Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Reverse (-)

57219323 .. 57219691

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCAGCTAACCGGGACTCAAGGCCGACTGGAGGCTGAGAAAAAGCGAGGAGAAGAGCTTGACAAGATGAGTAAAGACAGCCAGCGATCGAGTCATTGTTGGTGGGAGAAGCCAATTGAGGAACTTGGATTGGATGGGCTCCAGATGTTGAAGGCTACAATGGAGGAGCTCAAGAAGAATGTGATGGAACAAATCCACAAAATAAATGGTCCTGCCAAATTTTCAGTACCATTCTCTGTGATGAATCTTGATCATCATCTTTCTGAGAGAAAGTTTGCTGAGATTAATGGATGTCATGGTTCCATGATCCCTTCTTGTGCCTATGGCTATGGACATGGTTCTTTTTTTTTGAAGGCGGTTACGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

122

Amino Acids

13.78

Weight (kDa)

7.01

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	151, 352
AluBI	AGCT	4 cut(s)	7, 58, 169, 366
AluI	AGCT	4 cut(s)	7, 58, 169, 366
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	218
AseI	ATTAAT	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	209
BanII	GRGCYC	2 cut(s)	141, 171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	128, 178
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	13
BfaI	CTAG	1 cut(s)	367
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	140, 301
BmrFI	CCNGG	1 cut(s)	13
BpmI	CTGGAG	2 cut(s)	50, 125
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	255
BseGI	GGATG	2 cut(s)	139, 296
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	3 cut(s)	27, 255, 270
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	63, 179
BseXI	GCAGC	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	141, 171
Bsp143I	GATC	3 cut(s)	86, 250, 306
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	3 cut(s)	28, 256, 271
BspLI	GGNNCC	2 cut(s)	140, 301
BspPI	GGATC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	33
BssMI	GATC	3 cut(s)	86, 250, 306
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	3 cut(s)	36, 264, 279
BstF5I	GGATG	2 cut(s)	139, 296
BstKTI	GATC	3 cut(s)	89, 253, 309
BstMBI	GATC	3 cut(s)	86, 250, 306
BstMCI	CGRYCG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	139, 296
Cac8I	GCNNGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	3 cut(s)	296, 304, 335
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	3 cut(s)	36, 264, 279
DpnI	GATC	3 cut(s)	88, 252, 308
DpnII	GATC	3 cut(s)	86, 250, 306
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	2 cut(s)	141, 171
Eco47I	GGWCC	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	141, 171
FaeI	CATG	3 cut(s)	299, 307, 338
FaiI	YATR	5 cut(s)	297, 305, 324, 330, 336
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	3 cut(s)	295, 303, 334
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	146, 303
FriOI	GRGCYC	2 cut(s)	141, 171
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	367
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	2 cut(s)	50, 125
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	3 cut(s)	299, 307, 338
HinfI	GANTC	3 cut(s)	16, 91, 244
HpaII	CCGG	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	3 cut(s)	142, 172, 248
HpyAV	CCTTC	3 cut(s)	145, 321, 346
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	3 cut(s)	36, 264, 279
Hsp92II	CATG	3 cut(s)	299, 307, 338
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	86, 250, 306
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	144, 166
LpnPI	CCDG	5 cut(s)	14, 25, 95, 155, 225
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	3 cut(s)	88, 252, 308
MboI	GATC	3 cut(s)	86, 250, 306
MboII	GAAGA	2 cut(s)	65, 187
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	2 cut(s)	141, 171
MluCI	AATT	2 cut(s)	114, 218
MlyI	GAGTC	2 cut(s)	10, 100
MnlI	CCTC	4 cut(s)	25, 41, 112, 157
MseI	TTAA	1 cut(s)	285
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	3 cut(s)	86, 250, 306
NlaIII	CATG	3 cut(s)	299, 307, 338
NlaIV	GGNNCC	2 cut(s)	140, 301
PciSI	GCTCTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	6
Ple19I	CGATCG	1 cut(s)	89
PleI	GAGTC	2 cut(s)	10, 99
PpsI	GAGTC	2 cut(s)	10, 99
PshBI	ATTAAT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	140, 301
PspPI	GGNCC	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	86, 250, 306
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	2 cut(s)	10, 100
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	141, 171
SetI	ASST	4 cut(s)	9, 60, 171, 368
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	18, 170
SmoI	CTYRAG	2 cut(s)	18, 170
Sse9I	AATT	2 cut(s)	114, 218
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	1 cut(s)	367
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	11
TaqI	TCGA	1 cut(s)	89
TasI	AATT	2 cut(s)	114, 218
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	209
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.