Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Forward (+)

18597016 .. 18597729

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1112400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTGATGAAGATCAAGAAACCTAGCCAAGGTCGCCAAAAGATTGCCATTGCCAAAATACCAAAGAGAAATAATTTACAAGTCACATTCTCAAAACGTCGTTCAGGGCTCTTCAAGAAGGCCAGTGAACTATGCACACTTTGTGGGGTTGAGATTGCAATCATAGTCTTCTCTCCTGCAAACAAGCCGTTCTCCTTTGGCCACCCAGAGGTTGATTCCATCGTCGACCGCTTCGTTGCTCGAAACCCTTACCCTAATTTCCAAGCAGGGTCCACAGGTTCTACTCAACAGCTTGTTGAGGTTCACAGGAATGCTAGTGTCCATGAGCTTAACATGCAGCTGACCCAGGTTGTGAACCAGTTGGAGGCTGAGAAAAAATGTGGAGAAGCACTTGATAAAATAAGCAAAGCTAGTGAAAAGCAGTGTTGGTGGGAAAGGTCTGTGGAGGAACTAGGGTTTCATGAGCTTCAGATATTGAAGGCTTCATTGGAGGAGCTCAAGAAAAATATGACTAAACAAGCCAATGGGATTTTGATGGAGTCTAGCGCTGCTGCTGTTGCTAATTGTTCTTCATCATCATCACCATTTTTCATGATGAACATTAATGGTGTTGTTCAAGGTGACGATCTTCGTTGTTTCGAAAGCAAAATTAAACCGACAAATCAACTTGGATCTGCATATAGTTTCGGTTATGCTGGGCATAGTCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

238

Amino Acids

26.28

Weight (kDa)

9.2

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 66	8e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	452
AdeI	CACNNNGTG	1 cut(s)	143
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	3 cut(s)	29, 208, 364
AgsI	TTSAA	3 cut(s)	115, 478, 617
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	6 cut(s)	292, 328, 340, 410, 466, 496
AluI	AGCT	6 cut(s)	292, 328, 340, 410, 466, 496
Alw21I	GWGCWC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	679
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	2 cut(s)	120, 199
ApeKI	GCWGC	3 cut(s)	337, 548, 551
AseI	ATTAAT	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	16, 573, 632
AsuII	TTCGAA	1 cut(s)	639
AvaII	GGWCC	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	201
BanII	GRGCYC	2 cut(s)	111, 498
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	349, 535, 538
BccI	CCATC	2 cut(s)	227, 529
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	347
BfaI	CTAG	5 cut(s)	24, 315, 411, 452, 543
BfoI	RGCGCY	1 cut(s)	549
BisI	GCNGC	3 cut(s)	338, 549, 552
BlsI	GCNGC	3 cut(s)	339, 550, 553
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	160
Bpu14I	TTCGAA	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	482
BsaBI	GATNNNNATC	2 cut(s)	11, 158
BsaJI	CCNNGG	2 cut(s)	28, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 208, 364
Bse1I	ACTGG	2 cut(s)	123, 358
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	2 cut(s)	11, 158
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	28, 345
BseJI	GATNNNNATC	2 cut(s)	11, 158
BseLI	CCNNNNNNNGG	3 cut(s)	29, 208, 364
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	123, 358
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	349, 535, 538
BseYI	CCCAGC	1 cut(s)	695
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	122, 201
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	498
BslI	CCNNNNNNNGG	3 cut(s)	29, 208, 364
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	122, 201
Bsp119I	TTCGAA	1 cut(s)	639
Bsp1286I	GDGCHC	2 cut(s)	111, 498
Bsp143I	GATC	3 cut(s)	12, 625, 671
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	122, 201
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	2 cut(s)	460, 591
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	679
BspQI	GCTCTTC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	123, 358
BssECI	CCNNGG	2 cut(s)	28, 345
BssMI	GATC	3 cut(s)	12, 625, 671
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	639
BstDEI	CTNAG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	3 cut(s)	15, 628, 674
BstMBI	GATC	3 cut(s)	12, 625, 671
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 334, 557
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	349, 535, 538
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	122, 201
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	2 cut(s)	130, 428
CciI	TCATGA	2 cut(s)	460, 591
CfoI	GCGC	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	270
CviAII	CATG	4 cut(s)	323, 334, 461, 592
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	3 cut(s)	14, 627, 673
DpnII	GATC	3 cut(s)	12, 625, 671
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	2 cut(s)	111, 498
Eco47I	GGWCC	1 cut(s)	270
Eco47III	AGCGCT	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	496
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	2 cut(s)	111, 498
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	4 cut(s)	326, 337, 464, 595
FatI	CATG	4 cut(s)	322, 333, 460, 591
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	338, 549, 552
FriOI	GRGCYC	2 cut(s)	111, 498
Fsp4HI	GCNGC	3 cut(s)	338, 549, 552
FspBI	CTAG	5 cut(s)	24, 315, 411, 452, 543
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	3 cut(s)	338, 549, 552
GsaI	CCCAGC	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	122, 201
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	4 cut(s)	326, 337, 464, 595
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	215, 539
HphI	GGTGA	3 cut(s)	16, 573, 632
Hpy166II	GTNNAC	5 cut(s)	128, 226, 273, 304, 355
Hpy188I	TCNGA	2 cut(s)	471, 713
Hpy188III	TCNNGA	5 cut(s)	16, 115, 461, 499, 592
Hpy8I	GTNNAC	5 cut(s)	128, 226, 273, 304, 355
Hpy99I	CGWCG	2 cut(s)	102, 227
HpyAV	CCTTC	2 cut(s)	112, 472
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	5 cut(s)	135, 158, 179, 337, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 334, 557
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	4 cut(s)	326, 337, 464, 595
HspAI	GCGC	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	12, 625, 671
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	3 cut(s)	349, 535, 538
MaeI	CTAG	5 cut(s)	24, 315, 411, 452, 543
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	82, 620
MalI	GATC	3 cut(s)	14, 627, 673
MboI	GATC	3 cut(s)	12, 625, 671
MboII	GAAGA	5 cut(s)	22, 103, 160, 561, 620
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	2 cut(s)	111, 498
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	4 cut(s)	73, 256, 562, 648
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	5 cut(s)	202, 292, 358, 439, 484
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	3 cut(s)	330, 603, 651
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	33, 334, 557
NdeII	GATC	3 cut(s)	12, 625, 671
NlaIII	CATG	4 cut(s)	326, 337, 464, 595
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	82, 620
NspI	RCATGY	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	639
PagI	TCATGA	2 cut(s)	460, 591
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	339, 550, 553
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PshBI	ATTAAT	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	671
PvuII	CAGCTG	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	330, 603, 651
SatI	GCNGC	3 cut(s)	338, 549, 552
Sau3AI	GATC	3 cut(s)	12, 625, 671
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	111, 498
SfuI	TTCGAA	1 cut(s)	639
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	4 cut(s)	73, 256, 562, 648
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	5 cut(s)	24, 315, 411, 452, 543
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	28
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	3 cut(s)	225, 241, 639
TasI	AATT	4 cut(s)	73, 256, 562, 648
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	330, 603, 651
Tru9I	TTAA	3 cut(s)	330, 603, 651
TscAI	CASTG	2 cut(s)	130, 428
TseFI	GTSAC	2 cut(s)	82, 620
TseI	GCWGC	3 cut(s)	337, 548, 551
Tsp45I	GTSAC	2 cut(s)	82, 620
TspDTI	ATGAA	6 cut(s)	23, 449, 474, 561, 580, 611
TspRI	CASTG	2 cut(s)	130, 428
VpaK11BI	GGWCC	1 cut(s)	270
VspI	ATTAAT	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	27
XceI	RCATGY	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	5 cut(s)	24, 315, 411, 452, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.