Rh2AG409200
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002891
Physical Location & Seq
Reverse (-)
60822611 .. 60824175
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG409200.1

Sequence Viewer

Length: 363 bp
ATGCAGCTAACACAGACTCAAGGTCACTTGGAGGCTGAAAAACAGCGAGGAGAAGCACTTGACAAGCTGAGTGAAGACAGCGAGAGATCAAGCCATTGTTGGTGGGAAAACTCCATTGAGGAACTTGGATTGGATGAGCTTCAGACATTGAAGGCTGCGTTGGAGGAGCTCAAGAAGAATGTGACTGAAGAAGTCCACAAAATGAATGACCCTTGCAATTCTTCAGTACCATTCTTTATGATGAATGGAATTCGACTTGATCATCGTCTTTCCGAGAGAAAAGCCGTTGAGATTAATGTATCACATGGTTCCATGATCCCTCCTAGTGCCTATAGCTTTGGTTATGGACATGGCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

5.16

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 3 cut(s) 125, 207, 207
AfaI GTAC 1 cut(s) 228
AgsI TTSAA 1 cut(s) 151
AhdI GACNNNNNGTC 1 cut(s) 21
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 5 cut(s) 7, 67, 139, 169, 336
AluI AGCT 5 cut(s) 7, 67, 139, 169, 336
Alw21I GWGCWC 1 cut(s) 171
AlwI GGATC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 4, 155
ApoI RAATTY 1 cut(s) 249
AseI ATTAAT 1 cut(s) 294
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 16, 142
BceAI ACGGC 1 cut(s) 269
BclI TGATCA 1 cut(s) 259
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 331
BisI GCNGC 2 cut(s) 5, 156
BlsI GCNGC 2 cut(s) 6, 157
BmeRI GACNNNNNGTC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 155
BseGI GGATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 63, 179
BseXI GCAGC 2 cut(s) 16, 142
BsiHKAI GWGCWC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 3 cut(s) 86, 259, 315
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 310
BspPI GGATC 1 cut(s) 310
BssMI GATC 3 cut(s) 86, 259, 315
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 3 cut(s) 89, 262, 318
BstMBI GATC 3 cut(s) 86, 259, 315
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 16, 142
BstV2I GAAGAC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 139
Csp6I GTAC 1 cut(s) 227
CviAII CATG 3 cut(s) 305, 313, 350
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 68
DpnI GATC 3 cut(s) 88, 261, 317
DpnII GATC 3 cut(s) 86, 259, 315
DriI GACNNNNNGTC 1 cut(s) 21
Eam1105I GACNNNNNGTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 3 cut(s) 125, 207, 207
EcoICRI GAGCTC 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 3 cut(s) 308, 316, 353
FaiI YATR 6 cut(s) 239, 306, 314, 333, 345, 351
FatI CATG 3 cut(s) 304, 312, 349
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 5, 156
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 5, 156
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 5, 156
Hin1II CATG 3 cut(s) 308, 316, 353
HinfI GANTC 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 3 cut(s) 144, 274, 362
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 4, 216
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 3 cut(s) 308, 316, 353
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 3 cut(s) 86, 259, 315
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 2 cut(s) 16, 142
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 23, 181
MalI GATC 3 cut(s) 88, 261, 317
MboI GATC 3 cut(s) 86, 259, 315
MboII GAAGA 4 cut(s) 86, 187, 200, 213
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 2 cut(s) 217, 249
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 25, 41, 112, 157, 330
MseI TTAA 1 cut(s) 294
NdeII GATC 3 cut(s) 86, 259, 315
NlaIII CATG 3 cut(s) 308, 316, 353
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 23, 181
PkrI GCNGC 2 cut(s) 6, 157
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 310
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 5, 156
Sau3AI GATC 3 cut(s) 86, 259, 315
SchI GAGTC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 171
SetI ASST 6 cut(s) 9, 25, 69, 141, 171, 338
SfcI CTRYAG 1 cut(s) 331
SmlI CTYRAG 2 cut(s) 18, 170
SmoI CTYRAG 2 cut(s) 18, 170
Sse9I AATT 2 cut(s) 217, 249
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 171
TaqI TCGA 1 cut(s) 253
TasI AATT 2 cut(s) 217, 249
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseFI GTSAC 2 cut(s) 23, 181
TseI GCWGC 2 cut(s) 4, 155
Tsp45I GTSAC 2 cut(s) 23, 181
TspDTI ATGAA 2 cut(s) 218, 257
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 249
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.