AT2G24840
MADS Family

Agamous-like MADS-box protein AGL61

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002891
Physical Location & Seq
Forward (+)
10581069 .. 10582015
947 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24840.1

Sequence Viewer

Length: 795 bp
ATGTATGTTACAAAATATAAAAATAAATTACCAACTTTGCAAGTTGATCTCATAATAATGCCACACCAGACTCAAGCATGTATATATAAACAAACACTTTCTCTCCACCAAATATTCCAACAAAGAAAAGCAACTAAAACCCTCCATACAAAAAAAACTATGATGTCGAAGAAGAAAGAAAGCATCGGACGACAAAAAATTCCAATGGTAAAAATAAAGAAAGAGAGCCACCGGCAAGTCACATTCTCCAAACGCAGAGCCGGTCTCTTCAAGAAAGCTAGTGAGCTTTGCACTTTGTGTGGTGCAGAGATTGGGATCATCGTGTTTTCTCCCGCGAAAAAGCCTTTCTCATTCGGACATCCAAGTGTTGAATCTGTATTGGATCGCTACGTGTCTCGAAACAATATGTCCTTAGCTCAGTCGCAGCAACTGCAAGGAAGCCCTGCAGCGAGCTGCGAACTGAATATGCAGTTAACGCATATTTTGAGCGAGGTAGAAGAAGAGAAGAAGAAGGGTCAAGCGATGGAAGAGATGAGAAAAGAGAGTGTGAGGCGGTCGATGATTAATTGGTGGGAAAAGCCAGTAGAGGAGATGAATATGGTTCAGTTACAGGAAATGAAGTATGCATTGGAGGAGTTGAGGAAGACGGTTGTGACAAACATGGCGTCGTTTAATGAGGCCAAAGACGATGTGTTTGGTTTCTTGGACAACAAAGTGACAGTCCCTCCTTACGTGAACATGCCTTCTGGTCCCTCAAATATTTATAATTTTGCCAATGGAAATGGTTGTTTCTGA

Protein Analysis

264

Amino Acids

30.26

Weight (kDa)

9.58

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 71 - 118 1.2e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 765
AccII CGCG 1 cut(s) 335
AciI CCGC 2 cut(s) 333, 553
AclWI GGATC 2 cut(s) 323, 390
AcsI RAATTY 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 665
AdeI CACNNNGTG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 2 cut(s) 271, 371
AjuI GAANNNNNNNTTGG 2 cut(s) 611, 643
AluBI AGCT 4 cut(s) 278, 286, 416, 453
AluI AGCT 4 cut(s) 278, 286, 416, 453
Alw26I GTCTC 2 cut(s) 269, 399
AlwI GGATC 2 cut(s) 323, 390
AlwNI CAGNNNCTG 1 cut(s) 430
AoxI GGCC 1 cut(s) 678
ApeKI GCWGC 3 cut(s) 424, 446, 453
ApoI RAATTY 1 cut(s) 198
ArsI GACNNNNNNTTYG 6 cut(s) 650, 677, 682, 705, 709, 737
AseI ATTAAT 1 cut(s) 564
AspS9I GGNCC 1 cut(s) 749
AvaII GGWCC 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 650
BbvI GCAGC 3 cut(s) 436, 440, 458
BccI CCATC 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 269, 399
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 444
BisI GCNGC 3 cut(s) 425, 447, 454
BlsI GCNGC 3 cut(s) 426, 448, 455
Bme18I GGWCC 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 1 cut(s) 751
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 650
BplI GAGNNNNNCTC 2 cut(s) 249, 281
Bpu10I CCTNAGC 1 cut(s) 412
BpuEI CTTGAG 1 cut(s) 57
BsaAI YACGTR 2 cut(s) 391, 733
BsaBI GATNNNNATC 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 665
BsaI GGTCTC 1 cut(s) 269
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 709, 739
Bse118I RCCGGY 2 cut(s) 231, 260
Bse1I ACTGG 1 cut(s) 581
Bse8I GATNNNNATC 1 cut(s) 314
BseGI GGATG 1 cut(s) 358
BseJI GATNNNNATC 1 cut(s) 314
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 2 cut(s) 602, 647
BseXI GCAGC 3 cut(s) 436, 440, 458
BsgI GTGCAG 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 335
Bsh1285I CGRYCG 1 cut(s) 557
BshFI GGCC 1 cut(s) 680
BsiEI CGRYCG 1 cut(s) 557
BsiSI CCGG 2 cut(s) 232, 261
BslFI GGGAC 2 cut(s) 707, 735
BsmAI GTCTC 2 cut(s) 269, 399
BsmFI GGGAC 2 cut(s) 707, 735
BsnI GGCC 1 cut(s) 680
Bso31I GGTCTC 1 cut(s) 269
Bsp143I GATC 3 cut(s) 46, 315, 382
BspACI CCGC 2 cut(s) 333, 553
BspANI GGCC 1 cut(s) 680
BspCNI CTCAG 1 cut(s) 430
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 751
BspMAI CTGCAG 1 cut(s) 448
BspPI GGATC 2 cut(s) 323, 390
BspTNI GGTCTC 1 cut(s) 269
BsrFI RCCGGY 2 cut(s) 231, 260
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 2 cut(s) 231, 260
BssMI GATC 3 cut(s) 46, 315, 382
BssNI GRCGYC 1 cut(s) 665
Bst4CI ACNGT 2 cut(s) 649, 721
Bst6I CTCTTC 3 cut(s) 272, 495, 522
BstACI GRCGYC 1 cut(s) 665
BstAPI GCANNNNNTGC 1 cut(s) 430
BstBAI YACGTR 2 cut(s) 391, 733
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 412, 417
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 3 cut(s) 49, 318, 385
BstMAI GTCTC 2 cut(s) 269, 399
BstMBI GATC 3 cut(s) 46, 315, 382
BstMCI CGRYCG 1 cut(s) 557
BstMWI GCNNNNNNNGC 2 cut(s) 430, 475
BstNSI RCATGY 2 cut(s) 81, 742
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 3 cut(s) 436, 440, 458
BstV2I GAAGAC 1 cut(s) 650
BsuRI GGCC 1 cut(s) 680
BtgZI GCGATG 1 cut(s) 536
BtsCI GGATG 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 430
Cfr10I RCCGGY 2 cut(s) 231, 260
Cfr13I GGNCC 1 cut(s) 749
CseI GACGC 1 cut(s) 654
CviAII CATG 3 cut(s) 78, 661, 739
DdeI CTNAG 2 cut(s) 412, 417
DpnI GATC 3 cut(s) 48, 317, 384
DpnII GATC 3 cut(s) 46, 315, 382
DraIII CACNNNGTG 1 cut(s) 297
Eam1104I CTCTTC 3 cut(s) 272, 495, 522
EarI CTCTTC 3 cut(s) 272, 495, 522
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 749
EcoT22I ATGCAT 1 cut(s) 628
FaeI CATG 3 cut(s) 81, 664, 742
FaqI GGGAC 2 cut(s) 707, 735
FatI CATG 3 cut(s) 77, 660, 738
FauI CCCGC 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 425, 447, 454
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 3 cut(s) 425, 447, 454
FspBI CTAG 1 cut(s) 279
GluI GCNGC 3 cut(s) 425, 447, 454
HaeIII GGCC 1 cut(s) 680
HapII CCGG 2 cut(s) 232, 261
HgaI GACGC 1 cut(s) 654
Hin1I GRCGYC 1 cut(s) 665
Hin1II CATG 3 cut(s) 81, 664, 742
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 2 cut(s) 70, 371
HpaI GTTAAC 1 cut(s) 474
HpaII CCGG 2 cut(s) 232, 261
Hpy166II GTNNAC 2 cut(s) 474, 736
Hpy188I TCNGA 3 cut(s) 188, 356, 794
Hpy188III TCNNGA 2 cut(s) 271, 396
Hpy8I GTNNAC 2 cut(s) 474, 736
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 2 cut(s) 505, 753
HpyCH4III ACNGT 2 cut(s) 649, 721
HpyCH4IV ACGT 2 cut(s) 390, 732
HpyCH4V TGCA 7 cut(s) 40, 291, 305, 433, 446, 469, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 475
HpyF3I CTNAG 2 cut(s) 412, 417
HpySE526I ACGT 2 cut(s) 390, 732
Hsp92I GRCGYC 1 cut(s) 665
Hsp92II CATG 3 cut(s) 81, 664, 742
KspAI GTTAAC 1 cut(s) 474
Kzo9I GATC 3 cut(s) 46, 315, 382
LpnPI CCDG 7 cut(s) 80, 245, 274, 456, 594, 596, 732
Lsp1109I GCAGC 3 cut(s) 436, 440, 458
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 279
MaeII ACGT 2 cut(s) 390, 732
MaeIII GTNAC 5 cut(s) 7, 238, 606, 652, 715
MalI GATC 3 cut(s) 48, 317, 384
MboI GATC 3 cut(s) 46, 315, 382
MboII GAAGA 9 cut(s) 181, 184, 259, 509, 512, 517, 520, 539, 655
MluCI AATT 4 cut(s) 26, 198, 565, 766
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 9 cut(s) 152, 484, 543, 580, 625, 633, 670, 735, 763
Mph1103I ATGCAT 1 cut(s) 628
MseI TTAA 3 cut(s) 473, 564, 672
MslI CAYNNNNRTG 2 cut(s) 56, 363
MspI CCGG 2 cut(s) 232, 261
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 430, 475
NdeII GATC 3 cut(s) 46, 315, 382
NlaIII CATG 3 cut(s) 81, 664, 742
NlaIV GGNNCC 1 cut(s) 751
NmuCI GTSAC 3 cut(s) 238, 652, 715
NsiI ATGCAT 1 cut(s) 628
NspI RCATGY 2 cut(s) 81, 742
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 3 cut(s) 426, 448, 455
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Ppu21I YACGTR 2 cut(s) 391, 733
PshBI ATTAAT 1 cut(s) 564
PsiI TTATAA 1 cut(s) 765
PspN4I GGNNCC 1 cut(s) 751
PspPI GGNCC 1 cut(s) 749
PstI CTGCAG 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 430
RseI CAYNNNNRTG 2 cut(s) 56, 363
SaqAI TTAA 3 cut(s) 473, 564, 672
SatI GCNGC 3 cut(s) 425, 447, 454
Sau3AI GATC 3 cut(s) 46, 315, 382
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 1 cut(s) 64
SetI ASST 7 cut(s) 280, 288, 393, 418, 455, 495, 735
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 749
SmiMI CAYNNNNRTG 2 cut(s) 56, 363
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 4 cut(s) 26, 198, 565, 766
SsiI CCGC 2 cut(s) 333, 553
SspI AATATT 2 cut(s) 114, 760
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 649, 721
TaiI ACGT 2 cut(s) 393, 735
TaqI TCGA 3 cut(s) 167, 397, 557
TasI AATT 4 cut(s) 26, 198, 565, 766
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 3 cut(s) 473, 564, 672
Tru9I TTAA 3 cut(s) 473, 564, 672
TseFI GTSAC 3 cut(s) 238, 652, 715
TseI GCWGC 3 cut(s) 424, 446, 453
Tsp45I GTSAC 3 cut(s) 238, 652, 715
TspDTI ATGAA 2 cut(s) 608, 632
VpaK11BI GGWCC 1 cut(s) 749
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 1 cut(s) 198
XceI RCATGY 2 cut(s) 81, 742
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.