Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Reverse (-)

6202476 .. 6209007

Gene Structure 6532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTGAGGAAAAGCAAGGGTCGTCAGAAGGTGGAGATGGTCAAAATGGCCAATGACAGCAACCTTCAAGTGACTTTCTCAAAGCGCCGCTCTGGTCTCTTCAAGAAGGCCAGCGAGCTTTGCACGCTCTGCGGCGCTGAGATAGCCATCATAGTATTCTCACCTGGTAGGAAGGTCTTTTCCTTCGGCCACCCCTGCGTGGAGACTGTTGTAGACCGTTTCCTCACCCGAAATCCTCCTCTCCACCACCAGAACTCGGGCACCATGCAGCTCATCGAGGCTCACCGCAATGCTAACGTTCGGGAGCTCAATGCCGAGCTGACTCAGCTCAACATGCACCTAACAAGGATTTCGAACCAAATCGAGACTGAGAGAAAACGTGGTGAATCGCTTGATAAATTGAGCAAAACCAGCGAGTGTTGGTGGGAAAACCCAGTTGATGAACTTGGACAGGATGAGCTTCAAATACTTAAGGCTGCAATGGAGGAGCTCAAGAAGAATGTGAATGAACAAGCCAATAGGATTTGGATGGAGTCTAGTAATACTACTAGTATTGCTAATAATTCTTCATCATTCTTTATGATGAATAATGCTCATCATATATTTGAGAACAGTCGCAGTAGTGATCAGGTTGGATCTGATTCCATTAATATTCCTAGAGCATATGATTTTGGTTTTGCTGGGAATATTGGTCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

233

Amino Acids

26.42

Weight (kDa)

8.36

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	1.5e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	3 cut(s)	88, 132, 286
AclI	AACGTT	1 cut(s)	297
AclWI	GGATC	1 cut(s)	643
AcoI	YGGCCR	2 cut(s)	48, 187
AfiI	CCNNNNNNNGG	2 cut(s)	199, 256
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	3 cut(s)	68, 103, 464
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	7 cut(s)	118, 271, 307, 319, 328, 460, 490
AluI	AGCT	7 cut(s)	118, 271, 307, 319, 328, 460, 490
Alw21I	GWGCWC	2 cut(s)	309, 492
Alw26I	GTCTC	3 cut(s)	101, 197, 359
AlwI	GGATC	1 cut(s)	643
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	3 cut(s)	48, 108, 187
ApeKI	GCWGC	2 cut(s)	268, 476
AseI	ATTAAT	1 cut(s)	648
AspLEI	GCGC	2 cut(s)	87, 137
AsuHPI	GGTGA	5 cut(s)	16, 153, 217, 275, 395
AsuII	TTCGAA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	260
BanII	GRGCYC	2 cut(s)	309, 492
Bbv12I	GWGCWC	2 cut(s)	309, 492
BbvI	GCAGC	2 cut(s)	280, 463
BccI	CCATC	3 cut(s)	31, 155, 523
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	3 cut(s)	101, 197, 359
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	3 cut(s)	537, 549, 657
BfoI	RGCGCY	2 cut(s)	88, 138
BfrI	CTTAAG	1 cut(s)	470
BisI	GCNGC	4 cut(s)	88, 133, 269, 477
BlsI	GCNGC	4 cut(s)	89, 134, 270, 478
Bme1390I	CCNGG	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	428
BmuI	ACTGGG	1 cut(s)	428
Bpu14I	TTCGAA	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 256
Bse1I	ACTGG	1 cut(s)	434
Bse3DI	GCAATG	2 cut(s)	295, 486
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	460, 534
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	199, 256
BseMI	GCAATG	2 cut(s)	295, 486
BseMII	CTCAG	3 cut(s)	129, 338, 360
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	2 cut(s)	228, 500
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	280, 463
BseYI	CCCAGC	1 cut(s)	680
BshFI	GGCC	3 cut(s)	50, 110, 189
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	309, 492
BsiHKCI	CYCGRG	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	199, 256
BsmAI	GTCTC	3 cut(s)	101, 197, 359
BsnI	GGCC	3 cut(s)	50, 110, 189
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	353
Bsp1286I	GDGCHC	3 cut(s)	263, 309, 492
Bsp143I	GATC	2 cut(s)	625, 635
BspACI	CCGC	3 cut(s)	88, 132, 286
BspANI	GGCC	3 cut(s)	50, 110, 189
BspCNI	CTCAG	3 cut(s)	130, 337, 361
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	643
BspT104I	TTCGAA	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	260
BspTI	CTTAAG	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	2 cut(s)	295, 486
BsrI	ACTGG	1 cut(s)	434
BssMI	GATC	2 cut(s)	625, 635
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	208, 218, 614
Bst6I	CTCTTC	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	112, 116, 125
BstDEI	CTNAG	3 cut(s)	138, 324, 369
BstF5I	GGATG	2 cut(s)	460, 534
BstH2I	RGCGCY	2 cut(s)	88, 138
BstHHI	GCGC	2 cut(s)	87, 137
BstKTI	GATC	2 cut(s)	628, 638
BstMAI	GTCTC	3 cut(s)	101, 197, 359
BstMBI	GATC	2 cut(s)	625, 635
BstMWI	GCNNNNNNNGC	8 cut(s)	120, 124, 129, 143, 195, 325, 334, 411
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	280, 463
BstX2I	RGATCY	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	50, 110, 189
BtsCI	GGATG	2 cut(s)	460, 534
Cac8I	GCNNGC	3 cut(s)	112, 116, 125
CfoI	GCGC	2 cut(s)	87, 137
CsiI	ACCWGGT	1 cut(s)	163
CviAII	CATG	2 cut(s)	265, 334
DdeI	CTNAG	3 cut(s)	138, 324, 369
DpnI	GATC	2 cut(s)	627, 637
DpnII	GATC	2 cut(s)	625, 635
EaeI	YGGCCR	2 cut(s)	48, 187
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	2 cut(s)	307, 490
Eco24I	GRGCYC	2 cut(s)	309, 492
Eco31I	GGTCTC	1 cut(s)	101
Eco53kI	GAGCTC	2 cut(s)	307, 490
Eco88I	CYCGRG	1 cut(s)	256
EcoICRI	GAGCTC	2 cut(s)	307, 490
EcoRII	CCWGG	1 cut(s)	163
EcoT38I	GRGCYC	2 cut(s)	309, 492
FaeI	CATG	2 cut(s)	268, 337
FaiI	YATR	8 cut(s)	152, 266, 335, 581, 600, 602, 664, 666
FatI	CATG	2 cut(s)	264, 333
FauNDI	CATATG	1 cut(s)	664
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	88, 133, 269, 477
FokI	GGATG	2 cut(s)	467, 541
FriOI	GRGCYC	2 cut(s)	309, 492
Fsp4HI	GCNGC	4 cut(s)	88, 133, 269, 477
FspBI	CTAG	3 cut(s)	537, 549, 657
GlaI	GCGC	2 cut(s)	86, 136
GluI	GCNGC	4 cut(s)	88, 133, 269, 477
GsaI	CCCAGC	1 cut(s)	684
HaeII	RGCGCY	2 cut(s)	88, 138
HaeIII	GGCC	3 cut(s)	50, 110, 189
HhaI	GCGC	2 cut(s)	87, 137
Hin1II	CATG	2 cut(s)	268, 337
Hin6I	GCGC	2 cut(s)	85, 135
HinP1I	GCGC	2 cut(s)	85, 135
HinfI	GANTC	4 cut(s)	322, 386, 533, 641
HphI	GGTGA	5 cut(s)	16, 153, 217, 275, 395
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	27, 640, 701
Hpy188III	TCNNGA	4 cut(s)	103, 302, 364, 493
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	5 cut(s)	22, 74, 100, 166, 193
HpyCH4III	ACNGT	3 cut(s)	208, 218, 614
HpyCH4IV	ACGT	2 cut(s)	297, 379
HpyCH4V	TGCA	4 cut(s)	123, 268, 337, 479
HpyF10VI	GCNNNNNNNGC	8 cut(s)	120, 124, 129, 143, 195, 325, 334, 411
HpyF3I	CTNAG	3 cut(s)	138, 324, 369
HpySE526I	ACGT	2 cut(s)	297, 379
Hsp92II	CATG	2 cut(s)	268, 337
HspAI	GCGC	2 cut(s)	85, 135
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	2 cut(s)	625, 635
LmnI	GCTCC	2 cut(s)	304, 487
Lsp1109I	GCAGC	2 cut(s)	280, 463
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	3 cut(s)	537, 549, 657
MaeII	ACGT	2 cut(s)	297, 379
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	627, 637
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	2 cut(s)	625, 635
MboII	GAAGA	3 cut(s)	91, 508, 558
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	3 cut(s)	263, 309, 492
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	398, 562
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	2 cut(s)	316, 542
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	5 cut(s)	233, 246, 249, 271, 478
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	2 cut(s)	471, 648
MslI	CAYNNNNRTG	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	50
MspCI	CTTAAG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	8 cut(s)	120, 124, 129, 143, 195, 325, 334, 411
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	2 cut(s)	625, 635
NlaIII	CATG	2 cut(s)	268, 337
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	386, 641
PkrI	GCNGC	4 cut(s)	89, 134, 270, 478
PleI	GAGTC	2 cut(s)	316, 541
PpsI	GAGTC	2 cut(s)	316, 541
PshBI	ATTAAT	1 cut(s)	648
Psp124BI	GAGCTC	2 cut(s)	309, 492
Psp1406I	AACGTT	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	635
RseI	CAYNNNNRTG	1 cut(s)	288
SacI	GAGCTC	2 cut(s)	309, 492
SaqAI	TTAA	2 cut(s)	471, 648
SatI	GCNGC	4 cut(s)	88, 133, 269, 477
Sau3AI	GATC	2 cut(s)	625, 635
SchI	GAGTC	2 cut(s)	316, 542
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	3 cut(s)	263, 309, 492
SexAI	ACCWGGT	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	2 cut(s)	470, 491
SmoI	CTYRAG	2 cut(s)	470, 491
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	2 cut(s)	398, 562
SsiI	CCGC	3 cut(s)	88, 132, 286
SspI	AATATT	2 cut(s)	652, 688
SspMI	CTAG	3 cut(s)	537, 549, 657
SstI	GAGCTC	2 cut(s)	309, 492
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	208, 218, 614
TaiI	ACGT	2 cut(s)	300, 382
TaqI	TCGA	3 cut(s)	276, 353, 363
TasI	AATT	2 cut(s)	398, 562
TauI	GCSGC	2 cut(s)	90, 135
TfiI	GAWTC	2 cut(s)	386, 641
Tru1I	TTAA	2 cut(s)	471, 648
Tru9I	TTAA	2 cut(s)	471, 648
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	268, 476
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	4 cut(s)	456, 522, 558, 599
Vha464I	CTTAAG	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	648
XceI	RCATGY	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	3 cut(s)	537, 549, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.