Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001892

Physical Location & Seq

Genomic Coordinates Reverse (-)

58630253 .. 58632345

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG349400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTCCCGCAGCTTCGAATCCTTTCGACGATCACCACGGCACCACGAGCTCGACCACAGTCTGCGTAATGGATGCGTCAGGCCACCTCGGCTCGACCCTCGTCCAGCGCCTGGTTCAGACGGGATACACAGTCCACGCCGCGCTTCAGAGCCATGGGGAATCCAAGTTGGGTTCGGTTTCTTGTGAGAATAACAAGAGGCTGAAGATTTTCCATTTAGACCCATTTGATTACCAGAGCATAGTTGATGCTTTGAAGGGCTGTTCTGGCTTGTTCTACACTTTTGAACCTCCACAAGATCAGCCCGACTATGATGAATATATGGCAGAAGTAGAGTCACCGCCGTCGTTTGGAGCAGTAACAATAAATCGACGGTCGCTGCTATGCCGGAGTTGGACTGACGTCAACTTGTGTCGCAAGTTCAAGCTATGGCATGCCCTATCAAAAACCCTAGCAGAGAAGACAGCGTGGGCGTTGGCAATGGATAGGAGCTTGAATATGGTGTCTATGAATGCAGGGTTGATGATAAATCCCGACTTGTCCATCAGCAACCCGTACTTGAAGGGAGCGGCGGAGATGTATGAAGACGGGCTGCTCGTGACCGTCGATATAAATTTCTTAGTGGATGCCCATATTTGCGTCTTCGAAGACATCACAGCCTACGGTCGATACTTATGTTTCAACAAAATCATCACTCAGTCGGGAGACGCTGTTGACCTTGCCCGGAAGTTGACCCCTTCTGCCCCGGCCTCCTTGCCCCAAAGCAAGGACCAGGATATGAGAATCATCCAAGAGAGAATAAGGGCGAGTTTGGCCCCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

274

Amino Acids

30.3

Weight (kDa)

5.73

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23910 AT2G23910 AT2G23910 AT2G23910 AT4G30470
fragaria_vesca	FvH4_5g22420 FvH4_5g22420 FvH4_5g22420
malus_domestica	MD00G1072500.v1.1 MD01G1237600.v1.1 MD06G1036600.v1.1 MD07G1310200.v1.1
prunus_persica	Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.5G032800_v2.0.a1
pyrus_communis	pycom01g24530 pycom06g03000 pycom13g28670
rosa_chinensis	RchiOBHm_Chr4g0405161 RchiOBHm_Chr7g0210161
rosa_laevigata	RLG00000003059 RLG00000008867
rosa_multiflora	Rmu_sc0005438.1_g000001 Rmu_sc0006908.1_g000015 Rmu_ssc0000255.1_g000034
rosa_roxburghii	Rroxscaffold_3G00248570 Rroxscaffold_5G00349400
rosa_rugosa	Rorug04G0054400 Rorug04G0054500 Rorug04G0054600 Rorug07G0119000
rosa_samantha	Rh1AG349400 Rh4AG129400 Rh4BG123100 Rh4CG136700 Rh4DG122900 Rh7AG252500 Rh7BG247600 Rh7CG269500 Rh7DG260100
rosa_wichuraiana	Rw0G002460 Rw1G031120 Rw4G010450 Rw7G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	405
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	569
AccII	CGCG	1 cut(s)	143
AciI	CCGC	5 cut(s)	9, 141, 341, 569, 572
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	2 cut(s)	131, 224
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	3 cut(s)	112, 350, 766
AgsI	TTSAA	6 cut(s)	256, 287, 424, 496, 562, 682
AjnI	CCWGG	2 cut(s)	111, 771
AluBI	AGCT	4 cut(s)	14, 51, 427, 492
AluI	AGCT	4 cut(s)	14, 51, 427, 492
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	699
AlwNI	CAGNNNCTG	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	817
AoxI	GGCC	3 cut(s)	82, 747, 813
ApeKI	GCWGC	3 cut(s)	11, 379, 592
ApoI	RAATTY	1 cut(s)	613
Asp700I	GAANNNNTTC	2 cut(s)	23, 209
AspLEI	GCGC	2 cut(s)	111, 145
AspS9I	GGNCC	2 cut(s)	769, 814
AsuC2I	CCSGG	2 cut(s)	724, 746
AsuHPI	GGTGA	2 cut(s)	26, 330
AsuII	TTCGAA	2 cut(s)	17, 645
AvaI	CYCGRG	1 cut(s)	817
AvaII	GGWCC	1 cut(s)	769
BaeI	ACNNNNGTAYC	2 cut(s)	661, 694
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	53
BauI	CACGAG	2 cut(s)	46, 596
BbsI	GAAGAC	4 cut(s)	467, 591, 634, 654
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	23, 366, 579
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	2 cut(s)	55, 328
BciT130I	CCWGG	2 cut(s)	113, 773
BciVI	GTATCC	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	724, 746
BcoDI	GTCTC	1 cut(s)	699
BfaI	CTAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	5 cut(s)	12, 141, 380, 570, 593
BlsI	GCNGC	5 cut(s)	13, 142, 381, 571, 594
Bme1390I	CCNGG	4 cut(s)	113, 724, 746, 773
Bme18I	GGWCC	1 cut(s)	769
BmeT110I	CYCGRG	1 cut(s)	817
BmgT120I	GGNCC	2 cut(s)	769, 814
BmiI	GGNNCC	3 cut(s)	6, 43, 816
BmrFI	CCNGG	4 cut(s)	113, 724, 746, 773
BmsI	GCATC	3 cut(s)	64, 238, 616
BoxI	GACNNNNGTC	3 cut(s)	59, 101, 401
BpiI	GAAGAC	4 cut(s)	467, 591, 634, 654
Bpu14I	TTCGAA	2 cut(s)	17, 645
BpuMI	CCSGG	2 cut(s)	724, 746
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	5 cut(s)	37, 88, 154, 744, 818
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 350, 766
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	2 cut(s)	113, 773
BseDI	CCNNGG	5 cut(s)	37, 88, 154, 744, 818
BseGI	GGATG	3 cut(s)	79, 631, 786
BseLI	CCNNNNNNNGG	3 cut(s)	112, 350, 766
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	710
BseXI	GCAGC	3 cut(s)	23, 366, 579
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	2 cut(s)	377, 667
BshFI	GGCC	3 cut(s)	84, 749, 815
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	2 cut(s)	377, 667
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	817
BsiSI	CCGG	3 cut(s)	388, 724, 746
BslI	CCNNNNNNNGG	3 cut(s)	112, 350, 766
BsmAI	GTCTC	1 cut(s)	699
BsmBI	CGTCTC	1 cut(s)	699
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	3 cut(s)	84, 749, 815
BsoBI	CYCGRG	1 cut(s)	817
Bsp119I	TTCGAA	2 cut(s)	17, 645
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	31, 298
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	5 cut(s)	9, 141, 341, 569, 572
BspANI	GGCC	3 cut(s)	84, 749, 815
BspCNI	CTCAG	1 cut(s)	709
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	3 cut(s)	6, 43, 816
BspT104I	TTCGAA	2 cut(s)	17, 645
BspT107I	GGYRCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	486
BssECI	CCNNGG	5 cut(s)	37, 88, 154, 744, 818
BssMI	GATC	2 cut(s)	31, 298
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	2 cut(s)	46, 596
BssT1I	CCWWGG	1 cut(s)	154
Bst2BI	CACGAG	2 cut(s)	46, 596
Bst2UI	CCWGG	2 cut(s)	113, 773
Bst4CI	ACNGT	5 cut(s)	61, 133, 375, 604, 665
BstACI	GRCGYC	1 cut(s)	402
BstBI	TTCGAA	2 cut(s)	17, 645
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	619, 696
BstDSI	CCRYGG	2 cut(s)	37, 154
BstF5I	GGATG	3 cut(s)	79, 631, 786
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	2 cut(s)	111, 145
BstKTI	GATC	2 cut(s)	34, 301
BstMAI	GTCTC	1 cut(s)	699
BstMBI	GATC	2 cut(s)	31, 298
BstMCI	CGRYCG	2 cut(s)	377, 667
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 48, 90, 267, 812
BstNI	CCWGG	2 cut(s)	113, 773
BstNSI	RCATGY	1 cut(s)	437
BstPAI	GACNNNNGTC	3 cut(s)	59, 101, 401
BstSCI	CCNGG	4 cut(s)	111, 722, 744, 771
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	23, 366, 579
BstV2I	GAAGAC	4 cut(s)	467, 591, 634, 654
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	84, 749, 815
BtgI	CCRYGG	2 cut(s)	37, 154
BtsCI	GGATG	3 cut(s)	79, 631, 786
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	112
CfoI	GCGC	2 cut(s)	111, 145
Cfr13I	GGNCC	2 cut(s)	769, 814
CseI	GACGC	3 cut(s)	66, 628, 716
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	2 cut(s)	155, 434
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	2 cut(s)	619, 696
DpnI	GATC	2 cut(s)	33, 300
DpnII	GATC	2 cut(s)	31, 298
EciI	GGCGGA	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	769
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	131, 224
Eco88I	CYCGRG	1 cut(s)	817
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	111, 771
EcoT14I	CCWWGG	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	699
FaeI	CATG	2 cut(s)	158, 437
FatI	CATG	2 cut(s)	154, 433
FauI	CCCGC	1 cut(s)	16
Fnu4HI	GCNGC	5 cut(s)	12, 141, 380, 570, 593
FokI	GGATG	3 cut(s)	86, 638, 773
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	5 cut(s)	12, 141, 380, 570, 593
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	2 cut(s)	110, 144
GluI	GCNGC	5 cut(s)	12, 141, 380, 570, 593
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	84, 749, 815
HapII	CCGG	3 cut(s)	388, 724, 746
HgaI	GACGC	3 cut(s)	66, 628, 716
HhaI	GCGC	2 cut(s)	111, 145
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	158, 437
Hin6I	GCGC	2 cut(s)	109, 143
HinP1I	GCGC	2 cut(s)	109, 143
HincII	GTYRAC	3 cut(s)	406, 715, 732
HindII	GTYRAC	3 cut(s)	406, 715, 732
HinfI	GANTC	4 cut(s)	19, 161, 335, 783
HpaII	CCGG	3 cut(s)	388, 724, 746
HphI	GGTGA	2 cut(s)	26, 330
Hpy166II	GTNNAC	4 cut(s)	136, 406, 715, 732
Hpy188I	TCNGA	2 cut(s)	120, 150
Hpy188III	TCNNGA	3 cut(s)	533, 598, 702
Hpy8I	GTNNAC	4 cut(s)	136, 406, 715, 732
Hpy99I	CGWCG	4 cut(s)	32, 349, 375, 608
HpyAV	CCTTC	3 cut(s)	250, 556, 747
HpyCH4III	ACNGT	5 cut(s)	61, 133, 375, 604, 665
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 48, 90, 267, 812
HpyF3I	CTNAG	2 cut(s)	619, 696
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	158, 437
HspAI	GCGC	2 cut(s)	109, 143
Kzo9I	GATC	2 cut(s)	31, 298
LmnI	GCTCC	4 cut(s)	10, 353, 489, 566
Lsp1109I	GCAGC	3 cut(s)	23, 366, 579
LweI	GCATC	3 cut(s)	64, 238, 616
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	336, 358, 598
MalI	GATC	2 cut(s)	33, 300
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	2 cut(s)	31, 298
MboII	GAAGA	5 cut(s)	217, 472, 596, 634, 659
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	613
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	6 cut(s)	98, 110, 192, 300, 760, 813
MroXI	GAANNNNTTC	2 cut(s)	23, 209
MspI	CCGG	3 cut(s)	388, 724, 746
MspR9I	CCNGG	4 cut(s)	113, 724, 746, 773
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	2 cut(s)	113, 773
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	5 cut(s)	11, 48, 90, 267, 812
NciI	CCSGG	2 cut(s)	724, 746
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	31, 298
NlaIII	CATG	2 cut(s)	158, 437
NlaIV	GGNNCC	3 cut(s)	6, 43, 816
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	336, 598
NspI	RCATGY	1 cut(s)	437
NspV	TTCGAA	2 cut(s)	17, 645
PaeI	GCATGC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	2 cut(s)	594, 603
PctI	GAATGC	1 cut(s)	517
PdmI	GAANNNNTTC	2 cut(s)	23, 209
PfeI	GAWTC	3 cut(s)	19, 161, 783
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	13, 142, 381, 571, 594
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PshAI	GACNNNNGTC	3 cut(s)	59, 101, 401
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	111, 771
PspGI	CCWGG	2 cut(s)	111, 771
PspN4I	GGNNCC	3 cut(s)	6, 43, 816
PspPI	GGNCC	2 cut(s)	769, 814
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	5 cut(s)	12, 141, 380, 570, 593
Sau3AI	GATC	2 cut(s)	31, 298
Sau96I	GGNCC	2 cut(s)	769, 814
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	4 cut(s)	113, 724, 746, 773
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	9 cut(s)	16, 53, 90, 292, 405, 429, 494, 720, 824
SfaNI	GCATC	3 cut(s)	64, 238, 616
SfuI	TTCGAA	2 cut(s)	17, 645
SinI	GGWCC	1 cut(s)	769
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	1 cut(s)	613
SsiI	CCGC	5 cut(s)	9, 141, 341, 569, 572
SspMI	CTAG	1 cut(s)	452
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	4 cut(s)	111, 722, 744, 771
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	5 cut(s)	61, 133, 375, 604, 665
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	8 cut(s)	17, 27, 53, 95, 370, 606, 645, 667
TasI	AATT	1 cut(s)	613
TauI	GCSGC	2 cut(s)	143, 572
TfiI	GAWTC	3 cut(s)	19, 161, 783
TseFI	GTSAC	2 cut(s)	336, 598
TseI	GCWGC	3 cut(s)	11, 379, 592
Tsp45I	GTSAC	2 cut(s)	336, 598
TspDTI	ATGAA	3 cut(s)	330, 524, 597
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	769
XapI	RAATTY	1 cut(s)	613
XceI	RCATGY	1 cut(s)	437
XmnI	GAANNNNTTC	2 cut(s)	23, 209
XspI	CTAG	1 cut(s)	452
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.