Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Forward (+)

64111380 .. 64113346

Gene Structure 1967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGCTACTCATTCTTGGACAAAAGAGGCTTTATCTACTAATATTGGCACCAGAAATTGGAAGGAAGCCGGATCTCCGTTTTTCTACTATGATGATGAAGAAGACCAACAAATCTAGCCAAGGTCGCCAAAAGATTCCTATCGCTAAAATAGCCAAGAGAACCAATTTACAAGTCACATTCTCCAAGCGGCGCTCGGGGCTCTTCAAGAAGGCCAGCGAGCTCTGCACACTTTGCGGTGTTGAGGTTGCAATTGTAGTCTTCTCTCCGGCGAACAAGCCGTACTCCTTCGGCCACCCGGATGTTGACTCCCTCATTGACCGGTTTCTTGCTCGAAACCCTAATTTTAATATTTCCCTTGCAGACTCTTGTCAGCAGCTTGGTGAGGCTCACAAGAATGCTAGTGCTAATGAGCTCAACATGCACCTAACAAGGATTTCGAACCAAATCGAGACTGAGAGAAAACGTGGTGAATCGCTTGATAAATTGTGCAAAACCAGCGAGTGTTGGTGGGAAAACCCAGTTGATGAACTTGGACTGGATGAGCTTCGAATAATTAAGGCTGCAATGGAGGAGCTTAAGAAGAATGTGAATGAACAAGCCAATAGGATTTGGATGGAGTCTAGTAATACTGCTAGTATTGCTAATAATTCTTCATCATTCTTTATGATGAATAATGCTCATCATAAATTTGAGAACAGTCGCAGTAGTGATCAGGTTGGATCTGATTCCATTAATATTCCTAAAGCATATGATTTTGGTTTTGCTGGGAATATTGGTCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

262

Amino Acids

29.55

Weight (kDa)

9.16

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	50 - 97	1.2e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AccB7I	CCANNNNNTGG	1 cut(s)	59
AciI	CCGC	2 cut(s)	190, 237
AclWI	GGATC	2 cut(s)	81, 730
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	689
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflII	CTTAAG	1 cut(s)	578
AgeI	ACCGGT	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	6 cut(s)	7, 223, 379, 415, 547, 577
AluI	AGCT	6 cut(s)	7, 223, 379, 415, 547, 577
Alw21I	GWGCWC	2 cut(s)	225, 417
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	2 cut(s)	81, 730
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	2 cut(s)	213, 292
ApeKI	GCWGC	2 cut(s)	376, 563
ApoI	RAATTY	1 cut(s)	689
AseI	ATTAAT	1 cut(s)	735
AsiGI	ACCGGT	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	395, 482
AsuII	TTCGAA	2 cut(s)	440, 550
AvaI	CYCGRG	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	3 cut(s)	204, 225, 417
BbsI	GAAGAC	2 cut(s)	110, 253
Bbv12I	GWGCWC	2 cut(s)	225, 417
BbvI	GCAGC	2 cut(s)	388, 550
BccI	CCATC	1 cut(s)	610
BceAI	ACGGC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	4 cut(s)	117, 402, 624, 636
BfoI	RGCGCY	1 cut(s)	196
BfrI	CTTAAG	1 cut(s)	578
BisI	GCNGC	3 cut(s)	191, 377, 564
BlsI	GCNGC	3 cut(s)	192, 378, 565
Bme1390I	CCNGG	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	515
BmuI	ACTGGG	1 cut(s)	515
BoxI	GACNNNNGTC	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	110, 253
Bpu14I	TTCGAA	2 cut(s)	440, 550
BpuMI	CCSGG	1 cut(s)	299
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	521, 543
Bse3DI	GCAATG	1 cut(s)	573
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	3 cut(s)	307, 547, 621
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	521, 543
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	2 cut(s)	388, 550
BseYI	CCCAGC	1 cut(s)	767
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	215, 294
BshNI	GGYRCC	1 cut(s)	49
BshTI	ACCGGT	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	225, 417
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	4 cut(s)	71, 269, 299, 322
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	2 cut(s)	215, 294
BsoBI	CYCGRG	1 cut(s)	196
Bsp119I	TTCGAA	2 cut(s)	440, 550
Bsp1286I	GDGCHC	3 cut(s)	204, 225, 417
Bsp143I	GATC	3 cut(s)	73, 712, 722
BspACI	CCGC	2 cut(s)	190, 237
BspANI	GGCC	2 cut(s)	215, 294
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	2 cut(s)	81, 730
BspQI	GCTCTTC	1 cut(s)	209
BspT104I	TTCGAA	2 cut(s)	440, 550
BspT107I	GGYRCC	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	573
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	521, 543
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	73, 712, 722
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	578
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstBI	TTCGAA	2 cut(s)	440, 550
BstC8I	GCNNGC	2 cut(s)	217, 221
BstDEI	CTNAG	1 cut(s)	456
BstF5I	GGATG	3 cut(s)	307, 547, 621
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	76, 715, 725
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	3 cut(s)	73, 712, 722
BstMWI	GCNNNNNNNGC	8 cut(s)	126, 152, 199, 225, 234, 421, 498, 641
BstNSI	RCATGY	1 cut(s)	424
BstPAI	GACNNNNGTC	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	388, 550
BstV2I	GAAGAC	2 cut(s)	110, 253
BstX2I	RGATCY	2 cut(s)	73, 722
BstYI	RGATCY	2 cut(s)	73, 722
BsuRI	GGCC	2 cut(s)	215, 294
BtsCI	GGATG	3 cut(s)	307, 547, 621
Cac8I	GCNNGC	2 cut(s)	217, 221
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	283
CspAI	ACCGGT	1 cut(s)	321
CviAII	CATG	1 cut(s)	421
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	3 cut(s)	75, 714, 724
DpnII	GATC	3 cut(s)	73, 712, 722
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Ecl136II	GAGCTC	2 cut(s)	223, 415
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	3 cut(s)	204, 225, 417
Eco53kI	GAGCTC	2 cut(s)	223, 415
Eco88I	CYCGRG	1 cut(s)	196
EcoICRI	GAGCTC	2 cut(s)	223, 415
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	3 cut(s)	204, 225, 417
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	424
FaiI	YATR	6 cut(s)	92, 422, 668, 687, 751, 753
FatI	CATG	1 cut(s)	420
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	3 cut(s)	191, 377, 564
FokI	GGATG	3 cut(s)	314, 554, 628
FriOI	GRGCYC	3 cut(s)	204, 225, 417
Fsp4HI	GCNGC	3 cut(s)	191, 377, 564
FspBI	CTAG	4 cut(s)	117, 402, 624, 636
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	191, 377, 564
GsaI	CCCAGC	1 cut(s)	771
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	215, 294
HapII	CCGG	4 cut(s)	71, 269, 299, 322
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	424
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	6 cut(s)	136, 308, 365, 473, 620, 728
HpaII	CCGG	4 cut(s)	71, 269, 299, 322
HphI	GGTGA	2 cut(s)	395, 482
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	727, 788
Hpy188III	TCNNGA	2 cut(s)	208, 451
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	3 cut(s)	57, 205, 298
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	6 cut(s)	228, 251, 362, 424, 492, 566
HpyF10VI	GCNNNNNNNGC	8 cut(s)	126, 152, 199, 225, 234, 421, 498, 641
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	1 cut(s)	424
HspAI	GCGC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	73, 712, 722
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	4, 574
Lsp1109I	GCAGC	2 cut(s)	388, 550
MaeI	CTAG	4 cut(s)	117, 402, 624, 636
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	3 cut(s)	75, 714, 724
MboI	GATC	3 cut(s)	73, 712, 722
MboII	GAAGA	6 cut(s)	112, 115, 196, 253, 595, 645
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	2 cut(s)	73, 722
MhlI	GDGCHC	3 cut(s)	204, 225, 417
MluCI	AATT	8 cut(s)	57, 166, 252, 343, 485, 555, 649, 689
MlyI	GAGTC	3 cut(s)	302, 359, 629
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	5 cut(s)	21, 238, 323, 379, 565
MseI	TTAA	4 cut(s)	348, 558, 579, 735
MslI	CAYNNNNRTG	2 cut(s)	300, 396
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	4 cut(s)	71, 269, 299, 322
MspR9I	CCNGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	8 cut(s)	126, 152, 199, 225, 234, 421, 498, 641
NciI	CCSGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	3 cut(s)	73, 712, 722
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	424
NspV	TTCGAA	2 cut(s)	440, 550
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	3 cut(s)	136, 473, 728
PflMI	CCANNNNNTGG	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	192, 378, 565
PleI	GAGTC	3 cut(s)	302, 359, 628
PpsI	GAGTC	3 cut(s)	302, 359, 628
PshAI	GACNNNNGTC	1 cut(s)	369
PshBI	ATTAAT	1 cut(s)	735
Psp124BI	GAGCTC	2 cut(s)	225, 417
PspFI	CCCAGC	1 cut(s)	767
PspN4I	GGNNCC	1 cut(s)	51
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PsuI	RGATCY	2 cut(s)	73, 722
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	300, 396
SacI	GAGCTC	2 cut(s)	225, 417
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	4 cut(s)	348, 558, 579, 735
SatI	GCNGC	3 cut(s)	191, 377, 564
Sau3AI	GATC	3 cut(s)	73, 712, 722
SchI	GAGTC	3 cut(s)	302, 359, 629
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	3 cut(s)	204, 225, 417
SfuI	TTCGAA	2 cut(s)	440, 550
SmiMI	CAYNNNNRTG	2 cut(s)	300, 396
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	8 cut(s)	57, 166, 252, 343, 485, 555, 649, 689
SsiI	CCGC	2 cut(s)	190, 237
SspI	AATATT	4 cut(s)	45, 352, 739, 775
SspMI	CTAG	4 cut(s)	117, 402, 624, 636
SstI	GAGCTC	2 cut(s)	225, 417
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	4 cut(s)	334, 440, 450, 550
TasI	AATT	8 cut(s)	57, 166, 252, 343, 485, 555, 649, 689
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	3 cut(s)	136, 473, 728
Tru1I	TTAA	4 cut(s)	348, 558, 579, 735
Tru9I	TTAA	4 cut(s)	348, 558, 579, 735
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	376, 563
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	5 cut(s)	113, 543, 609, 645, 686
TspGWI	ACGGA	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	59
Vha464I	CTTAAG	1 cut(s)	578
VspI	ATTAAT	1 cut(s)	735
XapI	RAATTY	1 cut(s)	689
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	4 cut(s)	117, 402, 624, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.