(s) 809, 841
AluBI AGCT 6 cut(s) 221, 569, 587, 641, 748, 1039
AluI AGCT 6 cut(s) 221, 569, 587, 641, 748, 1039
Alw26I GTCTC 2 cut(s) 90, 1118
AoxI GGCC 3 cut(s) 307, 774, 850
ApeKI GCWGC 2 cut(s) 365, 566
ApoI RAATTY 2 cut(s) 156, 539
ArsI GACNNNNNNTTYG 2 cut(s) 1164, 1196
AseI ATTAAT 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 222
AspA2I CCTAGG 1 cut(s) 313
AspLEI GCGC 1 cut(s) 952
AspS9I GGNCC 3 cut(s) 805, 851, 871
AsuHPI GGTGA 3 cut(s) 571, 853, 931
AvaII GGWCC 2 cut(s) 805, 871
AvrII CCTAGG 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 595
BanII GRGCYC 1 cut(s) 796
BbsI GAAGAC 1 cut(s) 975
BbvI GCAGC 2 cut(s) 352, 578
BccI CCATC 8 cut(s) 149, 187, 192, 197, 201, 205, 836, 872
BceAI ACGGC 2 cut(s) 906, 1016
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 1 cut(s) 773
BcoDI GTCTC 2 cut(s) 90, 1118
BfaI CTAG 3 cut(s) 314, 797, 848
BglI GCCNNNNNGGC 1 cut(s) 315
BisI GCNGC 4 cut(s) 213, 310, 366, 567
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 4 cut(s) 214, 311, 367, 568
Bme1390I CCNGG 1 cut(s) 773
Bme18I GGWCC 2 cut(s) 805, 871
BmgBI CACGTC 1 cut(s) 973
BmgT120I GGNCC 3 cut(s) 805, 851, 871
BmiI GGNNCC 3 cut(s) 319, 853, 873
BmrFI CCNGG 1 cut(s) 773
BmsI GCATC 6 cut(s) 192, 238, 289, 388, 473, 1018
BoxI GACNNNNGTC 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 975
BplI GAGNNNNNCTC 2 cut(s) 553, 585
BpmI CTGGAG 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 917
Bsa29I ATCGAT 1 cut(s) 200
BsaHI GRCGYC 2 cut(s) 471, 677
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 4 cut(s) 313, 691, 771, 808
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 834, 1111
Bse1I ACTGG 2 cut(s) 261, 719
Bse3DI GCAATG 1 cut(s) 807
BseBI CCWGG 1 cut(s) 773
BseCI ATCGAT 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 313, 691, 771, 808
BseLI CCNNNNNNNGG 2 cut(s) 834, 1111
BseMI GCAATG 1 cut(s) 807
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 2 cut(s) 261, 719
BseRI GAGGAG 2 cut(s) 673, 1130
BseSI GKGCMC 1 cut(s) 595
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 2 cut(s) 352, 578
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 2 cut(s) 950, 1209
Bsh1285I CGRYCG 2 cut(s) 310, 661
BshFI GGCC 3 cut(s) 309, 776, 852
BshVI ATCGAT 1 cut(s) 200
BsiEI CGRYCG 2 cut(s) 310, 661
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 4 cut(s) 6, 153, 668, 673
BslI CCNNNNNNNGG 2 cut(s) 834, 1111
BsmAI GTCTC 2 cut(s) 90, 1118
BsmFI GGGAC 4 cut(s) 6, 153, 668, 673
BsnI GGCC 3 cut(s) 309, 776, 852
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 595, 796
Bsp143I GATC 2 cut(s) 856, 928
Bsp68I TCGCGA 1 cut(s) 1209
BspACI CCGC 4 cut(s) 213, 310, 334, 1045
BspANI GGCC 3 cut(s) 309, 776, 852
BspCNI CTCAG 1 cut(s) 886
BspDI ATCGAT 1 cut(s) 200
BspFNI CGCG 2 cut(s) 950, 1209
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 319, 853, 873
BspTNI GGTCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 807
BsrI ACTGG 2 cut(s) 261, 719
BssECI CCNNGG 4 cut(s) 313, 691, 771, 808
BssMI GATC 2 cut(s) 856, 928
BssNI GRCGYC 2 cut(s) 471, 677
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 773
Bst4CI ACNGT 4 cut(s) 69, 286, 662, 925
BstACI GRCGYC 2 cut(s) 471, 677
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 4 cut(s) 756, 1041, 1045, 1049
BstDEI CTNAG 1 cut(s) 894
BstDSI CCRYGG 1 cut(s) 691
BstFNI CGCG 2 cut(s) 950, 1209
BstHHI GCGC 1 cut(s) 952
BstKTI GATC 2 cut(s) 859, 931
BstMAI GTCTC 2 cut(s) 90, 1118
BstMBI GATC 2 cut(s) 856, 928
BstMCI CGRYCG 2 cut(s) 310, 661
BstMWI GCNNNNNNNGC 4 cut(s) 218, 315, 362, 674
BstNI CCWGG 1 cut(s) 773
BstNSI RCATGY 1 cut(s) 1051
BstPAI GACNNNNGTC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 771
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 2 cut(s) 950, 1209
BstV1I GCAGC 2 cut(s) 352, 578
BstV2I GAAGAC 1 cut(s) 975
BstXI CCANNNNNNTGG 1 cut(s) 772
BstZI CGGCCG 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 200
BsuRI GGCC 3 cut(s) 309, 776, 852
BsuTUI ATCGAT 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 691
BtgZI GCGATG 1 cut(s) 735
BtrI CACGTC 1 cut(s) 973
BtsI GCAGTG 1 cut(s) 1191
BtsIMutI CAGTG 1 cut(s) 1191
BtuMI TCGCGA 1 cut(s) 1209
Cac8I GCNNGC 4 cut(s) 756, 1041, 1045, 1049
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 952
Cfr13I GGNCC 3 cut(s) 805, 851, 871
ClaI ATCGAT 1 cut(s) 200
CseI GACGC 6 cut(s) 280, 291, 479, 657, 666, 956
Csp6I GTAC 2 cut(s) 901, 1138
CviAII CATG 8 cut(s) 6, 131, 267, 295, 362, 820, 1048, 1177
CviQI GTAC 2 cut(s) 901, 1138
DdeI CTNAG 1 cut(s) 894
DpnI GATC 2 cut(s) 858, 930
DpnII GATC 2 cut(s) 856, 928
DraIII CACNNNGTG 1 cut(s) 390
EaeI YGGCCR 2 cut(s) 307, 774
EagI CGGCCG 1 cut(s) 307
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 796
Eco31I GGTCTC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 805, 871
Eco52I CGGCCG 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 851
EcoRII CCWGG 1 cut(s) 771
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 796
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 8 cut(s) 9, 134, 270, 298, 365, 823, 1051, 1180
FaqI GGGAC 4 cut(s) 6, 153, 668, 673
FatI CATG 8 cut(s) 5, 130, 266, 294, 361, 819, 1047, 1176
FauI CCCGC 1 cut(s) 1052
FblI GTMKAC 1 cut(s) 736
Fnu4HI GCNGC 4 cut(s) 213, 310, 366, 567
FriOI GRGCYC 1 cut(s) 796
Fsp4HI GCNGC 4 cut(s) 213, 310, 366, 567
FspBI CTAG 3 cut(s) 314, 797, 848
GlaI GCGC 1 cut(s) 951
GluI GCNGC 4 cut(s) 213, 310, 366, 567
GsuI CTGGAG 1 cut(s) 736
HaeIII GGCC 3 cut(s) 309, 776, 852
HapII CCGG 1 cut(s) 306
HgaI GACGC 6 cut(s) 280, 291, 479, 657, 666, 956
HhaI GCGC 1 cut(s) 952
Hin1I GRCGYC 2 cut(s) 471, 677
Hin1II CATG 8 cut(s) 9, 134, 270, 298, 365, 823, 1051, 1180
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 2 cut(s) 134, 1008
HpaII CCGG 1 cut(s) 306
HphI GGTGA 3 cut(s) 571, 853, 931
Hpy166II GTNNAC 6 cut(s) 331, 469, 737, 946, 1138, 1183
Hpy188I TCNGA 4 cut(s) 154, 442, 520, 882
Hpy188III TCNNGA 2 cut(s) 131, 1208
Hpy8I GTNNAC 6 cut(s) 331, 469, 737, 946, 1138, 1183
Hpy99I CGWCG 2 cut(s) 673, 676
HpyAV CCTTC 5 cut(s) 39, 514, 525, 1071, 1208
HpyCH4III ACNGT 4 cut(s) 69, 286, 662, 925
HpyCH4IV ACGT 2 cut(s) 166, 972
HpyCH4V TGCA 3 cut(s) 343, 356, 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 315, 362, 674
HpyF3I CTNAG 1 cut(s) 894
HpySE526I ACGT 2 cut(s) 166, 972
Hsp92I GRCGYC 2 cut(s) 471, 677
Hsp92II CATG 8 cut(s) 9, 134, 270, 298, 365, 823, 1051, 1180
HspAI GCGC 1 cut(s) 950
Kzo9I GATC 2 cut(s) 856, 928
LmnI GCTCC 2 cut(s) 323, 717
LpnPI CCDG 8 cut(s) 222, 274, 319, 566, 700, 736, 758, 785
Lsp1109I GCAGC 2 cut(s) 352, 578
LweI GCATC 6 cut(s) 192, 238, 289, 388, 473, 1018
MaeI CTAG 3 cut(s) 314, 797, 848
MaeII ACGT 2 cut(s) 166, 972
MaeIII GTNAC 2 cut(s) 634, 919
MalI GATC 2 cut(s) 858, 930
MboI GATC 2 cut(s) 856, 928
MboII GAAGA 6 cut(s) 51, 427, 430, 980, 999, 1159
MfeI CAATTG 1 cut(s) 1015
MhlI GDGCHC 2 cut(s) 595, 796
MluCI AATT 8 cut(s) 37, 156, 404, 422, 539, 727, 740, 1015
MlyI GAGTC 1 cut(s) 1017
MmeI TCCRAC 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 2 cut(s) 87, 1213
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 773
MunI CAATTG 1 cut(s) 1015
MvaI CCWGG 1 cut(s) 773
MvnI CGCG 2 cut(s) 950, 1209
MwoI GCNNNNNNNGC 4 cut(s) 218, 315, 362, 674
NdeII GATC 2 cut(s) 856, 928
NlaIII CATG 8 cut(s) 9, 134, 270, 298, 365, 823, 1051, 1180
NlaIV GGNNCC 3 cut(s) 319, 853, 873
NmeAIII GCCGAG 1 cut(s) 802
NmuCI GTSAC 1 cut(s) 919
NruI TCGCGA 1 cut(s) 1209
NspI RCATGY 1 cut(s) 1051
PaeI GCATGC 1 cut(s) 1051
PagI TCATGA 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 134
PflFI GACNNNGTC 1 cut(s) 1007
PflMI CCANNNNNTGG 1 cut(s) 1111
PkrI GCNGC 4 cut(s) 214, 311, 367, 568
PleI GAGTC 1 cut(s) 1016
PpsI GAGTC 1 cut(s) 1016
PshAI GACNNNNGTC 1 cut(s) 284
PshBI ATTAAT 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 771
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 3 cut(s) 319, 853, 873
PspPI GGNCC 3 cut(s) 805, 851, 871
PsyI GACNNNGTC 1 cut(s) 1007
PvuII CAGCTG 1 cut(s) 641
RruI TCGCGA 1 cut(s) 1209
RsaI GTAC 2 cut(s) 902, 1139
RsaNI GTAC 2 cut(s) 901, 1138
SaqAI TTAA 2 cut(s) 87, 1213
SatI GCNGC 4 cut(s) 213, 310, 366, 567
Sau3AI GATC 2 cut(s) 856, 928
Sau96I GGNCC 3 cut(s) 805, 851, 871
SchI GAGTC 1 cut(s) 1017
ScrFI CCNGG 1 cut(s) 773
SduI GDGCHC 2 cut(s) 595, 796
SfaNI GCATC 6 cut(s) 192, 238, 289, 388, 473, 1018
SinI GGWCC 2 cut(s) 805, 871
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
SphI GCATGC 1 cut(s) 1051
Sse9I AATT 8 cut(s) 37, 156, 404, 422, 539, 727, 740, 1015
SsiI CCGC 4 cut(s) 213, 310, 334, 1045
SspMI CTAG 3 cut(s) 314, 797, 848
StyD4I CCNGG 1 cut(s) 771
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 4 cut(s) 69, 286, 662, 925
TaiI ACGT 2 cut(s) 169, 975
TaqI TCGA 3 cut(s) 200, 507, 1002
TaqII GACCGA 1 cut(s) 822
TasI AATT 8 cut(s) 37, 156, 404, 422, 539, 727, 740, 1015
TauI GCSGC 2 cut(s) 215, 312
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 2 cut(s) 87, 1213
Tru9I TTAA 2 cut(s) 87, 1213
TscAI CASTG 1 cut(s) 1198
TseFI GTSAC 1 cut(s) 919
TseI GCWGC 2 cut(s) 365, 566
Tsp45I GTSAC 1 cut(s) 919
TspDTI ATGAA 5 cut(s) 119, 126, 149, 270, 552
TspGWI ACGGA 4 cut(s) 425, 884, 949, 999
TspRI CASTG 1 cut(s) 1198
Tth111I GACNNNGTC 1 cut(s) 1007
Van91I CCANNNNNTGG 1 cut(s) 1111
VpaK11BI GGWCC 2 cut(s) 805, 871
VspI ATTAAT 1 cut(s) 87
XapI RAATTY 2 cut(s) 156, 539
XceI RCATGY 1 cut(s) 1051
XmaJI CCTAGG 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 736
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 3 cut(s) 314, 797, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.