Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001892

Physical Location & Seq

Genomic Coordinates Forward (+)

7945003 .. 7947109

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G099500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTAGGGAAGCCACAACTTGAAACGAAAACAAAAACCGAAAGAGCGCGAATGGACAACAAAAAACCCATCGTTTGTGTTCTTGATGCTTCAACCTACGTGGGCTTCTGGATTCTGAAAGGATTGCTTGGTAGAGGTTTCACAGTCCACGCAGCCATCCAGAATAATGGGGAAACAGAAATTCAGAAGAGAATTAGGGAGATGGAGAAAGTAGAAGAGAGATTGGAAGTGTTTGTTGTGGATGTTTTGGACTACCATAGCATTCTTTTGGCTTTGAAGGGTTGCTCTGCTATGTTCTGCTGTTTAGATAGTTCAGATGGATATGATGAAAAAATGGTGGATTTGGAGGTGAGAGGAGCAATTAATGTTGTGGAAGCATGTGCTCAGACAGAGACTCTGGAGAAGATTGTGTTCACTTCTTCTTTGACTGCAGCAATTTGGAGAGAGGACATTTGTTCTGAGAAGGATGTGGATGAGAAATCATGGAGTGATCAGGATTTTTGCAGGAAATTGAAGTTGTGGTACGCCCTGGCAAAGACACTCTCAGAACAGGCTGCTTGGGCTTTATCCATGGACCGGATGCTCAAGATGGTTTCCATAAACTCTGGACTTGTCCTTGGGCCCAGTGTCGCCCAACAGAACCCTCGGACAACTATGTCTTATCTTAACGGAGCGGCTCAAATGTACGAAAACGGGGTGCTTGCATTCGTCGACGTGAACTTTCTAGCCGATATTCATATTCGAGCGCTGGAGGATCAGTCCACATGCGGGAGGTACTTCTGCTTTAATAGAATTGTGAATACTGAGGATGAAGCTGTTAAGCTTGCCGAGAGCTTAAGCCCTTTGATATCATTGCCACCAAGGTATGAATACCATGGGAGTGAGGTGCATACCGAGCGATTGAGGGCCAAAAAGTTGAGCAAGTTGGCTGAGGGCGCTGCCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

316

Amino Acids

35.45

Weight (kDa)

5.45

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23910 AT2G23910 AT2G23910 AT2G23910 AT4G30470
fragaria_vesca	FvH4_5g22420 FvH4_5g22420 FvH4_5g22420
malus_domestica	MD00G1072500.v1.1 MD01G1237600.v1.1 MD06G1036600.v1.1 MD07G1310200.v1.1
prunus_persica	Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.1G099500_v2.0.a1 Prupe.5G032800_v2.0.a1
pyrus_communis	pycom01g24530 pycom06g03000 pycom13g28670
rosa_chinensis	RchiOBHm_Chr4g0405161 RchiOBHm_Chr7g0210161
rosa_laevigata	RLG00000003059 RLG00000008867
rosa_multiflora	Rmu_sc0005438.1_g000001 Rmu_sc0006908.1_g000015 Rmu_ssc0000255.1_g000034
rosa_roxburghii	Rroxscaffold_3G00248570 Rroxscaffold_5G00349400
rosa_rugosa	Rorug04G0054400 Rorug04G0054500 Rorug04G0054600 Rorug07G0119000
rosa_samantha	Rh1AG349400 Rh4AG129400 Rh4BG123100 Rh4CG136700 Rh4DG122900 Rh7AG252500 Rh7BG247600 Rh7CG269500 Rh7DG260100
rosa_wichuraiana	Rw0G002460 Rw1G031120 Rw4G010450 Rw7G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	655
AccBSI	CCGCTC	1 cut(s)	674
AccI	GTMKAC	1 cut(s)	711
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	674, 768
AclWI	GGATC	1 cut(s)	762
AcsI	RAATTY	1 cut(s)	180
AfaI	GTAC	3 cut(s)	524, 686, 776
AfeI	AGCGCT	1 cut(s)	747
AfiI	CCNNNNNNNGG	2 cut(s)	576, 768
AflII	CTTAAG	1 cut(s)	835
AgsI	TTSAA	4 cut(s)	23, 93, 277, 514
AjiI	CACGTC	1 cut(s)	715
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	3 cut(s)	815, 823, 834
AluI	AGCT	3 cut(s)	815, 823, 834
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	762
Aor51HI	AGCGCT	1 cut(s)	747
AoxI	GGCC	2 cut(s)	620, 906
ApaI	GGGCCC	1 cut(s)	624
ApeKI	GCWGC	4 cut(s)	152, 431, 554, 938
ApoI	RAATTY	1 cut(s)	180
AseI	ATTAAT	1 cut(s)	363
AspLEI	GCGC	3 cut(s)	49, 748, 938
AspS9I	GGNCC	4 cut(s)	574, 620, 621, 906
AsuHPI	GGTGA	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	624
BarI	GAAGNNNNNNTAC	2 cut(s)	506, 538
Bbv12I	GWGCWC	1 cut(s)	385
BbvCI	CCTCAGC	1 cut(s)	930
BbvI	GCAGC	4 cut(s)	164, 443, 541, 925
BccI	CCATC	5 cut(s)	77, 164, 196, 311, 583
BciT130I	CCWGG	1 cut(s)	530
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	2 cut(s)	749, 939
BfrI	CTTAAG	1 cut(s)	835
BisI	GCNGC	5 cut(s)	153, 432, 555, 675, 939
BlsI	GCNGC	5 cut(s)	154, 433, 556, 676, 940
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	1 cut(s)	574
BmgBI	CACGTC	1 cut(s)	715
BmgT120I	GGNCC	4 cut(s)	574, 620, 621, 906
BmiI	GGNNCC	1 cut(s)	622
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	2 cut(s)	76, 570
BmuI	ACTGGG	1 cut(s)	618
BpmI	CTGGAG	2 cut(s)	419, 770
Bpu10I	CCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	100
BsaJI	CCNNGG	6 cut(s)	528, 570, 616, 644, 860, 874
BsaWI	WCCGGW	1 cut(s)	576
BsaXI	ACNNNNNCTCC	2 cut(s)	743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	576, 768
Bse1I	ACTGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	851
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	6 cut(s)	528, 570, 616, 644, 860, 874
BseGI	GGATG	6 cut(s)	156, 247, 472, 478, 585, 814
BseLI	CCNNNNNNNGG	2 cut(s)	576, 768
BseMI	GCAATG	1 cut(s)	851
BseMII	CTCAG	5 cut(s)	398, 450, 558, 795, 921
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	4 cut(s)	164, 443, 541, 925
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	622, 908
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	577
BslI	CCNNNNNNNGG	2 cut(s)	576, 768
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	2 cut(s)	261, 704
BsnI	GGCC	2 cut(s)	622, 908
Bsp120I	GGGCCC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	385, 624
Bsp143I	GATC	2 cut(s)	490, 754
Bsp19I	CCATGG	2 cut(s)	570, 874
BspACI	CCGC	2 cut(s)	674, 768
BspANI	GGCC	2 cut(s)	622, 908
BspCNI	CTCAG	5 cut(s)	397, 451, 557, 796, 922
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	622
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	762
BspTI	CTTAAG	1 cut(s)	835
BsrBI	CCGCTC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	851
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	6 cut(s)	528, 570, 616, 644, 860, 874
BssMI	GATC	2 cut(s)	490, 754
BssT1I	CCWWGG	4 cut(s)	570, 616, 860, 874
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	182, 210
BstAFI	CTTAAG	1 cut(s)	835
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	2 cut(s)	702, 825
BstDEI	CTNAG	5 cut(s)	384, 459, 544, 804, 930
BstDSI	CCRYGG	2 cut(s)	570, 874
BstF5I	GGATG	6 cut(s)	156, 247, 472, 478, 585, 814
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	2 cut(s)	749, 939
BstHHI	GCGC	3 cut(s)	49, 748, 938
BstKTI	GATC	2 cut(s)	493, 757
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	490, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	560, 895, 935
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	2 cut(s)	381, 768
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	4 cut(s)	164, 443, 541, 925
BstXI	CCANNNNNNTGG	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	622, 908
BtgI	CCRYGG	2 cut(s)	570, 874
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	6 cut(s)	156, 247, 472, 478, 585, 814
BtsIMutI	CAGTG	1 cut(s)	631
Cac8I	GCNNGC	2 cut(s)	702, 825
CfoI	GCGC	3 cut(s)	49, 748, 938
Cfr13I	GGNCC	4 cut(s)	574, 620, 621, 906
Csp6I	GTAC	3 cut(s)	523, 685, 775
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	5 cut(s)	378, 483, 571, 765, 875
CviQI	GTAC	3 cut(s)	523, 685, 775
DdeI	CTNAG	5 cut(s)	384, 459, 544, 804, 930
DpnI	GATC	2 cut(s)	492, 756
DpnII	GATC	2 cut(s)	490, 754
DrdI	GACNNNNNNGTC	1 cut(s)	655
DseDI	GACNNNNNNGTC	1 cut(s)	655
Eam1104I	CTCTTC	2 cut(s)	182, 210
EarI	CTCTTC	2 cut(s)	182, 210
Eco130I	CCWWGG	4 cut(s)	570, 616, 860, 874
Eco24I	GRGCYC	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	849
Eco47I	GGWCC	1 cut(s)	574
Eco47III	AGCGCT	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	528
EcoRV	GATATC	1 cut(s)	849
EcoT14I	CCWWGG	4 cut(s)	570, 616, 860, 874
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	4 cut(s)	570, 616, 860, 874
FaeI	CATG	5 cut(s)	381, 486, 574, 768, 878
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	5 cut(s)	377, 482, 570, 764, 874
FauI	CCCGC	1 cut(s)	761
FbaI	TGATCA	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	5 cut(s)	153, 432, 555, 675, 939
FokI	GGATG	6 cut(s)	143, 254, 479, 485, 592, 821
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	5 cut(s)	153, 432, 555, 675, 939
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	3 cut(s)	48, 747, 937
GluI	GCNGC	5 cut(s)	153, 432, 555, 675, 939
GsuI	CTGGAG	2 cut(s)	419, 770
HaeII	RGCGCY	2 cut(s)	749, 939
HaeIII	GGCC	2 cut(s)	622, 908
HapII	CCGG	1 cut(s)	577
HhaI	GCGC	3 cut(s)	49, 748, 938
Hin1II	CATG	5 cut(s)	381, 486, 574, 768, 878
Hin6I	GCGC	3 cut(s)	47, 746, 936
HinP1I	GCGC	3 cut(s)	47, 746, 936
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	2 cut(s)	112, 394
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	5 cut(s)	148, 414, 712, 718, 762
Hpy188I	TCNGA	7 cut(s)	117, 186, 316, 387, 460, 547, 648
Hpy188III	TCNNGA	7 cut(s)	83, 109, 160, 398, 494, 586, 606
Hpy8I	GTNNAC	5 cut(s)	148, 414, 712, 718, 762
Hpy99I	CGWCG	2 cut(s)	713, 716
HpyAV	CCTTC	2 cut(s)	271, 457
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	99, 714
HpyCH4V	TGCA	4 cut(s)	431, 504, 704, 889
HpyF10VI	GCNNNNNNNGC	3 cut(s)	560, 895, 935
HpyF3I	CTNAG	5 cut(s)	384, 459, 544, 804, 930
HpySE526I	ACGT	2 cut(s)	99, 714
Hsp92II	CATG	5 cut(s)	381, 486, 574, 768, 878
HspAI	GCGC	3 cut(s)	47, 746, 936
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	490, 754
LmnI	GCTCC	2 cut(s)	356, 671
Lsp1109I	GCAGC	4 cut(s)	164, 443, 541, 925
LweI	GCATC	2 cut(s)	76, 570
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	2 cut(s)	99, 714
MalI	GATC	2 cut(s)	492, 756
MbiI	CCGCTC	1 cut(s)	674
MboI	GATC	2 cut(s)	490, 754
MboII	GAAGA	4 cut(s)	199, 227, 411, 415
MhlI	GDGCHC	2 cut(s)	385, 624
MluCI	AATT	6 cut(s)	180, 192, 360, 435, 509, 792
MlyI	GAGTC	1 cut(s)	388
MseI	TTAA	5 cut(s)	363, 666, 786, 819, 836
MslI	CAYNNNNRTG	1 cut(s)	879
MspCI	CTTAAG	1 cut(s)	835
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	1 cut(s)	530
Mva1269I	GAATGC	2 cut(s)	261, 704
MvaI	CCWGG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	560, 895, 935
NcoI	CCATGG	2 cut(s)	570, 874
NdeII	GATC	2 cut(s)	490, 754
NlaIII	CATG	5 cut(s)	381, 486, 574, 768, 878
NlaIV	GGNNCC	1 cut(s)	622
NmeAIII	GCCGAG	1 cut(s)	853
NspI	RCATGY	2 cut(s)	381, 768
PctI	GAATGC	2 cut(s)	261, 704
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	154, 433, 556, 676, 940
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	100
PshBI	ATTAAT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	622
PspOMI	GGGCCC	1 cut(s)	620
PspPI	GGNCC	4 cut(s)	574, 620, 621, 906
PstI	CTGCAG	1 cut(s)	433
RsaI	GTAC	3 cut(s)	524, 686, 776
RsaNI	GTAC	3 cut(s)	523, 685, 775
RseI	CAYNNNNRTG	1 cut(s)	879
SalI	GTCGAC	1 cut(s)	710
SaqAI	TTAA	5 cut(s)	363, 666, 786, 819, 836
SatI	GCNGC	5 cut(s)	153, 432, 555, 675, 939
Sau3AI	GATC	2 cut(s)	490, 754
Sau96I	GGNCC	4 cut(s)	574, 620, 621, 906
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	385, 624
SfaNI	GCATC	2 cut(s)	76, 570
SfcI	CTRYAG	1 cut(s)	429
SgrDI	CGTCGACG	1 cut(s)	710
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	2 cut(s)	584, 835
SmoI	CTYRAG	2 cut(s)	584, 835
Sse9I	AATT	6 cut(s)	180, 192, 360, 435, 509, 792
SsiI	CCGC	2 cut(s)	674, 768
SspMI	CTAG	1 cut(s)	725
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	4 cut(s)	570, 616, 860, 874
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	102, 717
TaqI	TCGA	2 cut(s)	711, 742
TasI	AATT	6 cut(s)	180, 192, 360, 435, 509, 792
TauI	GCSGC	1 cut(s)	677
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	5 cut(s)	363, 666, 786, 819, 836
Tru9I	TTAA	5 cut(s)	363, 666, 786, 819, 836
TscAI	CASTG	1 cut(s)	631
TseI	GCWGC	4 cut(s)	152, 431, 554, 938
TspDTI	ATGAA	4 cut(s)	342, 725, 825, 882
TspGWI	ACGGA	1 cut(s)	684
TspRI	CASTG	1 cut(s)	631
Vha464I	CTTAAG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	574
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	2 cut(s)	381, 768
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.