Rorug07G0119000

Belongs to the 3-beta-HSD family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
9339182 .. 9343425
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0119000.1

Sequence Viewer

Length: 3519 bp
ATGTTTCCAGCTGCAGTGAATGATCGGGGAGACCAACCTCCAAATATTTGGCTCATTTGTGATCAGGCTGCTCAACCAACCATATTACTAGCTACTGATCAGCAGCTCACGGTTTCCTGCACTCTGGACACTGTGAAGTGTGTTATCACCTGGGTTTATGCTAAAACAACGGTGCTGGAGCGTCGTCGGCTTTGGAGAGTTCTTCTACAGGTTAAAAATACTTTTGTTCAAGGGCCATGGATAGTGTTGGGAGATTTTAATTGTGTTCTAGGTGCTCATGAAAAAAGAGGAGGACTTCTTCCCAGTGCAATTTCTTGTTCTGAGTTTCAAGATATGTCAACTAATTGTGAACTAGTTCATCTTCCTACTAAGGGTCTGCCTTATACTTGGACGAATAAAAGGGGTGTTAGTGCGAATATTGAAATGAGGCTCGATCGGTGCCTTAGTAATTTTTCTTGGATTGATATTTGGCGCAAGTTGGAGTGCTCCACCCTCCCTCGTTGTTCCTCAGATCATTCTCCTCTTTTAGTGTCCTTCTCAAGGCTCATGCTAATTCAGCGACCACCGTTCCGGTTTCAACGCATGTGGTTGGATCATCCATGTTTTGTTTCTTTGGTAACTGAGGTCTGGCAGAGTGCGCAATTCTTTGGTAATCCAATGTTTGTGTTGGCTTCTAAGCTTAGGACTCTTAAACAACGGATTCGGGCTTGGAATAAAACTGAGTTTGGGGATGTCAACAAAATGGTGGAGAATTCTTTTGAGGACTTGGACAAAATTCAGCAGGAAATTGCTAGTTTGGGGCCTTCAGAAGACAGGCTTTCCCAGGAAAGTGTGGCTAGCGCTCAAGTTCATATGGCCCTGGCTCATCAAGAAAAATGGTACTGTGATAAATCAAGGATTAAGTGGCTTTCAGAAGGTGATCGTAACACATCTTTCTTCCATGCAATGGTTAAGGTTCGTCAACTTAAACAATCCTTATCGGCTTTGAGGGATGGAAGCCGTGTTATTGACGATCCGAAGGAGATCAGCGACCATGTTGTTAATTATTTTAGCGACCTTTTCACTGCTGATTCTTCTGTTAGAGACACTGGTTTGGTTTCTCAAGTAATTCCCAAGCTTGTAACTAATGAAGAAAATGCTCAGCTTACGGCAATTCCCACTTCCGAAGAAATTTTTCAAGTTATGTGCTCCATGGATCATAATAGCTCTCCAGGTCCAGATGGTTTTGGGGGAGTTTTCTACATGAGATGCTGGTCGATTGTTGGTGAGGAGGTAATCCAGGCTGTTCGGAGTTTTTTCACTCACGGCTACATTCTCCCTCACTTTAATTCAAACCTGATGATTTTGATTCCTAAAGTTCCAGGTGCAGACTCGGTAACACAACTGCGTCCTATTGCTATGGGGAATTTTGTTTTCAAGCTTATTACAAAAATTATAGCAGATAGATTGGGTTGTATTGCAGCTCGGATTATATCCCCAAATCAAAGTGCTTTTCTTAAAGGTCGCACTATTGCAGATCCTATTATATTGACATCAGAGTGCATCAACCTCCTGGATCATAAGTGCAAGGGTGGAAACATAGCAATTAAATTTGATGTGCGAAAGGCTTTTGATACCCTGGACTGGAGATTCTTAATTCGCGTACTGAAGGCTTTTGGGTTTTCTGATCCTTTTGCGGATTGGATTAAAGCTATTTTGAATTCTGCACACTTGTCAATTCTTATTAATGGTGCAACGGAGGGGTTCTTCTCCTGTTCTCGGGGTGTTCGACAAGGTGATCCTTTATCACCTATTCTGTTTTGTCTTGCTGAAGAGGTATTGAGTAGGGGTCTCACCAAACTGGCAGAGGATGGCCGTACTGATTTGTTGTCAGCTCCTCTTGGTATTACTCCGCCCTCCCATGTTCTTTTCGCAGATGATATTATGGTTTTCATGCGGGGTACTAAGCGTTCGTTGAGAAATCTAATGCTTTTTATGGAGGAATATGGCTTGAATTCGGGGCAGCAAATCAACAGAGCAAAATCTATAGTTTTTTTGGGGAAATATGCCGCCCGTCGTCGTTTTATTATCCGGAAGTTTCTTGGCGTTAAGCGAGGGTCTCTTCCTTTCACTTATCTTGGCGTCCCCATTTTCCAGGGACGTCCTAAAAAACTGTATTTTCAGGCCATTGCAGATAGAGTACGATGTAAATTGGCATCTTGGAAAGGTTCTTTGCTTTCACAAGCAGGTAGGCTTCAGCTTATTCAGTCAGTAATACAAGGCATTTTGGTCTATAGTTTCCAGATTTATGAGTGGCCGACATGCCTGCTTCGTGACCTGCAATCTTGGATTAGGAATTTTTTTTGGACAGGTGATCCTTTAAAAAGAGGCATGCCTCTACTAGCTTGGCGTATTTACTGTAAACCCAAGGAGGAAGGTGGTTTGGGATTACGTGATCTCTTTGAGGCTAATCATGCTCTTCTAATAAAGCGGTGTTGGGAAGTGCTCTCTTCTTCCTCTCCTGCTTCTGTTTTGGTAAGGACTCGGTTTTTGAAAGAAGACTTTCAACCTCTAAAATCCTTTAAAAAATCCTCAGTTTGGTTGGGTCTCAAAAAAGTTTGGCCTACATTCTTCAATTCTCTACAATGGTGTGTTGGTAATGGTCGGAAAATTTCCTTTTGGCTTGATAATTGGTTAGGTGGGCCTTTGGCTTCTTCTATTGGAGTAGCTGGCGCCATTCCACTTCAAGCCAAAGTGCATGAGTTCATTGTGGATTCAAATTGGGTCCTTCCAGAAGATTTTACAGCTTCCTTCCCTCAAGTTGCTTGTAAAATAAAACAAATTGCTTTGCCTGTGGAAGACACATCGGATTCCCTTTTCTGGCCAGTTTCCTCCTCAGGTGTTCTGACAGCTAAAGAAGCCTTTACTTTCTTTTCAAGTCACATTGATCGTCGGAATTGGGGTAAAGTCATATGGAACAAAGCAATTCAGCCACGCAAAAGCCTTGTTGTTTGGAAAGCTCTTCATGGGCGGCTGCTTACAGATGATGCATTGAAGCGGCGAGGTTTTTCCCTCCCATCTTGTTGCTCTTTCTGTGGTAGTCATGCCGAGTCATATACGCATCTTCTCCTACACTGTCCTCAAACTGTGCCCTTATGGAAATGGATTTGCCTTCTTTTTTCTCATTCTTTCTCCCCTTGGAATACTCTTGAGGAAGTGTTCTTTGGAGATTTTGCTTCTACCCTCTCTAAACATAAGCGTCAGCTTTGGTTTCTAGTAATTTGCAATCTAATTTGGTATATTTGGATCACTAGAAATCTGCTGCGTTTTGAGGCTAGGGTGTTTGATGTTTTGGATGCCCAGCGTCACCTTTTGGAGTTGTTCAAGGAGTCTGCTAAGCTTTCTTTCCATCCCTACAAAAAGCACACAATTGCTTCTATTTACTCTATTCTTGGGATCTCTCAATTGTCAGCCGCTGCTACTAGTTTTATTCCGTCCTTCCATTCTTTGGAACTGGTTTCGCTCTATCATCCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

1172

Amino Acids

133.18

Weight (kDa)

9.3

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 454 - 710 3.5e-32 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 964 - 1046 1.8e-18 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2143
Acc16I TGCGCA 1 cut(s) 639
Acc36I ACCTGC 2 cut(s) 2216, 2325
AccB1I GGYRCC 2 cut(s) 438, 2711
AccB7I CCANNNNNTGG 2 cut(s) 946, 3487
AccII CGCG 1 cut(s) 1641
AccIII TCCGGA 1 cut(s) 2070
AciI CCGC 8 cut(s) 1676, 1892, 1936, 2049, 2470, 3010, 3037, 3453
AcoI YGGCCR 3 cut(s) 1852, 2294, 2861
AcsI RAATTY 9 cut(s) 751, 774, 1170, 1405, 1589, 1699, 1993, 2335, 2649
AcuI CTGAAG 4 cut(s) 789, 1667, 1830, 2219
AcyI GRCGYC 3 cut(s) 2121, 2140, 2712
AfaI GTAC 5 cut(s) 881, 1644, 1858, 1942, 2181
AfeI AGCGCT 1 cut(s) 841
AfiI CCNNNNNNNGG 8 cut(s) 371, 540, 946, 1623, 1758, 2577, 2859, 3487
AhlI ACTAGT 2 cut(s) 352, 3461
AjnI CCWGG 9 cut(s) 149, 822, 858, 1210, 1278, 1360, 1551, 1617, 2133
AjuI GAANNNNNNNTTGG 2 cut(s) 3186, 3218
Alw21I GWGCWC 4 cut(s) 277, 488, 1190, 2487
Alw26I GTCTC 5 cut(s) 24, 1077, 1835, 2103, 2591
AlwNI CAGNNNCTG 1 cut(s) 3455
Ama87I CYCGRG 1 cut(s) 1758
Aor13HI TCCGGA 1 cut(s) 2070
Aor51HI AGCGCT 1 cut(s) 841
AoxI GGCC 9 cut(s) 233, 800, 855, 1852, 2163, 2294, 2600, 2681, 2861
ApeKI GCWGC 8 cut(s) 11, 68, 103, 1460, 2002, 3013, 3301, 3455
ApoI RAATTY 9 cut(s) 751, 774, 1170, 1405, 1589, 1699, 1993, 2335, 2649
ArsI GACNNNNNNTTYG 2 cut(s) 2512, 2544
AseI ATTAAT 1 cut(s) 1725
Asp700I GAANNNNTTC 3 cut(s) 354, 1173, 2541
AspLEI GCGC 4 cut(s) 474, 640, 842, 2714
AspS9I GGNCC 6 cut(s) 233, 800, 856, 1214, 2681, 2764
AsuHPI GGTGA 8 cut(s) 139, 929, 1277, 1779, 1787, 1825, 2363, 3338
AsuNHI GCTAGC 1 cut(s) 836
AvaI CYCGRG 1 cut(s) 1758
AvaII GGWCC 2 cut(s) 1214, 2764
AxyI CCTNAGG 1 cut(s) 2875
BaeGI GKGCMC 1 cut(s) 3132
BalI TGGCCA 1 cut(s) 2863
BanI GGYRCC 2 cut(s) 438, 2711
BbsI GAAGAC 3 cut(s) 816, 2544, 2844
Bbv12I GWGCWC 4 cut(s) 277, 488, 1190, 2487
BbvI GCAGC 7 cut(s) 55, 115, 1472, 2014, 3000, 3288, 3442
BccI CCATC 5 cut(s) 986, 1214, 1844, 3064, 3396
BceAI ACGGC 4 cut(s) 984, 1164, 1321, 1839
BcgI CGANNNNNNTGC 2 cut(s) 2287, 2321
BciT130I CCWGG 9 cut(s) 151, 824, 860, 1212, 1280, 1362, 1553, 1619, 2135
BclI TGATCA 2 cut(s) 61, 97
BcoDI GTCTC 5 cut(s) 24, 1077, 1835, 2103, 2591
BcuI ACTAGT 2 cut(s) 352, 3461
BfmI CTRYAG 4 cut(s) 12, 206, 2025, 2272
BfoI RGCGCY 2 cut(s) 843, 2715
BfuAI ACCTGC 2 cut(s) 2216, 2325
BlpI GCTNAGC 2 cut(s) 1140, 3375
Bme1390I CCNGG 9 cut(s) 151, 824, 860, 1212, 1280, 1362, 1553, 1619, 2135
Bme18I GGWCC 2 cut(s) 1214, 2764
BmeT110I CYCGRG 1 cut(s) 1758
BmgT120I GGNCC 6 cut(s) 233, 800, 856, 1214, 2681, 2764
BmiI GGNNCC 4 cut(s) 440, 801, 2713, 2765
BmrFI CCNGG 9 cut(s) 151, 824, 860, 1212, 1280, 1362, 1553, 1619, 2135
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 6 cut(s) 1238, 1551, 2204, 3016, 3109, 3325
BmtI GCTAGC 1 cut(s) 840
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 3 cut(s) 816, 2544, 2844
BpmI CTGGAG 3 cut(s) 197, 1194, 1645
Bpu10I CCTNAGC 1 cut(s) 680
Bpu1102I GCTNAGC 2 cut(s) 1140, 3375
BpuEI CTTGAG 5 cut(s) 523, 828, 1086, 2781, 3209
BsaAI YACGTR 1 cut(s) 2432
BsaHI GRCGYC 3 cut(s) 2121, 2140, 2712
BsaI GGTCTC 4 cut(s) 24, 1835, 2103, 2591
BsaJI CCNNGG 9 cut(s) 150, 236, 822, 858, 1191, 1617, 2134, 2406, 3176
BsaWI WCCGGW 2 cut(s) 570, 2070
Bsc4I CCNNNNNNNGG 8 cut(s) 371, 540, 946, 1623, 1758, 2577, 2859, 3487
Bse1I ACTGG 6 cut(s) 303, 1093, 1628, 1845, 2864, 3498
Bse21I CCTNAGG 1 cut(s) 2875
Bse3DI GCAATG 2 cut(s) 951, 2166
BseAI TCCGGA 1 cut(s) 2070
BseBI CCWGG 9 cut(s) 151, 824, 860, 1212, 1280, 1362, 1553, 1619, 2135
BseDI CCNNGG 9 cut(s) 150, 236, 822, 858, 1191, 1617, 2134, 2406, 3176
BseGI GGATG 7 cut(s) 595, 736, 997, 1855, 3340, 3388, 3508
BseLI CCNNNNNNNGG 8 cut(s) 371, 540, 946, 1623, 1758, 2577, 2859, 3487
BseMI GCAATG 2 cut(s) 951, 2166
BseMII CTCAG 7 cut(s) 312, 522, 612, 711, 1154, 2586, 2889
BseNI ACTGG 6 cut(s) 303, 1093, 1628, 1845, 2864, 3498
BseRI GAGGAG 5 cut(s) 303, 510, 1283, 1866, 2863
BseSI GKGCMC 1 cut(s) 3132
BseXI GCAGC 7 cut(s) 55, 115, 1472, 2014, 3000, 3288, 3442
BseYI CCCAGC 1 cut(s) 3339
BsgI GTGCAG 3 cut(s) 103, 1386, 1689
Bsh1236I CGCG 1 cut(s) 1641
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 9 cut(s) 235, 802, 857, 1854, 2165, 2296, 2602, 2683, 2863
BshNI GGYRCC 2 cut(s) 438, 2711
BsiEI CGRYCG 1 cut(s) 436
BsiHKAI GWGCWC 4 cut(s) 277, 488, 1190, 2487
BsiHKCI CYCGRG 1 cut(s) 1758
BsiSI CCGG 2 cut(s) 571, 2071
BslFI GGGAC 2 cut(s) 2108, 2151
BslI CCNNNNNNNGG 8 cut(s) 371, 540, 946, 1623, 1758, 2577, 2859, 3487
BsmAI GTCTC 5 cut(s) 24, 1077, 1835, 2103, 2591
BsmFI GGGAC 2 cut(s) 2108, 2151
BsnI GGCC 9 cut(s) 235, 802, 857, 1854, 2165, 2296, 2602, 2683, 2863
Bso31I GGTCTC 4 cut(s) 24, 1835, 2103, 2591
BsoBI CYCGRG 1 cut(s) 1758
Bsp1286I GDGCHC 5 cut(s) 277, 488, 1190, 2487, 3132
Bsp13I TCCGGA 1 cut(s) 2070
Bsp1720I GCTNAGC 2 cut(s) 1140, 3375
Bsp19I CCATGG 2 cut(s) 236, 1191
BspACI CCGC 8 cut(s) 1676, 1892, 1936, 2049, 2470, 3010, 3037, 3453
BspANI GGCC 9 cut(s) 235, 802, 857, 1854, 2165, 2296, 2602, 2683, 2863
BspCNI CTCAG 7 cut(s) 313, 521, 613, 712, 1153, 2585, 2888
BspEI TCCGGA 1 cut(s) 2070
BspFNI CGCG 1 cut(s) 1641
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 440, 801, 2713, 2765
BspMAI CTGCAG 1 cut(s) 16
BspMI ACCTGC 2 cut(s) 2216, 2325
BspOI GCTAGC 1 cut(s) 840
BspQI GCTCTTC 2 cut(s) 2463, 3006
BspT107I GGYRCC 2 cut(s) 438, 2711
BspTNI GGTCTC 4 cut(s) 24, 1835, 2103, 2591
BsrDI GCAATG 2 cut(s) 951, 2166
BsrI ACTGG 6 cut(s) 303, 1093, 1628, 1845, 2864, 3498
BssECI CCNNGG 9 cut(s) 150, 236, 822, 858, 1191, 1617, 2134, 2406, 3176
BssNI GRCGYC 3 cut(s) 2121, 2140, 2712
BssT1I CCWWGG 4 cut(s) 236, 1191, 2406, 3176
Bst2UI CCWGG 9 cut(s) 151, 824, 860, 1212, 1280, 1362, 1553, 1619, 2135
Bst4CI ACNGT 9 cut(s) 112, 133, 172, 567, 884, 2154, 2399, 3116, 3127
Bst6I CTCTTC 5 cut(s) 1806, 2106, 2463, 2494, 3006
BstACI GRCGYC 3 cut(s) 2121, 2140, 2712
BstBAI YACGTR 1 cut(s) 2432
BstC8I GCNNGC 4 cut(s) 838, 2306, 2372, 2710
BstDSI CCRYGG 2 cut(s) 236, 1191
BstENI CCTNNNNNAGG 1 cut(s) 538
BstF5I GGATG 7 cut(s) 595, 736, 997, 1855, 3340, 3388, 3508
BstFNI CGCG 1 cut(s) 1641
BstH2I RGCGCY 2 cut(s) 843, 2715
BstHHI GCGC 4 cut(s) 474, 640, 842, 2714
BstMAI GTCTC 5 cut(s) 24, 1077, 1835, 2103, 2591
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 5 cut(s) 187, 556, 637, 2453, 2897
BstNI CCWGG 9 cut(s) 151, 824, 860, 1212, 1280, 1362, 1553, 1619, 2135
BstNSI RCATGY 3 cut(s) 586, 2304, 2374
BstSCI CCNGG 9 cut(s) 149, 822, 858, 1210, 1278, 1360, 1551, 1617, 2133
BstSFI CTRYAG 4 cut(s) 12, 206, 2025, 2272
BstSLI GKGCMC 1 cut(s) 3132
BstUI CGCG 1 cut(s) 1641
BstV1I GCAGC 7 cut(s) 55, 115, 1472, 2014, 3000, 3288, 3442
BstV2I GAAGAC 3 cut(s) 816, 2544, 2844
BstX2I RGATCY 2 cut(s) 1516, 3435
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 2 cut(s) 1516, 3435
Bsu36I CCTNAGG 1 cut(s) 2875
BsuRI GGCC 9 cut(s) 235, 802, 857, 1854, 2165, 2296, 2602, 2683, 2863
BtgI CCRYGG 2 cut(s) 236, 1191
BtsCI GGATG 7 cut(s) 595, 736, 997, 1855, 3340, 3388, 3508
BtsI GCAGTG 2 cut(s) 21, 1062
BtsIMutI CAGTG 6 cut(s) 21, 129, 310, 1062, 1086, 3112
BveI ACCTGC 2 cut(s) 2216, 2325
Cac8I GCNNGC 4 cut(s) 838, 2306, 2372, 2710
CaiI CAGNNNCTG 1 cut(s) 3455
CciI TCATGA 1 cut(s) 277
CfoI GCGC 4 cut(s) 474, 640, 842, 2714
Cfr13I GGNCC 6 cut(s) 233, 800, 856, 1214, 2681, 2764
CseI GACGC 5 cut(s) 170, 1376, 2110, 3227, 3332
Csp6I GTAC 5 cut(s) 880, 1643, 1857, 1941, 2180
CspCI CAANNNNNGTGG 2 cut(s) 566, 601
CviQI GTAC 5 cut(s) 880, 1643, 1857, 1941, 2180
DinI GGCGCC 1 cut(s) 2713
DraI TTTAAA 2 cut(s) 2361, 2563
EaeI YGGCCR 3 cut(s) 1852, 2294, 2861
Eam1104I CTCTTC 5 cut(s) 1806, 2106, 2463, 2494, 3006
EarI CTCTTC 5 cut(s) 1806, 2106, 2463, 2494, 3006
EciI GGCGGA 1 cut(s) 1881
Eco130I CCWWGG 4 cut(s) 236, 1191, 2406, 3176
Eco31I GGTCTC 4 cut(s) 24, 1835, 2103, 2591
Eco47I GGWCC 2 cut(s) 1214, 2764
Eco47III AGCGCT 1 cut(s) 841
Eco57I CTGAAG 4 cut(s) 789, 1667, 1830, 2219
Eco81I CCTNAGG 1 cut(s) 2875
Eco88I CYCGRG 1 cut(s) 1758
EcoNI CCTNNNNNAGG 1 cut(s) 538
EcoO109I RGGNCCY 2 cut(s) 800, 2764
EcoRI GAATTC 3 cut(s) 751, 1699, 1993
EcoRII CCWGG 9 cut(s) 149, 822, 858, 1210, 1278, 1360, 1551, 1617, 2133
EcoT14I CCWWGG 4 cut(s) 236, 1191, 2406, 3176
EcoT22I ATGCAT 1 cut(s) 3031
EgeI GGCGCC 1 cut(s) 2713
EheI GGCGCC 1 cut(s) 2713
ErhI CCWWGG 4 cut(s) 236, 1191, 2406, 3176
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 2 cut(s) 2108, 2151
FauI CCCGC 1 cut(s) 1929
FauNDI CATATG 2 cut(s) 852, 2951
FbaI TGATCA 2 cut(s) 61, 97
FokI GGATG 7 cut(s) 582, 743, 1004, 1862, 3347, 3375, 3495
FspI TGCGCA 1 cut(s) 639
GlaI GCGC 4 cut(s) 473, 639, 841, 2713
GsaI CCCAGC 1 cut(s) 3343
GsuI CTGGAG 3 cut(s) 197, 1194, 1645
HaeII RGCGCY 2 cut(s) 843, 2715
HaeIII GGCC 9 cut(s) 235, 802, 857, 1854, 2165, 2296, 2602, 2683, 2863
HapII CCGG 2 cut(s) 571, 2071
HgaI GACGC 5 cut(s) 170, 1376, 2110, 3227, 3332
HhaI GCGC 4 cut(s) 474, 640, 842, 2714
Hin1I GRCGYC 3 cut(s) 2121, 2140, 2712
Hin6I GCGC 4 cut(s) 472, 638, 840, 2712
HinP1I GCGC 4 cut(s) 472, 638, 840, 2712
HincII GTYRAC 3 cut(s) 339, 736, 962
HindII GTYRAC 3 cut(s) 339, 736, 962
HindIII AAGCTT 4 cut(s) 677, 1115, 1418, 3377
HpaII CCGG 2 cut(s) 571, 2071
HphI GGTGA 8 cut(s) 139, 929, 1277, 1779, 1787, 1825, 2363, 3338
Hpy166II GTNNAC 5 cut(s) 339, 350, 736, 962, 2402
Hpy8I GTNNAC 5 cut(s) 339, 350, 736, 962, 2402
Hpy99I CGWCG 5 cut(s) 186, 189, 2058, 2061, 2934
HpyCH4III ACNGT 9 cut(s) 112, 133, 172, 567, 884, 2154, 2399, 3116, 3127
HpyCH4IV ACGT 2 cut(s) 2140, 2431
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 556, 637, 2453, 2897
HpySE526I ACGT 2 cut(s) 2140, 2431
Hsp92I GRCGYC 3 cut(s) 2121, 2140, 2712
HspAI GCGC 4 cut(s) 472, 638, 840, 2712
KasI GGCGCC 1 cut(s) 2711
Kpn2I TCCGGA 1 cut(s) 2070
Ksp22I TGATCA 2 cut(s) 61, 97
LguI GCTCTTC 2 cut(s) 2463, 3006
LmnI GCTCC 4 cut(s) 178, 491, 1193, 1879
Lsp1109I GCAGC 7 cut(s) 55, 115, 1472, 2014, 3000, 3288, 3442
LweI GCATC 6 cut(s) 1238, 1551, 2204, 3016, 3109, 3325
MaeII ACGT 2 cut(s) 2140, 2431
MaeIII GTNAC 7 cut(s) 616, 923, 1120, 1375, 2312, 2918, 3344
MfeI CAATTG 2 cut(s) 3408, 3443
MflI RGATCY 2 cut(s) 1516, 3435
MhlI GDGCHC 5 cut(s) 277, 488, 1190, 2487, 3132
MlsI TGGCCA 1 cut(s) 2863
MluNI TGGCCA 1 cut(s) 2863
Mly113I GGCGCC 1 cut(s) 2712
MlyI GAGTC 5 cut(s) 679, 1364, 2515, 3098, 3377
MmeI TCCRAC 4 cut(s) 459, 570, 2624, 2912
Mox20I TGGCCA 1 cut(s) 2863
Mph1103I ATGCAT 1 cut(s) 3031
MroI TCCGGA 1 cut(s) 2070
MroXI GAANNNNTTC 3 cut(s) 354, 1173, 2541
MscI TGGCCA 1 cut(s) 2863
MslI CAYNNNNRTG 1 cut(s) 1537
Msp20I TGGCCA 1 cut(s) 2863
MspA1I CMGCKG 2 cut(s) 11, 3455
MspI CCGG 2 cut(s) 571, 2071
MspR9I CCNGG 9 cut(s) 151, 824, 860, 1212, 1280, 1362, 1553, 1619, 2135
MunI CAATTG 2 cut(s) 3408, 3443
MvaI CCWGG 9 cut(s) 151, 824, 860, 1212, 1280, 1362, 1553, 1619, 2135
MvnI CGCG 1 cut(s) 1641
MwoI GCNNNNNNNGC 5 cut(s) 187, 556, 637, 2453, 2897
NarI GGCGCC 1 cut(s) 2712
NcoI CCATGG 2 cut(s) 236, 1191
NdeI CATATG 2 cut(s) 852, 2951
NheI GCTAGC 1 cut(s) 836
NlaIV GGNNCC 4 cut(s) 440, 801, 2713, 2765
NmeAIII GCCGAG 1 cut(s) 3112
NmuCI GTSAC 3 cut(s) 2312, 2918, 3344
NsbI TGCGCA 1 cut(s) 639
NsiI ATGCAT 1 cut(s) 3031
NspI RCATGY 3 cut(s) 586, 2304, 2374
PaeI GCATGC 1 cut(s) 2374
PagI TCATGA 1 cut(s) 277
PciSI GCTCTTC 2 cut(s) 2463, 3006
PcsI WCGNNNNNNNCGW 1 cut(s) 1765
PdmI GAANNNNTTC 3 cut(s) 354, 1173, 2541
PfeI GAWTC 6 cut(s) 700, 1070, 1348, 1629, 2753, 2849
PflMI CCANNNNNTGG 2 cut(s) 946, 3487
PfoI TCCNGGA 1 cut(s) 1551
Ple19I CGATCG 1 cut(s) 436
PleI GAGTC 5 cut(s) 679, 1364, 2515, 3097, 3376
PluTI GGCGCC 1 cut(s) 2715
PpsI GAGTC 5 cut(s) 679, 1364, 2515, 3097, 3376
Ppu21I YACGTR 1 cut(s) 2432
PpuMI RGGWCCY 1 cut(s) 2764
PshBI ATTAAT 1 cut(s) 1725
Psp5II RGGWCCY 1 cut(s) 2764
Psp6I CCWGG 9 cut(s) 149, 822, 858, 1210, 1278, 1360, 1551, 1617, 2133
PspFI CCCAGC 1 cut(s) 3339
PspGI CCWGG 9 cut(s) 149, 822, 858, 1210, 1278, 1360, 1551, 1617, 2133
PspN4I GGNNCC 4 cut(s) 440, 801, 2713, 2765
PspPI GGNCC 6 cut(s) 233, 800, 856, 1214, 2681, 2764
PspPPI RGGWCCY 1 cut(s) 2764
PsrI GAACNNNNNNTAC 2 cut(s) 1933, 1965
PstI CTGCAG 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 3455
PsuI RGATCY 2 cut(s) 1516, 3435
PvuI CGATCG 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 5 cut(s) 881, 1644, 1858, 1942, 2181
RsaNI GTAC 5 cut(s) 880, 1643, 1857, 1941, 2180
RseI CAYNNNNRTG 1 cut(s) 1537
SapI GCTCTTC 2 cut(s) 2463, 3006
Sau96I GGNCC 6 cut(s) 233, 800, 856, 1214, 2681, 2764
SchI GAGTC 5 cut(s) 679, 1364, 2515, 3098, 3377
ScrFI CCNGG 9 cut(s) 151, 824, 860, 1212, 1280, 1362, 1553, 1619, 2135
SduI GDGCHC 5 cut(s) 277, 488, 1190, 2487, 3132
SfaNI GCATC 6 cut(s) 1238, 1551, 2204, 3016, 3109, 3325
SfcI CTRYAG 4 cut(s) 12, 206, 2025, 2272
SfoI GGCGCC 1 cut(s) 2713
SinI GGWCC 2 cut(s) 1214, 2764
SmiMI CAYNNNNRTG 1 cut(s) 1537
SmlI CTYRAG 5 cut(s) 538, 843, 1101, 2796, 3188
SmoI CTYRAG 5 cut(s) 538, 843, 1101, 2796, 3188
SpeI ACTAGT 2 cut(s) 352, 3461
SphI GCATGC 1 cut(s) 2374
SsiI CCGC 8 cut(s) 1676, 1892, 1936, 2049, 2470, 3010, 3037, 3453
SspDI GGCGCC 1 cut(s) 2711
SspI AATATT 2 cut(s) 46, 418
StyD4I CCNGG 9 cut(s) 149, 822, 858, 1210, 1278, 1360, 1551, 1617, 2133
StyI CCWWGG 4 cut(s) 236, 1191, 2406, 3176
TaaI ACNGT 9 cut(s) 112, 133, 172, 567, 884, 2154, 2399, 3116, 3127
TaiI ACGT 2 cut(s) 2143, 2434
TaqI TCGA 3 cut(s) 432, 1256, 1768
TauI GCSGC 4 cut(s) 2051, 3013, 3040, 3455
TfiI GAWTC 6 cut(s) 700, 1070, 1348, 1629, 2753, 2849
TscAI CASTG 6 cut(s) 21, 136, 310, 1069, 1093, 3119
TseFI GTSAC 3 cut(s) 2312, 2918, 3344
TseI GCWGC 8 cut(s) 11, 68, 103, 1460, 2002, 3013, 3301, 3455
Tsp45I GTSAC 3 cut(s) 2312, 2918, 3344
TspDTI ATGAA 7 cut(s) 294, 347, 839, 1143, 1921, 2734, 2993
TspGWI ACGGA 3 cut(s) 712, 1751, 3462
TspRI CASTG 6 cut(s) 21, 136, 310, 1069, 1093, 3119
Van91I CCANNNNNTGG 2 cut(s) 946, 3487
VpaK11BI GGWCC 2 cut(s) 1214, 2764
VspI ATTAAT 1 cut(s) 1725
XagI CCTNNNNNAGG 1 cut(s) 538
XapI RAATTY 9 cut(s) 751, 774, 1170, 1405, 1589, 1699, 1993, 2335, 2649
XceI RCATGY 3 cut(s) 586, 2304, 2374
XmnI GAANNNNTTC 3 cut(s) 354, 1173, 2541
ZraI GACGTC 1 cut(s) 2141
Zsp2I ATGCAT 1 cut(s) 3031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.