Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001892

Physical Location & Seq

Genomic Coordinates Reverse (-)

41446896 .. 41449065

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008867

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAGTACGACAAACCCACAGTTTGTGTTCTTGATGCTTCAACCTACGTTGGCTTTTGGATTCTCAAAGGATTACTTGCTCGAGGCTTCAGAGTTCACGCAGCTACCCAGAAGAATGGGGAAGCAGAGATTCAGAAGAGAATTAGGGAAATGGAGAAAGAAGAAGAGAGATTAGTAGTTTTCTCTGTTGATATTTTGGATTATCATAGCATTCTTTTGGCATTGAAAGGTTGCTCTGCTGTGTTCTGTTGTCTAGACAGTCCAGAAGCATACGATGAAAAAATGGTGAATTTGGAGGTGAGAGGAGCAATAAACATTGTTGAAGCATGTTCTCAGACGGAGAGCGTGGAGAAGATTTTGTTATCTTCTTCATTGGCTGCAGCAATATGGAAGGAGGACATTTCTTCAGAGAAGGATGTGGATGAAAAGTCGTGGAGTGATCCAGAATTTTGCAGGAAATTGAAGTTGTGGTATGCCTTAGCAAAGACACAATCGGAACAGGCTGCTTGGGCGCTGTCAATGGATCGGACTCTTAAGATGATCTCTATAAATTCTGGACTAGTCATTGGACCCGGTGTCGCACAACAAAATCCGCGAACAACTATGTCATATCTTAACGGAGCTGCTCAAATGTATGAAAATGGTGTACTAGCATTTGTTGACGTGGACTTTCTTGTAAATGTTCATATTCGCGCTCTGGAGGACCAGTCTGCTTGTGGGAGATATTTCTGCTTCAGTCAGATAGTGAATACTGAGGCCGAAGCTGTTAAGCTTGCACAGAGCTTGAGTCCTTTAATGTCTTTACCGCCAAGGTATCATTACGAAGGGAGTGAGGCACATACCGAGCGATTGAGGACTAAGAAGTTGAGCAAGCTGGTTGAGGGAGCTGCCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

299

Amino Acids

33.35

Weight (kDa)

5.54

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
3Beta_HSD	PF01073	12 - 230	2.4e-06	3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase	PF01370	13 - 213	1.3e-09	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	17 - 128	4.3e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23910 AT2G23910 AT2G23910 AT2G23910 AT4G30470
fragaria_vesca	FvH4_5g22420 FvH4_5g22420 FvH4_5g22420
malus_domestica	MD00G1072500.v1.1 MD01G1237600.v1.1 MD06G1036600.v1.1 MD07G1310200.v1.1
prunus_persica	Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.5G032800_v2.0.a1
pyrus_communis	pycom01g24530 pycom06g03000 pycom13g28670
rosa_chinensis	RchiOBHm_Chr4g0405161 RchiOBHm_Chr7g0210161
rosa_laevigata	RLG00000003059 RLG00000008867
rosa_multiflora	Rmu_sc0005438.1_g000001 Rmu_sc0006908.1_g000015 Rmu_ssc0000255.1_g000034
rosa_roxburghii	Rroxscaffold_3G00248570 Rroxscaffold_5G00349400
rosa_rugosa	Rorug04G0054400 Rorug04G0054500 Rorug04G0054600 Rorug07G0119000
rosa_samantha	Rh1AG349400 Rh4AG129400 Rh4BG123100 Rh4CG136700 Rh4DG122900 Rh7AG252500 Rh7BG247600 Rh7CG269500 Rh7DG260100
rosa_wichuraiana	Rw0G002460 Rw1G031120 Rw4G010450 Rw7G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	595, 693
AciI	CCGC	2 cut(s)	593, 806
AclWI	GGATC	2 cut(s)	434, 531
AcsI	RAATTY	3 cut(s)	289, 446, 550
AcuI	CTGAAG	3 cut(s)	73, 390, 718
AfaI	GTAC	2 cut(s)	8, 648
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	4 cut(s)	42, 226, 323, 463
AhdI	GACNNNNNGTC	1 cut(s)	575
AhlI	ACTAGT	1 cut(s)	559
AjiI	CACGTC	1 cut(s)	664
AluBI	AGCT	7 cut(s)	104, 623, 764, 772, 783, 874, 887
AluI	AGCT	7 cut(s)	104, 623, 764, 772, 783, 874, 887
AlwI	GGATC	2 cut(s)	434, 531
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	1 cut(s)	756
ApeKI	GCWGC	6 cut(s)	101, 377, 380, 503, 623, 887
ApoI	RAATTY	3 cut(s)	289, 446, 550
AspLEI	GCGC	2 cut(s)	514, 695
AspS9I	GGNCC	2 cut(s)	569, 703
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	2 cut(s)	298, 310
AvaI	CYCGRG	1 cut(s)	81
AvaII	GGWCC	2 cut(s)	569, 703
BbvI	GCAGC	6 cut(s)	113, 364, 392, 490, 610, 874
BcnI	CCSGG	1 cut(s)	573
BcuI	ACTAGT	1 cut(s)	559
BfaI	CTAG	3 cut(s)	254, 560, 650
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	515
BfrI	CTTAAG	1 cut(s)	533
BisI	GCNGC	6 cut(s)	102, 378, 381, 504, 624, 888
BlsI	GCNGC	6 cut(s)	103, 379, 382, 505, 625, 889
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	2 cut(s)	569, 703
BmeRI	GACNNNNNGTC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	81
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	569, 703
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	719
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	805
BpuMI	CCSGG	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	809
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bse1I	ACTGG	1 cut(s)	706
BseDI	CCNNGG	1 cut(s)	809
BseGI	GGATG	2 cut(s)	421, 427
BseMII	CTCAG	2 cut(s)	347, 744
BseNI	ACTGG	1 cut(s)	706
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	6 cut(s)	113, 364, 392, 490, 610, 874
Bsh1236I	CGCG	2 cut(s)	595, 693
BshFI	GGCC	1 cut(s)	758
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	758
BsoBI	CYCGRG	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	439, 523, 540
BspACI	CCGC	2 cut(s)	593, 806
BspANI	GGCC	1 cut(s)	758
BspCNI	CTCAG	2 cut(s)	346, 745
BspFNI	CGCG	2 cut(s)	595, 693
BspLI	GGNNCC	1 cut(s)	571
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	2 cut(s)	434, 531
BspTI	CTTAAG	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	706
BssECI	CCNNGG	1 cut(s)	809
BssMI	GATC	3 cut(s)	439, 523, 540
BssT1I	CCWWGG	1 cut(s)	809
Bst4CI	ACNGT	2 cut(s)	22, 260
Bst6I	CTCTTC	2 cut(s)	131, 159
BstAFI	CTTAAG	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	774, 872
BstDEI	CTNAG	4 cut(s)	333, 478, 753, 858
BstF5I	GGATG	2 cut(s)	421, 427
BstFNI	CGCG	2 cut(s)	595, 693
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	2 cut(s)	514, 695
BstKTI	GATC	3 cut(s)	442, 526, 543
BstMBI	GATC	3 cut(s)	439, 523, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	2 cut(s)	595, 693
BstV1I	GCAGC	6 cut(s)	113, 364, 392, 490, 610, 874
BstXI	CCANNNNNNTGG	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	758
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	421, 427
Cac8I	GCNNGC	2 cut(s)	774, 872
CfoI	GCGC	2 cut(s)	514, 695
Cfr13I	GGNCC	2 cut(s)	569, 703
Csp6I	GTAC	2 cut(s)	7, 647
CviAII	CATG	1 cut(s)	327
CviQI	GTAC	2 cut(s)	7, 647
DdeI	CTNAG	4 cut(s)	333, 478, 753, 858
DpnI	GATC	3 cut(s)	441, 525, 542
DpnII	GATC	3 cut(s)	439, 523, 540
DriI	GACNNNNNGTC	1 cut(s)	575
Eam1104I	CTCTTC	2 cut(s)	131, 159
Eam1105I	GACNNNNNGTC	1 cut(s)	575
EarI	CTCTTC	2 cut(s)	131, 159
Eco130I	CCWWGG	1 cut(s)	809
Eco47I	GGWCC	2 cut(s)	569, 703
Eco57I	CTGAAG	3 cut(s)	73, 390, 718
Eco88I	CYCGRG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	809
FaeI	CATG	1 cut(s)	330
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	1 cut(s)	326
Fnu4HI	GCNGC	6 cut(s)	102, 378, 381, 504, 624, 888
FokI	GGATG	2 cut(s)	428, 434
Fsp4HI	GCNGC	6 cut(s)	102, 378, 381, 504, 624, 888
FspBI	CTAG	3 cut(s)	254, 560, 650
GlaI	GCGC	2 cut(s)	513, 694
GluI	GCNGC	6 cut(s)	102, 378, 381, 504, 624, 888
GsuI	CTGGAG	1 cut(s)	719
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	758
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	2 cut(s)	514, 695
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	2 cut(s)	512, 693
HinP1I	GCGC	2 cut(s)	512, 693
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	4 cut(s)	61, 130, 529, 787
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	2 cut(s)	298, 310
Hpy166II	GTNNAC	4 cut(s)	97, 647, 661, 667
Hpy188I	TCNGA	7 cut(s)	92, 135, 336, 409, 496, 528, 741
Hpy188III	TCNNGA	6 cut(s)	32, 254, 263, 443, 555, 698
Hpy8I	GTNNAC	4 cut(s)	97, 647, 661, 667
HpyAV	CCTTC	3 cut(s)	385, 406, 818
HpyCH4III	ACNGT	2 cut(s)	22, 260
HpyCH4IV	ACGT	2 cut(s)	48, 663
HpyCH4V	TGCA	3 cut(s)	380, 453, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	4 cut(s)	333, 478, 753, 858
HpySE526I	ACGT	2 cut(s)	48, 663
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	2 cut(s)	512, 693
Kzo9I	GATC	3 cut(s)	439, 523, 540
LmnI	GCTCC	3 cut(s)	305, 620, 884
Lsp1109I	GCAGC	6 cut(s)	113, 364, 392, 490, 610, 874
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	3 cut(s)	254, 560, 650
MaeII	ACGT	2 cut(s)	48, 663
MalI	GATC	3 cut(s)	441, 525, 542
MboI	GATC	3 cut(s)	439, 523, 540
MboII	GAAGA	8 cut(s)	124, 148, 173, 176, 357, 360, 364, 396
MluCI	AATT	5 cut(s)	141, 289, 446, 458, 550
MlyI	GAGTC	2 cut(s)	523, 796
MnlI	CCTC	9 cut(s)	77, 289, 296, 388, 694, 748, 826, 846, 874
MseI	TTAA	4 cut(s)	534, 615, 768, 794
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	210
MvnI	CGCG	2 cut(s)	595, 693
MwoI	GCNNNNNNNGC	1 cut(s)	509
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	3 cut(s)	439, 523, 540
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	330
PaeR7I	CTCGAG	1 cut(s)	81
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	61, 130
PkrI	GCNGC	6 cut(s)	103, 379, 382, 505, 625, 889
PleI	GAGTC	2 cut(s)	523, 795
PpsI	GAGTC	2 cut(s)	523, 795
PspN4I	GGNNCC	1 cut(s)	571
PspPI	GGNCC	2 cut(s)	569, 703
PspXI	VCTCGAGB	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	8, 648
RsaNI	GTAC	2 cut(s)	7, 647
SaqAI	TTAA	4 cut(s)	534, 615, 768, 794
SatI	GCNGC	6 cut(s)	102, 378, 381, 504, 624, 888
Sau3AI	GATC	3 cut(s)	439, 523, 540
Sau96I	GGNCC	2 cut(s)	569, 703
SchI	GAGTC	2 cut(s)	523, 796
ScrFI	CCNGG	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	25
SfcI	CTRYAG	1 cut(s)	378
Sfr274I	CTCGAG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	569, 703
SlaI	CTCGAG	1 cut(s)	81
SmlI	CTYRAG	3 cut(s)	81, 533, 784
SmoI	CTYRAG	3 cut(s)	81, 533, 784
SpeI	ACTAGT	1 cut(s)	559
Sse9I	AATT	5 cut(s)	141, 289, 446, 458, 550
SsiI	CCGC	2 cut(s)	593, 806
SspMI	CTAG	3 cut(s)	254, 560, 650
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	2 cut(s)	22, 260
TaiI	ACGT	2 cut(s)	51, 666
TaqI	TCGA	1 cut(s)	82
TasI	AATT	5 cut(s)	141, 289, 446, 458, 550
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	61, 130
Tru1I	TTAA	4 cut(s)	534, 615, 768, 794
Tru9I	TTAA	4 cut(s)	534, 615, 768, 794
TseI	GCWGC	6 cut(s)	101, 377, 380, 503, 623, 887
TspDTI	ATGAA	6 cut(s)	17, 291, 360, 438, 651, 674
TspGWI	ACGGA	2 cut(s)	353, 633
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	569, 703
XapI	RAATTY	3 cut(s)	289, 446, 550
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XhoI	CTCGAG	1 cut(s)	81
XspI	CTAG	3 cut(s)	254, 560, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.