RLG00000019828
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002891
Physical Location & Seq
Reverse (-)
57208733 .. 57209410
678 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019828

Sequence Viewer

Length: 678 bp
ATGGCGATGAAGAGCAAAAAGCCTAGCCAGGGTCGCCAAAAGATTGTGATTGCCAAAATACCAAAGAGAAGTAACTTACAAGTCACATTCTCGAAACGTTGTGCAGGACTCTTCAAAAAGGCTAGTGAGCTCTGCACACTCTGTGGAGTTGAGATTGTGATCATAGTCTTTTCTCCGGCTAACAAGCCGTTCTCTTTTGGCCATCCTAGTGTTGAGAGCCTCATCGGCCGCTTTCTTACTCCAAGCCATTTATCATTTTCCAGTAGTACTCAACAAGCTCAGTACTGCAGGGAGGTTAGTGTTGAACATAAGCTCAATATGCAGCTAACACGGGCTCAAGGTCACTTGGAGGCTGAGAAACAGCGAGGAGAAGCACTTGACAAGCTTAGTGAAGACAGCGACAGATCAAGCCCTTGTTGGTGGGAAAACTCCATTGAGGAACTTGGATTGGATGAGCTTCAGACATTGAAGGCTGCGTTGGAGGAGCTCAAGAAGAATGTGACTAAAGAAGTCCACAAAATGAATGACCCTTACAATTCTTCAGTACCATTTATGATGAATGGTATTCGACTTGATCATCGTCTTTCTGAGAGAAAAGCCGTTGAGATTAATGTATCACATGGTTCCATGATCCCTCCTAGTGCCTATAGCTTTGGTTATGGACATGGCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

226

Amino Acids

25.26

Weight (kDa)

9.06

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 19 - 66 2.3e-23 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AclI AACGTT 1 cut(s) 97
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 2 cut(s) 199, 226
AcuI CTGAAG 2 cut(s) 443, 525
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 3 cut(s) 268, 284, 546
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 3 cut(s) 115, 305, 469
AjnI CCWGG 1 cut(s) 27
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 8 cut(s) 130, 278, 313, 325, 385, 457, 487, 651
AluI AGCT 8 cut(s) 130, 278, 313, 325, 385, 457, 487, 651
Alw21I GWGCWC 2 cut(s) 132, 489
AlwI GGATC 1 cut(s) 625
AoxI GGCC 2 cut(s) 199, 226
ApeKI GCWGC 2 cut(s) 322, 473
AseI ATTAAT 1 cut(s) 609
BalI TGGCCA 1 cut(s) 201
BanII GRGCYC 3 cut(s) 132, 337, 489
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 132, 489
BbvI GCAGC 2 cut(s) 334, 460
BccI CCATC 1 cut(s) 210
BceAI ACGGC 2 cut(s) 172, 584
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 2 cut(s) 159, 574
BfaI CTAG 4 cut(s) 24, 123, 207, 639
BfmI CTRYAG 2 cut(s) 286, 646
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 3 cut(s) 229, 323, 474
BlsI GCNGC 3 cut(s) 230, 324, 475
BmcAI AGTACT 2 cut(s) 268, 284
Bme1390I CCNGG 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 399
BpuEI CTTGAG 2 cut(s) 321, 473
BsaBI GATNNNNATC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 261
Bse8I GATNNNNATC 1 cut(s) 158
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 202, 457
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 3 cut(s) 293, 345, 579
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 2 cut(s) 381, 497
BseX3I CGGCCG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 334, 460
BsgI GTGCAG 2 cut(s) 118, 123
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 201, 228
BsiEI CGRYCG 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 132, 489
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 2 cut(s) 201, 228
Bsp1286I GDGCHC 3 cut(s) 132, 337, 489
Bsp143I GATC 4 cut(s) 159, 404, 574, 630
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 201, 228
BspCNI CTCAG 3 cut(s) 292, 346, 580
BspLI GGNNCC 1 cut(s) 625
BspMAI CTGCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 625
BspQI GCTCTTC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 4 cut(s) 159, 404, 574, 630
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 5, 116
BstDEI CTNAG 4 cut(s) 279, 354, 386, 588
BstF5I GGATG 2 cut(s) 202, 457
BstKTI GATC 4 cut(s) 162, 407, 577, 633
BstMBI GATC 4 cut(s) 159, 404, 574, 630
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 3 cut(s) 33, 225, 319
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 2 cut(s) 286, 646
BstV1I GCAGC 2 cut(s) 334, 460
BstV2I GAAGAC 1 cut(s) 399
BstZI CGGCCG 1 cut(s) 226
BsuRI GGCC 2 cut(s) 201, 228
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 202, 457
Csp6I GTAC 3 cut(s) 267, 283, 545
CviAII CATG 3 cut(s) 620, 628, 665
CviQI GTAC 3 cut(s) 267, 283, 545
DdeI CTNAG 4 cut(s) 279, 354, 386, 588
DpnI GATC 4 cut(s) 161, 406, 576, 632
DpnII GATC 4 cut(s) 159, 404, 574, 630
DraIII CACNNNGTG 1 cut(s) 143
EaeI YGGCCR 2 cut(s) 199, 226
EagI CGGCCG 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 5, 116
EarI CTCTTC 2 cut(s) 5, 116
Ecl136II GAGCTC 2 cut(s) 130, 487
EclXI CGGCCG 1 cut(s) 226
Eco24I GRGCYC 3 cut(s) 132, 337, 489
Eco52I CGGCCG 1 cut(s) 226
Eco53kI GAGCTC 2 cut(s) 130, 487
Eco57I CTGAAG 2 cut(s) 443, 525
EcoICRI GAGCTC 2 cut(s) 130, 487
EcoRII CCWGG 1 cut(s) 27
EcoT38I GRGCYC 3 cut(s) 132, 337, 489
FaeI CATG 3 cut(s) 623, 631, 668
FaiI YATR 9 cut(s) 164, 309, 320, 554, 621, 629, 648, 660, 666
FatI CATG 3 cut(s) 619, 627, 664
FbaI TGATCA 2 cut(s) 159, 574
Fnu4HI GCNGC 3 cut(s) 229, 323, 474
FokI GGATG 2 cut(s) 189, 464
FriOI GRGCYC 3 cut(s) 132, 337, 489
Fsp4HI GCNGC 3 cut(s) 229, 323, 474
FspBI CTAG 4 cut(s) 24, 123, 207, 639
GluI GCNGC 3 cut(s) 229, 323, 474
HaeIII GGCC 2 cut(s) 201, 228
HapII CCGG 1 cut(s) 176
Hin1II CATG 3 cut(s) 623, 631, 668
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 1 cut(s) 108
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 462, 589, 677
Hpy188III TCNNGA 2 cut(s) 91, 490
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 1 cut(s) 463
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 104, 135, 288, 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 225, 319
HpyF3I CTNAG 4 cut(s) 279, 354, 386, 588
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 623, 631, 668
Ksp22I TGATCA 2 cut(s) 159, 574
Kzo9I GATC 4 cut(s) 159, 404, 574, 630
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 484
LpnPI CCDG 6 cut(s) 14, 41, 90, 189, 274, 274
Lsp1109I GCAGC 2 cut(s) 334, 460
MaeI CTAG 4 cut(s) 24, 123, 207, 639
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 4 cut(s) 71, 82, 341, 499
MalI GATC 4 cut(s) 161, 406, 576, 632
MboI GATC 4 cut(s) 159, 404, 574, 630
MboII GAAGA 5 cut(s) 22, 103, 404, 505, 531
MhlI GDGCHC 3 cut(s) 132, 337, 489
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 1 cut(s) 535
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 7 cut(s) 230, 286, 343, 359, 430, 475, 645
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MseI TTAA 1 cut(s) 609
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 33, 225, 319
NdeII GATC 4 cut(s) 159, 404, 574, 630
NlaIII CATG 3 cut(s) 623, 631, 668
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 3 cut(s) 82, 341, 499
PciSI GCTCTTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 230, 324, 475
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PshBI ATTAAT 1 cut(s) 609
Psp124BI GAGCTC 2 cut(s) 132, 489
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 625
PstI CTGCAG 1 cut(s) 290
RsaI GTAC 3 cut(s) 268, 284, 546
RsaNI GTAC 3 cut(s) 267, 283, 545
RseI CAYNNNNRTG 1 cut(s) 207
SacI GAGCTC 2 cut(s) 132, 489
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 3 cut(s) 229, 323, 474
Sau3AI GATC 4 cut(s) 159, 404, 574, 630
ScaI AGTACT 2 cut(s) 268, 284
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 3 cut(s) 132, 337, 489
SfcI CTRYAG 2 cut(s) 286, 646
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 336, 488
SmoI CTYRAG 2 cut(s) 336, 488
Sse9I AATT 1 cut(s) 535
SsiI CCGC 1 cut(s) 229
SspMI CTAG 4 cut(s) 24, 123, 207, 639
SstI GAGCTC 2 cut(s) 132, 489
StyD4I CCNGG 1 cut(s) 27
TaiI ACGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 92, 568
TasI AATT 1 cut(s) 535
TatI WGTACW 2 cut(s) 266, 282
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TseFI GTSAC 3 cut(s) 82, 341, 499
TseI GCWGC 2 cut(s) 322, 473
Tsp45I GTSAC 3 cut(s) 82, 341, 499
TspDTI ATGAA 3 cut(s) 23, 536, 572
VspI ATTAAT 1 cut(s) 609
XspI CTAG 4 cut(s) 24, 123, 207, 639
ZrmI AGTACT 2 cut(s) 268, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.