Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001892

Physical Location & Seq

Genomic Coordinates Forward (+)

22374517 .. 22376666

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAGAAGGAAGAAGAGAGATTAGTAGTTTTCTCTGTTGATGTTTTGGATTATCATAGCATTCTTTTGGCTTTGAAAGGTTGCTCTGCTGTGTTCTGTTGTCTAGACAGTCCAGAAGCATATGATGTACTTATACACAGAGCGTGGAGAAGATTTTGTTCTCTTTCTTCATTGGCTGCAGCAATATGGAAGGAGGACATTTCATCAGAGAAGGATGTGGATGAAAAGTCATGGAGTGATCCAGAATTCTGCAGGAAATTGAAGTTGTGGTATGCCTTAGCAAAGACACAATCGGAACAGGCTGCTTGGGCTCTATCAATGGACCGGACTCTTAACATGGTCTCTATAAATTCTGGACTAGTCCTTGGGCCTAGTGTCACACAACAAAATCCGCAAACAACCATGTCATATCTTAACGGAGCTGCTCAAATGTATGAAAATGGTGTACTAGCATTTGTCGACGTGGACTTTCTTGTAAATGTTCATATTCGAGCTCTAGAGGACCAGTCTGCTTGCGGGAGATATTTCTGCTTCAGTCACATAGTGAATACTGAGGACGAAGCTGTTAAGCTTGCACAGAGCTTAAGTCCTCTAATATCTTTACCACCAAGGTATCATTACGAAGGGAGTGAGGCACATACCGAGCGATTGAGGACTAAGAAGTTGAGCAAGCTGGTTGAGGGAGCTGCCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

231

Amino Acids

26.04

Weight (kDa)

5.29

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23910 AT2G23910 AT2G23910 AT2G23910 AT4G30470
fragaria_vesca	FvH4_5g22420 FvH4_5g22420 FvH4_5g22420
malus_domestica	MD00G1072500.v1.1 MD01G1237600.v1.1 MD06G1036600.v1.1 MD07G1310200.v1.1
prunus_persica	Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.5G032800_v2.0.a1
pyrus_communis	pycom01g24530 pycom06g03000 pycom13g28670
rosa_chinensis	RchiOBHm_Chr4g0405161 RchiOBHm_Chr7g0210161
rosa_laevigata	RLG00000003059 RLG00000008867
rosa_multiflora	Rmu_sc0005438.1_g000001 Rmu_sc0006908.1_g000015 Rmu_ssc0000255.1_g000034
rosa_roxburghii	Rroxscaffold_3G00248570 Rroxscaffold_5G00349400
rosa_rugosa	Rorug04G0054400 Rorug04G0054500 Rorug04G0054600 Rorug07G0119000
rosa_samantha	Rh1AG349400 Rh4AG129400 Rh4BG123100 Rh4CG136700 Rh4DG122900 Rh7AG252500 Rh7BG247600 Rh7CG269500 Rh7DG260100
rosa_wichuraiana	Rw0G002460 Rw1G031120 Rw4G010450 Rw7G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	2 cut(s)	392, 516
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	245, 349
AcuI	CTGAAG	1 cut(s)	517
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	2 cut(s)	129, 447
AflII	CTTAAG	1 cut(s)	583
AgsI	TTSAA	2 cut(s)	76, 262
AhlI	ACTAGT	1 cut(s)	358
AjiI	CACGTC	1 cut(s)	463
AluBI	AGCT	7 cut(s)	422, 494, 563, 571, 582, 673, 686
AluI	AGCT	7 cut(s)	422, 494, 563, 571, 582, 673, 686
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	5 cut(s)	176, 179, 302, 422, 686
ApoI	RAATTY	2 cut(s)	245, 349
AspS9I	GGNCC	3 cut(s)	322, 368, 502
AvaII	GGWCC	2 cut(s)	322, 502
BaeI	ACNNNNGTAYC	2 cut(s)	596, 629
BanII	GRGCYC	2 cut(s)	313, 496
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	5 cut(s)	163, 191, 289, 409, 673
BcoDI	GTCTC	1 cut(s)	346
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	5 cut(s)	104, 359, 372, 449, 497
BfmI	CTRYAG	2 cut(s)	177, 250
BfrI	CTTAAG	1 cut(s)	583
BisI	GCNGC	5 cut(s)	177, 180, 303, 423, 687
BlsI	GCNGC	5 cut(s)	178, 181, 304, 424, 688
Bme18I	GGWCC	2 cut(s)	322, 502
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	3 cut(s)	322, 368, 502
Bpu10I	CCTNAGC	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	364, 608
BsaWI	WCCGGW	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	364, 608
BseGI	GGATG	2 cut(s)	220, 226
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	505
BseXI	GCAGC	5 cut(s)	163, 191, 289, 409, 673
BshFI	GGCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	370
Bso31I	GGTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	313, 496
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	392, 516
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	544
BspMAI	CTGCAG	2 cut(s)	181, 254
BspPI	GGATC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	364, 608
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	2 cut(s)	364, 608
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	9
BstAFI	CTTAAG	1 cut(s)	583
BstC8I	GCNNGC	3 cut(s)	514, 573, 671
BstDEI	CTNAG	3 cut(s)	277, 552, 657
BstF5I	GGATG	2 cut(s)	220, 226
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSFI	CTRYAG	2 cut(s)	177, 250
BstV1I	GCAGC	5 cut(s)	163, 191, 289, 409, 673
BsuRI	GGCC	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	220, 226
Cac8I	GCNNGC	3 cut(s)	514, 573, 671
Cfr13I	GGNCC	3 cut(s)	322, 368, 502
Csp6I	GTAC	2 cut(s)	128, 446
CviAII	CATG	3 cut(s)	231, 337, 403
CviQI	GTAC	2 cut(s)	128, 446
DdeI	CTNAG	3 cut(s)	277, 552, 657
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraIII	CACNNNGTG	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	494
Eco130I	CCWWGG	2 cut(s)	364, 608
Eco24I	GRGCYC	2 cut(s)	313, 496
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	322, 502
Eco53kI	GAGCTC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	517
EcoICRI	GAGCTC	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	245
EcoT14I	CCWWGG	2 cut(s)	364, 608
EcoT38I	GRGCYC	2 cut(s)	313, 496
ErhI	CCWWGG	2 cut(s)	364, 608
FaeI	CATG	3 cut(s)	234, 340, 406
FatI	CATG	3 cut(s)	230, 336, 402
FauI	CCCGC	1 cut(s)	509
FauNDI	CATATG	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	5 cut(s)	177, 180, 303, 423, 687
FokI	GGATG	2 cut(s)	227, 233
FriOI	GRGCYC	2 cut(s)	313, 496
Fsp4HI	GCNGC	5 cut(s)	177, 180, 303, 423, 687
FspBI	CTAG	5 cut(s)	104, 359, 372, 449, 497
GluI	GCNGC	5 cut(s)	177, 180, 303, 423, 687
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	3 cut(s)	234, 340, 406
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	325
Hpy166II	GTNNAC	3 cut(s)	446, 460, 466
Hpy188I	TCNGA	2 cut(s)	208, 295
Hpy188III	TCNNGA	5 cut(s)	104, 113, 242, 354, 497
Hpy8I	GTNNAC	3 cut(s)	446, 460, 466
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	3 cut(s)	184, 205, 617
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	179, 252, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	3 cut(s)	277, 552, 657
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	234, 340, 406
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	419, 683
LpnPI	CCDG	8 cut(s)	126, 238, 255, 284, 338, 339, 518, 659
Lsp1109I	GCAGC	5 cut(s)	163, 191, 289, 409, 673
MaeI	CTAG	5 cut(s)	104, 359, 372, 449, 497
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	376, 536
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	4 cut(s)	23, 26, 159, 162
MhlI	GDGCHC	2 cut(s)	313, 496
MluCI	AATT	3 cut(s)	245, 257, 349
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	7 cut(s)	187, 493, 547, 600, 625, 645, 673
MseI	TTAA	4 cut(s)	333, 414, 567, 584
MspCI	CTTAAG	1 cut(s)	583
MspI	CCGG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	234, 340, 406
NmuCI	GTSAC	2 cut(s)	376, 536
PctI	GAATGC	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	178, 181, 304, 424, 688
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	496
PspPI	GGNCC	3 cut(s)	322, 368, 502
PstI	CTGCAG	2 cut(s)	181, 254
RsaI	GTAC	2 cut(s)	129, 447
RsaNI	GTAC	2 cut(s)	128, 446
SacI	GAGCTC	1 cut(s)	496
SalI	GTCGAC	1 cut(s)	458
SaqAI	TTAA	4 cut(s)	333, 414, 567, 584
SatI	GCNGC	5 cut(s)	177, 180, 303, 423, 687
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	3 cut(s)	322, 368, 502
SchI	GAGTC	1 cut(s)	322
SduI	GDGCHC	2 cut(s)	313, 496
SfcI	CTRYAG	2 cut(s)	177, 250
SinI	GGWCC	2 cut(s)	322, 502
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	3 cut(s)	245, 257, 349
SsiI	CCGC	2 cut(s)	392, 516
SspMI	CTAG	5 cut(s)	104, 359, 372, 449, 497
SstI	GAGCTC	1 cut(s)	496
StyI	CCWWGG	2 cut(s)	364, 608
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	459, 490
TasI	AATT	3 cut(s)	245, 257, 349
TatI	WGTACW	2 cut(s)	127, 445
Tru1I	TTAA	4 cut(s)	333, 414, 567, 584
Tru9I	TTAA	4 cut(s)	333, 414, 567, 584
TseFI	GTSAC	2 cut(s)	376, 536
TseI	GCWGC	5 cut(s)	176, 179, 302, 422, 686
Tsp45I	GTSAC	2 cut(s)	376, 536
TspDTI	ATGAA	5 cut(s)	159, 192, 237, 450, 473
TspGWI	ACGGA	1 cut(s)	432
Vha464I	CTTAAG	1 cut(s)	583
VpaK11BI	GGWCC	2 cut(s)	322, 502
XapI	RAATTY	2 cut(s)	245, 349
XbaI	TCTAGA	2 cut(s)	103, 496
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	5 cut(s)	104, 359, 372, 449, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.