Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001892

Physical Location & Seq

Genomic Coordinates Reverse (-)

3795624 .. 3799671

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCTGCCCGCCAGAGGCATGGGGAAGCGCGGTTGGGTGGGATTTGTTGTGACAAAACGAGGCTCAAAGTTTTCGATCTGGATCCGTTCGACTACCAGAGCATGCTCGACGCTCTCAAGGGCTGTTCCGGCTTGTTTTATTCATTTGAGCCTCCACAAGATCAGCCTGACTGCGATGTATGAATACATAGCGGAAGTAGAGGTTCGGGCAGCGCACAACGTGCTAGAAGCATGTGCAAGAACTGAAACAATAGACAAAATCGTGTTTACATCTTCCGCTGCTGCCGTCTTTTGGCGAAATGATCGCAAATCGACGGCTCTCGATTTGGATTTGGATGAACGGCACTGGAGCGATGTTAATTTCTGTCGTAGTTTCAAGTTGTGGCATGCATTATCAAAAACCCTAGCAGAGAAGACAGCGTGGGCCCTTGCAATGGACAGGAGCTTGAATATGGTGTCTATGAATGTAGGGTTGCTGATGGCTCCGGATTTGTCCATCACCAACCCGTATTTGAAAGGAGCGGCTGAGATGTACGAAGATGGCGTGCTCGTGACCGTCGATACTAATTTCTTAATCGATGCACACATCTGCGTTTTTGAAGATGTCTCGTCCTACGGTCGATATCTGTGCTTCAACAACATCATCAATCGGGCTGAAGATGCTCTAGAGCTTGCTCGGAAGTTGACTCCTTCTGCCCCTTCAAATCCACAAGGCCAGGACCAAGATATGAGTATCCCTCAACAGAGGATAAGCAACAAGAAATTAAATAAATTGATGGTGGAATTTAAGAGCAAATCTCAAGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

270

Amino Acids

30.27

Weight (kDa)

8.64

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23910 AT2G23910 AT2G23910 AT2G23910 AT4G30470
fragaria_vesca	FvH4_5g22420 FvH4_5g22420 FvH4_5g22420
malus_domestica	MD00G1072500.v1.1 MD01G1237600.v1.1 MD06G1036600.v1.1 MD07G1310200.v1.1
prunus_persica	Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.5G032800_v2.0.a1
pyrus_communis	pycom01g24530 pycom06g03000 pycom13g28670
rosa_chinensis	RchiOBHm_Chr4g0405161 RchiOBHm_Chr7g0210161
rosa_laevigata	RLG00000003059 RLG00000008867
rosa_multiflora	Rmu_sc0005438.1_g000001 Rmu_sc0006908.1_g000015 Rmu_ssc0000255.1_g000034
rosa_roxburghii	Rroxscaffold_3G00248570 Rroxscaffold_5G00349400
rosa_rugosa	Rorug04G0054400 Rorug04G0054500 Rorug04G0054600 Rorug07G0119000
rosa_samantha	Rh1AG349400 Rh4AG129400 Rh4BG123100 Rh4CG136700 Rh4DG122900 Rh7AG252500 Rh7BG247600 Rh7CG269500 Rh7DG260100
rosa_wichuraiana	Rw0G002460 Rw1G031120 Rw4G010450 Rw7G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	521
AccII	CGCG	1 cut(s)	30
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	5 cut(s)	9, 30, 191, 276, 521
AclWI	GGATC	2 cut(s)	76, 89
AcsI	RAATTY	1 cut(s)	782
AcuI	CTGAAG	1 cut(s)	675
AdeI	CACNNNGTG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	3 cut(s)	14, 291, 433
AgsI	TTSAA	6 cut(s)	376, 448, 514, 599, 634, 702
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	2 cut(s)	444, 670
AluI	AGCT	2 cut(s)	444, 670
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	2 cut(s)	76, 89
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	2 cut(s)	423, 712
ApaI	GGGCCC	1 cut(s)	427
ApeKI	GCWGC	4 cut(s)	4, 209, 278, 281
ApoI	RAATTY	1 cut(s)	782
AspLEI	GCGC	2 cut(s)	30, 214
AspS9I	GGNCC	3 cut(s)	423, 424, 718
AsuHPI	GGTGA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	718
BaeGI	GKGCMC	1 cut(s)	427
BamHI	GGATCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	427
BauI	CACGAG	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	221, 265, 268
BccI	CCATC	4 cut(s)	472, 503, 533, 769
BceAI	ACGGC	3 cut(s)	269, 330, 356
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	1 cut(s)	716
BciVI	GTATCC	1 cut(s)	743
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	3 cut(s)	224, 404, 665
BfuI	GTATCC	1 cut(s)	743
BisI	GCNGC	5 cut(s)	5, 210, 279, 282, 522
BlsI	GCNGC	5 cut(s)	6, 211, 280, 283, 523
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	1 cut(s)	718
BmgT120I	GGNCC	3 cut(s)	423, 424, 718
BmiI	GGNNCC	3 cut(s)	83, 425, 483
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	2 cut(s)	568, 649
BpiI	GAAGAC	1 cut(s)	419
BplI	GAGNNNNNCTC	3 cut(s)	721, 753, 781
BpmI	CTGGAG	1 cut(s)	367
BpuEI	CTTGAG	2 cut(s)	100, 783
Bsa29I	ATCGAT	1 cut(s)	576
BsaBI	GATNNNNATC	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 291, 433
Bse1I	ACTGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	80
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	716
BseCI	ATCGAT	1 cut(s)	576
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	3 cut(s)	14, 291, 433
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	3 cut(s)	221, 265, 268
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	619
BshFI	GGCC	2 cut(s)	425, 714
BshVI	ATCGAT	1 cut(s)	576
BsiEI	CGRYCG	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	2 cut(s)	128, 485
BslI	CCNNNNNNNGG	3 cut(s)	14, 291, 433
BsmAI	GTCTC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	425, 714
Bsp120I	GGGCCC	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	427, 549
Bsp13I	TCCGGA	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	75, 81, 159, 301
BspACI	CCGC	5 cut(s)	9, 30, 191, 276, 521
BspANI	GGCC	2 cut(s)	425, 714
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	576
BspEI	TCCGGA	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	83, 425, 483
BspPI	GGATC	2 cut(s)	76, 89
BsrBI	CCGCTC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	350
BssMI	GATC	4 cut(s)	75, 81, 159, 301
BssSI	CACGAG	1 cut(s)	548
Bst2BI	CACGAG	1 cut(s)	548
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	2 cut(s)	556, 617
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	5 cut(s)	9, 103, 387, 545, 672
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	30, 214
BstKTI	GATC	4 cut(s)	78, 84, 162, 304
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	4 cut(s)	75, 81, 159, 301
BstMCI	CGRYCG	1 cut(s)	619
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 220, 659
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	3 cut(s)	105, 234, 389
BstSCI	CCNGG	1 cut(s)	714
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	221, 265, 268
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	81
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	743
BsuRI	GGCC	2 cut(s)	425, 714
BsuTUI	ATCGAT	1 cut(s)	576
BtgZI	GCGATG	2 cut(s)	188, 366
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	5 cut(s)	9, 103, 387, 545, 672
CfoI	GCGC	2 cut(s)	30, 214
Cfr13I	GGNCC	3 cut(s)	423, 424, 718
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	4 cut(s)	19, 102, 231, 386
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	4 cut(s)	77, 83, 161, 303
DpnII	GATC	4 cut(s)	75, 81, 159, 301
DraIII	CACNNNGTG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	427
Eco32I	GATATC	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	714
EcoRV	GATATC	1 cut(s)	623
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	427
FaeI	CATG	4 cut(s)	22, 105, 234, 389
FaiI	YATR	9 cut(s)	20, 103, 180, 188, 232, 387, 452, 461, 728
FatI	CATG	4 cut(s)	18, 101, 230, 385
FauI	CCCGC	1 cut(s)	16
Fnu4HI	GCNGC	5 cut(s)	5, 210, 279, 282, 522
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	5 cut(s)	5, 210, 279, 282, 522
FspBI	CTAG	3 cut(s)	224, 404, 665
GlaI	GCGC	2 cut(s)	29, 213
GluI	GCNGC	5 cut(s)	5, 210, 279, 282, 522
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	425, 714
HapII	CCGG	2 cut(s)	128, 485
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	2 cut(s)	30, 214
Hin1II	CATG	4 cut(s)	22, 105, 234, 389
Hin6I	GCGC	2 cut(s)	28, 212
HinP1I	GCGC	2 cut(s)	28, 212
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	1 cut(s)	685
HpaII	CCGG	2 cut(s)	128, 485
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	2 cut(s)	267, 684
Hpy188I	TCNGA	1 cut(s)	678
Hpy188III	TCNNGA	6 cut(s)	79, 320, 485, 550, 665, 800
Hpy8I	GTNNAC	2 cut(s)	267, 684
Hpy99I	CGWCG	3 cut(s)	112, 316, 560
HpyAV	CCTTC	2 cut(s)	699, 708
HpyCH4III	ACNGT	2 cut(s)	556, 617
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	4 cut(s)	236, 389, 431, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 220, 659
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	22, 105, 234, 389
HspAI	GCGC	2 cut(s)	28, 212
Kpn2I	TCCGGA	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	75, 81, 159, 301
LmnI	GCTCC	4 cut(s)	348, 441, 487, 518
Lsp1109I	GCAGC	3 cut(s)	221, 265, 268
LweI	GCATC	2 cut(s)	568, 649
MaeI	CTAG	3 cut(s)	224, 404, 665
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	49, 550
MalI	GATC	4 cut(s)	77, 83, 161, 303
MbiI	CCGCTC	1 cut(s)	521
MboI	GATC	4 cut(s)	75, 81, 159, 301
MboII	GAAGA	5 cut(s)	264, 424, 548, 611, 668
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	427, 549
MluCI	AATT	5 cut(s)	358, 565, 761, 770, 782
MlyI	GAGTC	1 cut(s)	679
MnlI	CCTC	6 cut(s)	8, 53, 161, 193, 738, 747
Mph1103I	ATGCAT	1 cut(s)	391
MroI	TCCGGA	1 cut(s)	484
MseI	TTAA	4 cut(s)	357, 572, 764, 786
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	128, 485
MspR9I	CCNGG	1 cut(s)	716
MvaI	CCWGG	1 cut(s)	716
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	128, 220, 659
NdeII	GATC	4 cut(s)	75, 81, 159, 301
NlaIII	CATG	4 cut(s)	22, 105, 234, 389
NlaIV	GGNNCC	3 cut(s)	83, 425, 483
NmuCI	GTSAC	2 cut(s)	49, 550
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	3 cut(s)	105, 234, 389
PaeI	GCATGC	2 cut(s)	105, 389
PcsI	WCGNNNNNNNCGW	2 cut(s)	540, 555
PkrI	GCNGC	5 cut(s)	6, 211, 280, 283, 523
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	3 cut(s)	83, 425, 483
PspOMI	GGGCCC	1 cut(s)	423
PspPI	GGNCC	3 cut(s)	423, 424, 718
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SaqAI	TTAA	4 cut(s)	357, 572, 764, 786
SatI	GCNGC	5 cut(s)	5, 210, 279, 282, 522
Sau3AI	GATC	4 cut(s)	75, 81, 159, 301
Sau96I	GGNCC	3 cut(s)	423, 424, 718
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	2 cut(s)	427, 549
SetI	ASST	4 cut(s)	204, 222, 446, 672
SfaNI	GCATC	2 cut(s)	568, 649
SinI	GGWCC	1 cut(s)	718
SmlI	CTYRAG	2 cut(s)	115, 798
SmoI	CTYRAG	2 cut(s)	115, 798
SphI	GCATGC	2 cut(s)	105, 389
Sse9I	AATT	5 cut(s)	358, 565, 761, 770, 782
SsiI	CCGC	5 cut(s)	9, 30, 191, 276, 521
SspMI	CTAG	3 cut(s)	224, 404, 665
StyD4I	CCNGG	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	556, 617
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	8 cut(s)	74, 89, 107, 311, 321, 558, 576, 619
TasI	AATT	5 cut(s)	358, 565, 761, 770, 782
TauI	GCSGC	1 cut(s)	524
Tru1I	TTAA	4 cut(s)	357, 572, 764, 786
Tru9I	TTAA	4 cut(s)	357, 572, 764, 786
TscAI	CASTG	1 cut(s)	350
TseFI	GTSAC	2 cut(s)	49, 550
TseI	GCWGC	4 cut(s)	4, 209, 278, 281
Tsp45I	GTSAC	2 cut(s)	49, 550
TspDTI	ATGAA	4 cut(s)	131, 195, 351, 476
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	1 cut(s)	782
XbaI	TCTAGA	1 cut(s)	664
XceI	RCATGY	3 cut(s)	105, 234, 389
XspI	CTAG	3 cut(s)	224, 404, 665
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.