Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Forward (+)

22173908 .. 22174165

Gene Structure 258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1108000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGTGATGAAGATCAAGAAACCTAGCCAAGGTCGCCAAAAGATTGCCATTGCCAAAATACCAAAGAGAAATAATTTACAAGTCACATTCTCTAAACGTCGTTCAGGGCTCTTCAAGAAGGCCAGTGAACTATGCACGCTTTGTGGGGTTGAGATTGTAATCATAGTCTTCTCTCCTGCCAACAAGCCCTTCTCATTTGGCCACCCCGAGGTTGATTCCATCGTCGACTGCTTCGCAGCTCGAAAACCCTTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

86

Amino Acids

9.46

Weight (kDa)

10.26

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 66	3.4e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	29, 208
AgsI	TTSAA	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	120, 199
ApeKI	GCWGC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	160
BsaBI	GATNNNNATC	2 cut(s)	11, 158
BsaJI	CCNNGG	2 cut(s)	28, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 208
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	2 cut(s)	11, 158
BseDI	CCNNGG	2 cut(s)	28, 207
BseJI	GATNNNNATC	2 cut(s)	11, 158
BseLI	CCNNNNNNNGG	2 cut(s)	29, 208
BseMI	GCAATG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	248
BshFI	GGCC	2 cut(s)	122, 201
BsiHKCI	CYCGRG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	29, 208
BsnI	GGCC	2 cut(s)	122, 201
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	122, 201
BspQI	GCTCTTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	28, 207
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	137
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	122, 201
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	137
CviJI	RGCY	6 cut(s)	27, 109, 122, 187, 201, 239
CviKI_1	RGCY	6 cut(s)	27, 109, 122, 187, 201, 239
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	206
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	28
FaiI	YATR	2 cut(s)	133, 164
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	122, 201
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	128, 226
Hpy188III	TCNNGA	2 cut(s)	16, 115
Hpy8I	GTNNAC	2 cut(s)	128, 226
Hpy99I	CGWCG	2 cut(s)	102, 227
HpyAV	CCTTC	2 cut(s)	112, 199
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	12
LguI	GCTCTTC	1 cut(s)	116
LpnPI	CCDG	3 cut(s)	90, 136, 189
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	3 cut(s)	22, 103, 160
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	1 cut(s)	73
MluNI	TGGCCA	1 cut(s)	201
MnlI	CCTC	1 cut(s)	202
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	5 cut(s)	25, 34, 100, 213, 241
Sse9I	AATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	28
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	225, 241
TasI	AATT	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	130
XagI	CCTNNNNNAGG	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.