Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Reverse (-)

71843795 .. 71845930

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0529100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGGCATCGTCGTCGTCTCCTGTGCAAGTGCTCTATGAGTCCGGCAAATCAGATTCCGATAAGAAACGGTGCAGGAGTCGAGAAAATTCGGATGATGAGATTATTGTTTCACCAGAGCAAGAGGAAAATCAAGAGAGACCGGTGAAAAGACGAAGTGATTCCCCACTTGAGCTGTCGGTAGAAGAAAGCTTGCTCGGTCCAACAGAGAGGGAGGCGGAGCCGAATAGTATCAAGGAGAAGCTCCAACAGGAGAGAAAAACATTACGAATCTACGGGTATCGTGATGTATTGCTGGAAGCTGTGGAAAGCAGGCAGGTTGTCATTGTCGTTGGCGATACTGGTTGTGGAAAAACCACACAGATACCCCAATATCTTTACGAGGCTGGATATGGTAAAAAAGGAAGGATTGGGTGCACACAACCACATGGATTTACTGCCAGGAGTGCTGCTGCTAGAGTTTCTCAAGAAATGGGTGTCAAGCTAGGGCATGATGTGGTGGGTTATTCCATACCTTTTGAAGACTGCACATCTGAAAAGACTGTTTTGAGATACATGACTGATGGAACATTGTTGCATCAACTCTATGGAGAACCAGAGTTGATAAGCTATAGTGTGTTGATGGTAGACGAGGCCCATGAGAGAACACTCTCAACTGATATACTAGTTGGATTATTGAAGGATATTTTGCCATCTCGAACCAACCTTAAACTGCTCATCTCAACAGCAACTCTTGATTGTGCTGAAAAGTTTTGTGAACTTTTTGATTCAGCTCTAGTTCTCGACATTCGAATTCTGAGCCATTATCCTCCTCATCACCAGGACGACCACGTGTTCTACTTGGAAGCAACAGAAGCTAATAATTACTTGGAAGCTAATTACTTGGAAGCTAATTACTTGGATATAGCTATTCGTACAGCACTTGAAATTCATGAGAATGAACCAAGTGGAGATATATTGGTGTTTCTCACTGATCGAGAAGAGATAGAAGTAGCAGCACAACAATTGCATCAGCCTCATCAGCTCTCTATTTGCCCCTTCTATGAAAACATGCCTGCCGAGCTTGAAGCACAATTTTTTGAGACCACACCTAAAGGGGTCAGGAAGGTTGTCCTTGCCACAAGCATAGCCGAAACATTTTGGCCGACTAAAGCTGTGGTCAATTATGTGGTTGACTCGGGGTTTTGCAAGAATAAGTCTTATTATCCAAGCAGTGAGATGGAGTCATTAAAGTTAACTCGCATTTCAGAAGCATCAGCCATGCTAAGGGGAAGTCAAGCACTCTTGGGCAAGTGCTTCCGATTATATAAACACAATGATCACGGAAATCCAAAACCAGAAGTACAACGTAGCAACCTCGCTAATGTTGTTCTTACTCTTCGGCATCTAGGGGTTAATGACTCGACACGTTTTCATTTCTTGGATCCTCCACCTACTGAAGCGCTAAGAAAAGCCTCACAATTATTATTTGTACTTGGTGCATTAAATAATGTAGGTGAGCTAACTGAGGTTGGTGAACGGATGGCTGAGTTCCCTGTGGATGCAATGCTGTCTAAGGCGATAGTAGCTTCAGATCAGTATAAGTGCTCAAATGAGGTCATTTCTATTGTTGCCATGCTTTCCGCCGGTGATCATGATTCCGTCTTTCATCATCCGGAGGACAAACAAGCCGATGCTGACAATGCACGAATGCATTTTCACTCTGGGAATGTGGGAGATCACATTGCATTACTCAAGGTTTATAATGAATGGAAAGACGCAAACTACTCAGCCCAGTGGTGCCATGAAAACTACATTCAAGTTAGGACCATGAAAAGAGCAAGAGATATACGGGACCAACTTGAGCGGCTCTTGGAGAAGGTCGGGATTGAGCTGTCCTCAAATCCCTTTGATATGGAGCCTATAAAGAAAGCAATTACATCTGGTTTCTTCGCTCATTCTGCAAAGCTGCAGAAAACTTCTTATATACCAGTCAAACAGCCGCCAAAGAATCTCCATATACACTACAGATCAGGGCTGGCAAGAATGCTTCCGAAATGCGTTTTATACCATGAGTTGGACCTCGAAACCAATCAATACATGAGACAAGTAACGGAGATAAATTCAGAGTGGTTGCAGGAAGTAGCTCCACACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

711

Amino Acids

80.45

Weight (kDa)

5.57

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	103 - 237	1.2e-06	AAA domain
WHD_HA2	PF04408	486 - 512	5.7e-09	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	513 - 576	3.4e-09	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	634 - 711	1.7e-12	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1740
Acc36I	ACCTGC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	1776
AccB7I	CCANNNNNTGG	1 cut(s)	2053
AccBSI	CCGCTC	1 cut(s)	1843
AccI	GTMKAC	1 cut(s)	624
AccIII	TCCGGA	1 cut(s)	1651
AciI	CCGC	4 cut(s)	215, 1620, 1843, 1979
AclWI	GGATC	2 cut(s)	1415, 1428
AcoI	YGGCCR	1 cut(s)	1139
AcsI	RAATTY	4 cut(s)	85, 789, 924, 2098
AcuI	CTGAAG	2 cut(s)	1455, 1551
AcvI	CACGTG	1 cut(s)	829
AfaI	GTAC	3 cut(s)	913, 1341, 1470
AfeI	AGCGCT	1 cut(s)	1440
AfiI	CCNNNNNNNGG	2 cut(s)	1263, 2053
AflIII	ACRYGT	2 cut(s)	828, 1403
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	5 cut(s)	518, 676, 923, 1064, 1796
AhlI	ACTAGT	1 cut(s)	661
AjnI	CCWGG	2 cut(s)	437, 816
Alw21I	GWGCWC	3 cut(s)	33, 416, 1586
Alw26I	GTCTC	4 cut(s)	21, 130, 1073, 2074
Alw44I	GTGCAC	1 cut(s)	412
AlwI	GGATC	2 cut(s)	1415, 1428
Ama87I	CYCGRG	1 cut(s)	1174
Aor13HI	TCCGGA	1 cut(s)	1651
Aor51HI	AGCGCT	1 cut(s)	1440
AoxI	GGCC	2 cut(s)	630, 1139
ApaLI	GTGCAC	1 cut(s)	412
ApeKI	GCWGC	4 cut(s)	446, 449, 992, 1945
ApoI	RAATTY	4 cut(s)	85, 789, 924, 2098
AsiGI	ACCGGT	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	1441
AspS9I	GGNCC	5 cut(s)	197, 631, 1803, 1831, 2056
AsuHPI	GGTGA	6 cut(s)	102, 154, 806, 1505, 1523, 1637
AsuII	TTCGAA	1 cut(s)	787
AvaI	CYCGRG	1 cut(s)	1174
AvaII	GGWCC	4 cut(s)	197, 1803, 1831, 2056
BaeGI	GKGCMC	1 cut(s)	416
BamHI	GGATCC	1 cut(s)	1420
BanI	GGYRCC	1 cut(s)	1776
BbrPI	CACGTG	1 cut(s)	829
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	3 cut(s)	33, 416, 1586
BbvI	GCAGC	4 cut(s)	433, 436, 1004, 1932
BccI	CCATC	5 cut(s)	554, 613, 697, 1210, 1513
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	439, 818
BclI	TGATCA	2 cut(s)	1315, 1627
BcoDI	GTCTC	4 cut(s)	21, 130, 1073, 2074
BcuI	ACTAGT	1 cut(s)	661
BfaI	CTAG	5 cut(s)	453, 482, 662, 773, 1385
BfmI	CTRYAG	3 cut(s)	607, 1946, 2002
BfoI	RGCGCY	1 cut(s)	1442
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	6 cut(s)	447, 450, 993, 1844, 1946, 1979
BlsI	GCNGC	6 cut(s)	448, 451, 994, 1845, 1947, 1980
Bme1390I	CCNGG	2 cut(s)	439, 818
Bme18I	GGWCC	4 cut(s)	197, 1803, 1831, 2056
BmeT110I	CYCGRG	1 cut(s)	1174
BmgT120I	GGNCC	5 cut(s)	197, 631, 1803, 1831, 2056
BmiI	GGNNCC	5 cut(s)	219, 1422, 1778, 1832, 1896
BmrFI	CCNGG	2 cut(s)	439, 818
BmrI	ACTGGG	1 cut(s)	1765
BmsI	GCATC	7 cut(s)	14, 583, 1015, 1259, 1390, 1528, 1660
BmuI	ACTGGG	1 cut(s)	1765
BpiI	GAAGAC	1 cut(s)	525
BplI	GAGNNNNNCTC	2 cut(s)	1859, 1891
Bpu10I	CCTNAGC	1 cut(s)	1262
Bpu14I	TTCGAA	1 cut(s)	787
BpuEI	CTTGAG	4 cut(s)	188, 447, 1715, 1859
BsaAI	YACGTR	1 cut(s)	829
BsaI	GGTCTC	2 cut(s)	130, 1073
BsaWI	WCCGGW	2 cut(s)	139, 1651
Bsc4I	CCNNNNNNNGG	2 cut(s)	1263, 2053
Bse118I	RCCGGY	2 cut(s)	139, 1622
Bse1I	ACTGG	3 cut(s)	343, 1771, 1967
Bse3DI	GCAATG	2 cut(s)	1548, 1719
BseAI	TCCGGA	1 cut(s)	1651
BseBI	CCWGG	2 cut(s)	439, 818
BseGI	GGATG	4 cut(s)	97, 1524, 1543, 1648
BseLI	CCNNNNNNNGG	2 cut(s)	1263, 2053
BseMI	GCAATG	2 cut(s)	1548, 1719
BseMII	CTCAG	4 cut(s)	785, 1494, 1515, 1779
BseNI	ACTGG	3 cut(s)	343, 1771, 1967
BseRI	GAGGAG	1 cut(s)	798
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	4 cut(s)	433, 436, 1004, 1932
BsgI	GTGCAG	2 cut(s)	91, 508
BshFI	GGCC	2 cut(s)	632, 1141
BshNI	GGYRCC	1 cut(s)	1776
BshTI	ACCGGT	1 cut(s)	139
BsiHKAI	GWGCWC	3 cut(s)	33, 416, 1586
BsiHKCI	CYCGRG	1 cut(s)	1174
BsiSI	CCGG	4 cut(s)	42, 140, 1623, 1652
BslFI	GGGAC	1 cut(s)	1844
BslI	CCNNNNNNNGG	2 cut(s)	1263, 2053
BsmAI	GTCTC	4 cut(s)	21, 130, 1073, 2074
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	1844
BsmI	GAATGC	2 cut(s)	1692, 2028
BsnI	GGCC	2 cut(s)	632, 1141
Bso31I	GGTCTC	2 cut(s)	130, 1073
BsoBI	CYCGRG	1 cut(s)	1174
Bsp119I	TTCGAA	1 cut(s)	787
Bsp1286I	GDGCHC	3 cut(s)	33, 416, 1586
Bsp13I	TCCGGA	1 cut(s)	1651
Bsp143I	GATC	7 cut(s)	970, 1315, 1420, 1570, 1627, 1714, 2006
BspACI	CCGC	4 cut(s)	215, 1620, 1843, 1979
BspANI	GGCC	2 cut(s)	632, 1141
BspCNI	CTCAG	4 cut(s)	786, 1495, 1516, 1778
BspEI	TCCGGA	1 cut(s)	1651
BspHI	TCATGA	2 cut(s)	928, 1630
BspLI	GGNNCC	5 cut(s)	219, 1422, 1778, 1832, 1896
BspMAI	CTGCAG	1 cut(s)	1950
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	1415, 1428
BspT104I	TTCGAA	1 cut(s)	787
BspT107I	GGYRCC	1 cut(s)	1776
BspTNI	GGTCTC	2 cut(s)	130, 1073
BsrBI	CCGCTC	1 cut(s)	1843
BsrDI	GCAATG	2 cut(s)	1548, 1719
BsrFI	RCCGGY	2 cut(s)	139, 1622
BsrI	ACTGG	3 cut(s)	343, 1771, 1967
BssAI	RCCGGY	2 cut(s)	139, 1622
BssMI	GATC	7 cut(s)	970, 1315, 1420, 1570, 1627, 1714, 2006
Bst2UI	CCWGG	2 cut(s)	439, 818
Bst4CI	ACNGT	2 cut(s)	69, 541
Bst6I	CTCTTC	2 cut(s)	972, 1380
BstBAI	YACGTR	1 cut(s)	829
BstBI	TTCGAA	1 cut(s)	787
BstC8I	GCNNGC	4 cut(s)	191, 311, 1053, 2016
BstDEI	CTNAG	7 cut(s)	794, 1262, 1442, 1503, 1524, 1551, 1765
BstF5I	GGATG	4 cut(s)	97, 1524, 1543, 1648
BstH2I	RGCGCY	1 cut(s)	1442
BstHHI	GCGC	1 cut(s)	1441
BstKTI	GATC	7 cut(s)	973, 1318, 1423, 1573, 1630, 1717, 2009
BstMAI	GTCTC	4 cut(s)	21, 130, 1073, 2074
BstMBI	GATC	7 cut(s)	970, 1315, 1420, 1570, 1627, 1714, 2006
BstMWI	GCNNNNNNNGC	7 cut(s)	443, 851, 1018, 1057, 1562, 1679, 1937
BstNI	CCWGG	2 cut(s)	439, 818
BstNSI	RCATGY	1 cut(s)	1051
BstSCI	CCNGG	2 cut(s)	437, 816
BstSFI	CTRYAG	3 cut(s)	607, 1946, 2002
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	4 cut(s)	433, 436, 1004, 1932
BstV2I	GAAGAC	1 cut(s)	525
BstX2I	RGATCY	1 cut(s)	1420
BstYI	RGATCY	1 cut(s)	1420
BsuRI	GGCC	2 cut(s)	632, 1141
BtsCI	GGATG	4 cut(s)	97, 1524, 1543, 1648
BtsI	GCAGTG	1 cut(s)	1216
BtsIMutI	CAGTG	3 cut(s)	966, 1216, 1778
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	4 cut(s)	191, 311, 1053, 2016
CciI	TCATGA	2 cut(s)	928, 1630
CfoI	GCGC	1 cut(s)	1441
Cfr10I	RCCGGY	2 cut(s)	139, 1622
Cfr13I	GGNCC	5 cut(s)	197, 631, 1803, 1831, 2056
CseI	GACGC	1 cut(s)	1763
Csp6I	GTAC	3 cut(s)	912, 1340, 1469
CspAI	ACCGGT	1 cut(s)	139
CviQI	GTAC	3 cut(s)	912, 1340, 1469
DdeI	CTNAG	7 cut(s)	794, 1262, 1442, 1503, 1524, 1551, 1765
DpnI	GATC	7 cut(s)	972, 1317, 1422, 1572, 1629, 1716, 2008
DpnII	GATC	7 cut(s)	970, 1315, 1420, 1570, 1627, 1714, 2006
EaeI	YGGCCR	1 cut(s)	1139
Eam1104I	CTCTTC	2 cut(s)	972, 1380
EarI	CTCTTC	2 cut(s)	972, 1380
EciI	GGCGGA	2 cut(s)	230, 1609
Eco31I	GGTCTC	2 cut(s)	130, 1073
Eco47I	GGWCC	4 cut(s)	197, 1803, 1831, 2056
Eco47III	AGCGCT	1 cut(s)	1440
Eco57I	CTGAAG	2 cut(s)	1455, 1551
Eco72I	CACGTG	1 cut(s)	829
Eco88I	CYCGRG	1 cut(s)	1174
EcoRI	GAATTC	1 cut(s)	789
EcoRII	CCWGG	2 cut(s)	437, 816
EcoT22I	ATGCAT	1 cut(s)	1692
Esp3I	CGTCTC	1 cut(s)	21
FaqI	GGGAC	1 cut(s)	1844
FbaI	TGATCA	2 cut(s)	1315, 1627
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	6 cut(s)	447, 450, 993, 1844, 1946, 1979
FokI	GGATG	4 cut(s)	104, 1531, 1550, 1635
Fsp4HI	GCNGC	6 cut(s)	447, 450, 993, 1844, 1946, 1979
FspBI	CTAG	5 cut(s)	453, 482, 662, 773, 1385
GlaI	GCGC	1 cut(s)	1440
GluI	GCNGC	6 cut(s)	447, 450, 993, 1844, 1946, 1979
HaeII	RGCGCY	1 cut(s)	1442
HaeIII	GGCC	2 cut(s)	632, 1141
HapII	CCGG	4 cut(s)	42, 140, 1623, 1652
HgaI	GACGC	1 cut(s)	1763
HhaI	GCGC	1 cut(s)	1441
Hin6I	GCGC	1 cut(s)	1439
HinP1I	GCGC	1 cut(s)	1439
HincII	GTYRAC	2 cut(s)	1171, 1233
HindII	GTYRAC	2 cut(s)	1171, 1233
HindIII	AAGCTT	1 cut(s)	187
HpaI	GTTAAC	1 cut(s)	1233
HpaII	CCGG	4 cut(s)	42, 140, 1623, 1652
HphI	GGTGA	6 cut(s)	102, 154, 806, 1505, 1523, 1637
Hpy166II	GTNNAC	6 cut(s)	414, 625, 755, 1171, 1233, 1514
Hpy8I	GTNNAC	6 cut(s)	414, 625, 755, 1171, 1233, 1514
Hpy99I	CGWCG	2 cut(s)	13, 16
HpyAV	CCTTC	5 cut(s)	396, 670, 1045, 1096, 1849
HpyCH4III	ACNGT	2 cut(s)	69, 541
HpyCH4IV	ACGT	3 cut(s)	828, 1345, 1405
HpyF10VI	GCNNNNNNNGC	7 cut(s)	443, 851, 1018, 1057, 1562, 1679, 1937
HpyF3I	CTNAG	7 cut(s)	794, 1262, 1442, 1503, 1524, 1551, 1765
HpySE526I	ACGT	3 cut(s)	828, 1345, 1405
HspAI	GCGC	1 cut(s)	1439
Kpn2I	TCCGGA	1 cut(s)	1651
Ksp22I	TGATCA	2 cut(s)	1315, 1627
KspAI	GTTAAC	1 cut(s)	1233
Kzo9I	GATC	7 cut(s)	970, 1315, 1420, 1570, 1627, 1714, 2006
LmnI	GCTCC	4 cut(s)	217, 246, 1894, 2128
Lsp1109I	GCAGC	4 cut(s)	433, 436, 1004, 1932
LweI	GCATC	7 cut(s)	14, 583, 1015, 1259, 1390, 1528, 1660
MaeI	CTAG	5 cut(s)	453, 482, 662, 773, 1385
MaeII	ACGT	3 cut(s)	828, 1345, 1405
MaeIII	GTNAC	1 cut(s)	2086
MalI	GATC	7 cut(s)	972, 1317, 1422, 1572, 1629, 1716, 2008
MbiI	CCGCTC	1 cut(s)	1843
MboI	GATC	7 cut(s)	970, 1315, 1420, 1570, 1627, 1714, 2006
MboII	GAAGA	5 cut(s)	194, 530, 989, 1367, 1918
MfeI	CAATTG	1 cut(s)	1001
MflI	RGATCY	1 cut(s)	1420
MhlI	GDGCHC	3 cut(s)	33, 416, 1586
MlyI	GAGTC	5 cut(s)	47, 85, 1166, 1229, 1391
MmeI	TCCRAC	4 cut(s)	224, 268, 646, 2034
Mph1103I	ATGCAT	1 cut(s)	1692
MroI	TCCGGA	1 cut(s)	1651
MroXI	GAANNNNTTC	1 cut(s)	157
MseI	TTAA	6 cut(s)	705, 1226, 1232, 1392, 1481, 2134
MslI	CAYNNNNRTG	1 cut(s)	933
MspI	CCGG	4 cut(s)	42, 140, 1623, 1652
MspR9I	CCNGG	2 cut(s)	439, 818
MunI	CAATTG	1 cut(s)	1001
Mva1269I	GAATGC	2 cut(s)	1692, 2028
MvaI	CCWGG	2 cut(s)	439, 818
MwoI	GCNNNNNNNGC	7 cut(s)	443, 851, 1018, 1057, 1562, 1679, 1937
NdeII	GATC	7 cut(s)	970, 1315, 1420, 1570, 1627, 1714, 2006
NlaIV	GGNNCC	5 cut(s)	219, 1422, 1778, 1832, 1896
NmeAIII	GCCGAG	1 cut(s)	1081
NsiI	ATGCAT	1 cut(s)	1692
NspI	RCATGY	1 cut(s)	1051
NspV	TTCGAA	1 cut(s)	787
PagI	TCATGA	2 cut(s)	928, 1630
PctI	GAATGC	2 cut(s)	1692, 2028
PdmI	GAANNNNTTC	1 cut(s)	157
PfeI	GAWTC	6 cut(s)	53, 158, 267, 764, 1634, 1987
PflMI	CCANNNNNTGG	1 cut(s)	2053
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	6 cut(s)	448, 451, 994, 1845, 1947, 1980
PleI	GAGTC	5 cut(s)	46, 84, 1166, 1228, 1391
PmaCI	CACGTG	1 cut(s)	829
PmlI	CACGTG	1 cut(s)	829
PpsI	GAGTC	5 cut(s)	46, 84, 1166, 1228, 1391
Ppu21I	YACGTR	1 cut(s)	829
PsiI	TTATAA	1 cut(s)	1740
Psp6I	CCWGG	2 cut(s)	437, 816
PspCI	CACGTG	1 cut(s)	829
PspGI	CCWGG	2 cut(s)	437, 816
PspN4I	GGNNCC	5 cut(s)	219, 1422, 1778, 1832, 1896
PspPI	GGNCC	5 cut(s)	197, 631, 1803, 1831, 2056
PstI	CTGCAG	1 cut(s)	1950
PsuI	RGATCY	1 cut(s)	1420
RsaI	GTAC	3 cut(s)	913, 1341, 1470
RsaNI	GTAC	3 cut(s)	912, 1340, 1469
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	6 cut(s)	705, 1226, 1232, 1392, 1481, 2134
SatI	GCNGC	6 cut(s)	447, 450, 993, 1844, 1946, 1979
Sau3AI	GATC	7 cut(s)	970, 1315, 1420, 1570, 1627, 1714, 2006
Sau96I	GGNCC	5 cut(s)	197, 631, 1803, 1831, 2056
SchI	GAGTC	5 cut(s)	47, 85, 1166, 1229, 1391
ScrFI	CCNGG	2 cut(s)	439, 818
SduI	GDGCHC	3 cut(s)	33, 416, 1586
SfaNI	GCATC	7 cut(s)	14, 583, 1015, 1259, 1390, 1528, 1660
SfcI	CTRYAG	3 cut(s)	607, 1946, 2002
SfuI	TTCGAA	1 cut(s)	787
SgrAI	CRCCGGYG	1 cut(s)	1622
SinI	GGWCC	4 cut(s)	197, 1803, 1831, 2056
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	4 cut(s)	167, 462, 1730, 1838
SmoI	CTYRAG	4 cut(s)	167, 462, 1730, 1838
SpeI	ACTAGT	1 cut(s)	661
SsiI	CCGC	4 cut(s)	215, 1620, 1843, 1979
SspMI	CTAG	5 cut(s)	453, 482, 662, 773, 1385
StyD4I	CCNGG	2 cut(s)	437, 816
TaaI	ACNGT	2 cut(s)	69, 541
TaiI	ACGT	3 cut(s)	831, 1348, 1408
TaqI	TCGA	7 cut(s)	79, 694, 780, 787, 973, 1400, 2061
TaqII	GACCGA	1 cut(s)	185
TatI	WGTACW	2 cut(s)	1339, 1468
TauI	GCSGC	2 cut(s)	1846, 1981
TfiI	GAWTC	6 cut(s)	53, 158, 267, 764, 1634, 1987
Tru1I	TTAA	6 cut(s)	705, 1226, 1232, 1392, 1481, 2134
Tru9I	TTAA	6 cut(s)	705, 1226, 1232, 1392, 1481, 2134
TscAI	CASTG	3 cut(s)	973, 1216, 1778
TseI	GCWGC	4 cut(s)	446, 449, 992, 1945
TspDTI	ATGAA	8 cut(s)	917, 951, 1056, 1400, 1634, 1758, 1797, 1823
TspGWI	ACGGA	4 cut(s)	1335, 1531, 1627, 2105
TspRI	CASTG	3 cut(s)	973, 1216, 1778
Van91I	CCANNNNNTGG	1 cut(s)	2053
VneI	GTGCAC	1 cut(s)	412
VpaK11BI	GGWCC	4 cut(s)	197, 1803, 1831, 2056
XapI	RAATTY	4 cut(s)	85, 789, 924, 2098
XceI	RCATGY	1 cut(s)	1051
XmiI	GTMKAC	1 cut(s)	624
XmnI	GAANNNNTTC	1 cut(s)	157
XspI	CTAG	5 cut(s)	453, 482, 662, 773, 1385
Zsp2I	ATGCAT	1 cut(s)	1692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.