RLG00000019567
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002891
Physical Location & Seq
Forward (+)
53675886 .. 53676301
416 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019567

Sequence Viewer

Length: 306 bp
ATGGTGATGAAGAGCAAGAGGCCTAGCCAGGGTCGCCAAAAGATTGTGATTGCCAGAATACCAAAGAGAAGTAACTTGCAAGTCACATTCTTGAAAAGGCTAGTGAGCTCTGCACCCTCTGTGGAGTTGAGATTTACTCAACAAGCTCAGTCCTGCAAGGAGGTTAGTGTTGCACATAAGCTCAATATGCAGCTAACACGGACCCAAGGTCGCTTGGAGGCTGAGAAACAGAGAGGAGAAGCGCTTGACAAGATGAATGAGGACAGCGAGAGATCAAGTCAGTGTTGGTGGGAAAAACTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

102

Amino Acids

11.68

Weight (kDa)

10.34

Isoelectric Point (pI)

66.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 94
AhdI GACNNNNNGTC 1 cut(s) 207
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 4 cut(s) 108, 146, 181, 193
AluI AGCT 4 cut(s) 108, 146, 181, 193
Alw21I GWGCWC 1 cut(s) 110
Aor51HI AGCGCT 1 cut(s) 243
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 29
BfaI CTAG 2 cut(s) 24, 101
BfoI RGCGCY 1 cut(s) 245
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 201
BmeRI GACNNNNNGTC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BsaJI CCNNGG 2 cut(s) 28, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 28, 205
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 161, 213
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 272
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 2 cut(s) 160, 214
BspLI GGNNCC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 28, 205
BssMI GATC 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 147, 222
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 275
BstMBI GATC 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 33, 187
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 287
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 201
CviJI RGCY 8 cut(s) 22, 27, 100, 108, 146, 181, 193, 221
CviKI_1 RGCY 8 cut(s) 22, 27, 100, 108, 146, 181, 193, 221
DdeI CTNAG 2 cut(s) 147, 222
DpnI GATC 1 cut(s) 274
DpnII GATC 1 cut(s) 272
DriI GACNNNNNGTC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 5
Eam1105I GACNNNNNGTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 5
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 201
Eco47III AGCGCT 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 205
FaiI YATR 2 cut(s) 177, 188
Fnu4HI GCNGC 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 2 cut(s) 24, 101
GlaI GCGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 1 cut(s) 22
HhaI GCGC 1 cut(s) 244
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 91
HpyCH4V TGCA 5 cut(s) 79, 113, 156, 173, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 187
HpyF3I CTNAG 2 cut(s) 147, 222
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 272
LguI GCTCTTC 1 cut(s) 5
LpnPI CCDG 4 cut(s) 14, 41, 67, 166
Lsp1109I GCAGC 1 cut(s) 202
MaeI CTAG 2 cut(s) 24, 101
MaeIII GTNAC 2 cut(s) 71, 82
MalI GATC 1 cut(s) 274
MboI GATC 1 cut(s) 272
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 110
MnlI CCTC 6 cut(s) 12, 127, 154, 211, 227, 253
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 33, 187
NdeII GATC 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 82
PceI AGGCCT 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 201
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 5
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 1 cut(s) 272
Sau96I GGNCC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 110
SetI ASST 6 cut(s) 110, 148, 165, 183, 195, 211
SinI GGWCC 1 cut(s) 201
SseBI AGGCCT 1 cut(s) 22
SspMI CTAG 2 cut(s) 24, 101
SstI GAGCTC 1 cut(s) 110
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 205
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 23, 269
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 201
XspI CTAG 2 cut(s) 24, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.