Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000545.1

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Reverse (-)

5520 .. 6200

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000545.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atggcgatgaagagcaaaaagcctaaccagggtcgccaaaagattgtgattgccaaaataccaaagagaagtaacttacaggtcacattctcgaaacgttgttcaggactcttcaaaaaggctagtgagctctgcacactctgtggagttgagattgtgatcatagtcttttctccggctaacaagccattctcttttggccatcctagtgttgagagcctcatcagccgctttcttactccaagccatttatcagtttcaaggagtactcaacatcctcagtactgcagggaggttagtgttgaacataagctcaatatgcagctaacacagactcaaggtcacttggaggcagaaaaacagcgaggagaagcacttgacaagctgagtgaagacagcgagagatcaagccattgttggtgggaaaactccattgaggaacttggattggatgagcttcagacattgaaggctgcgttggaggagctcaagaagaacgtgactgaagaagtccacaaaatgaatgacccttgcaattcttcagtaccattctttatgatgaatggaattcgacttgatcatcgtctttccgagagaaaagccgttgagattaatgtatcacatggttccatgatccctcctagtgcctatagctttggttatggacatggctttttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

226

Amino Acids

25.53

Weight (kDa)

8.71

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	229
AclI	AACGTT	1 cut(s)	97
AclWI	GGATC	1 cut(s)	628
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	3 cut(s)	443, 525, 525
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	268, 284, 546
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	115, 261, 305, 469
AhdI	GACNNNNNGTC	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	7 cut(s)	130, 313, 325, 385, 457, 487, 654
AluI	AGCT	7 cut(s)	130, 313, 325, 385, 457, 487, 654
Alw21I	GWGCWC	2 cut(s)	132, 489
AlwI	GGATC	1 cut(s)	628
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	322, 473
ApoI	RAATTY	1 cut(s)	567
AseI	ATTAAT	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	201
BanII	GRGCYC	2 cut(s)	132, 489
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	2 cut(s)	132, 489
BbvI	GCAGC	2 cut(s)	334, 460
BccI	CCATC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	2 cut(s)	159, 577
BfaI	CTAG	3 cut(s)	123, 207, 642
BfmI	CTRYAG	2 cut(s)	286, 649
BisI	GCNGC	3 cut(s)	229, 323, 474
BlsI	GCNGC	3 cut(s)	230, 324, 475
BmcAI	AGTACT	2 cut(s)	268, 284
Bme1390I	CCNGG	1 cut(s)	29
BmeRI	GACNNNNNGTC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	321, 473
BsaBI	GATNNNNATC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse8I	GATNNNNATC	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	3 cut(s)	202, 274, 457
BseJI	GATNNNNATC	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	293, 377
BseRI	GAGGAG	2 cut(s)	381, 497
BseXI	GCAGC	2 cut(s)	334, 460
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	2 cut(s)	132, 489
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	29
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	132, 489
Bsp143I	GATC	4 cut(s)	159, 404, 577, 633
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	292, 378
BspLI	GGNNCC	1 cut(s)	628
BspMAI	CTGCAG	1 cut(s)	290
BspPI	GGATC	1 cut(s)	628
BspQI	GCTCTTC	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	4 cut(s)	159, 404, 577, 633
Bst2UI	CCWGG	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	5, 116
BstDEI	CTNAG	2 cut(s)	279, 386
BstF5I	GGATG	3 cut(s)	202, 274, 457
BstKTI	GATC	4 cut(s)	162, 407, 580, 636
BstMBI	GATC	4 cut(s)	159, 404, 577, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 319
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	2 cut(s)	286, 649
BstV1I	GCAGC	2 cut(s)	334, 460
BstV2I	GAAGAC	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	202, 274, 457
Csp6I	GTAC	3 cut(s)	267, 283, 545
CviAII	CATG	3 cut(s)	623, 631, 668
CviQI	GTAC	3 cut(s)	267, 283, 545
DdeI	CTNAG	2 cut(s)	279, 386
DpnI	GATC	4 cut(s)	161, 406, 579, 635
DpnII	GATC	4 cut(s)	159, 404, 577, 633
DraIII	CACNNNGTG	1 cut(s)	143
DriI	GACNNNNNGTC	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	5, 116
Eam1105I	GACNNNNNGTC	1 cut(s)	339
EarI	CTCTTC	2 cut(s)	5, 116
Ecl136II	GAGCTC	2 cut(s)	130, 487
Eco24I	GRGCYC	2 cut(s)	132, 489
Eco53kI	GAGCTC	2 cut(s)	130, 487
Eco57I	CTGAAG	3 cut(s)	443, 525, 525
EcoICRI	GAGCTC	2 cut(s)	130, 487
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	132, 489
FaeI	CATG	3 cut(s)	626, 634, 671
FaiI	YATR	9 cut(s)	164, 309, 320, 557, 624, 632, 651, 663, 669
FatI	CATG	3 cut(s)	622, 630, 667
FbaI	TGATCA	2 cut(s)	159, 577
Fnu4HI	GCNGC	3 cut(s)	229, 323, 474
FokI	GGATG	3 cut(s)	189, 261, 464
FriOI	GRGCYC	2 cut(s)	132, 489
Fsp4HI	GCNGC	3 cut(s)	229, 323, 474
FspBI	CTAG	3 cut(s)	123, 207, 642
GluI	GCNGC	3 cut(s)	229, 323, 474
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	3 cut(s)	626, 634, 671
HinfI	GANTC	2 cut(s)	108, 334
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	462, 592, 680
Hpy188III	TCNNGA	3 cut(s)	91, 105, 490
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	1 cut(s)	463
HpyCH4IV	ACGT	2 cut(s)	97, 498
HpyCH4V	TGCA	4 cut(s)	135, 288, 322, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 319
HpyF3I	CTNAG	2 cut(s)	279, 386
HpySE526I	ACGT	2 cut(s)	97, 498
Hsp92II	CATG	3 cut(s)	626, 634, 671
Ksp22I	TGATCA	2 cut(s)	159, 577
Kzo9I	GATC	4 cut(s)	159, 404, 577, 633
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	6 cut(s)	14, 41, 65, 90, 189, 274
Lsp1109I	GCAGC	2 cut(s)	334, 460
MaeI	CTAG	3 cut(s)	123, 207, 642
MaeII	ACGT	2 cut(s)	97, 498
MaeIII	GTNAC	4 cut(s)	71, 82, 341, 499
MalI	GATC	4 cut(s)	161, 406, 579, 635
MboI	GATC	4 cut(s)	159, 404, 577, 633
MboII	GAAGA	6 cut(s)	22, 103, 404, 505, 518, 531
MhlI	GDGCHC	2 cut(s)	132, 489
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	2 cut(s)	535, 567
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	102, 328
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	8 cut(s)	230, 286, 288, 343, 359, 430, 475, 648
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	201
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	225, 319
NdeII	GATC	4 cut(s)	159, 404, 577, 633
NlaIII	CATG	3 cut(s)	626, 634, 671
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	3 cut(s)	82, 341, 499
PciSI	GCTCTTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	230, 324, 475
PleI	GAGTC	2 cut(s)	102, 328
PpsI	GAGTC	2 cut(s)	102, 328
PshBI	ATTAAT	1 cut(s)	612
Psp124BI	GAGCTC	2 cut(s)	132, 489
Psp1406I	AACGTT	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	628
PstI	CTGCAG	1 cut(s)	290
RsaI	GTAC	3 cut(s)	268, 284, 546
RsaNI	GTAC	3 cut(s)	267, 283, 545
RseI	CAYNNNNRTG	1 cut(s)	207
SacI	GAGCTC	2 cut(s)	132, 489
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	3 cut(s)	229, 323, 474
Sau3AI	GATC	4 cut(s)	159, 404, 577, 633
ScaI	AGTACT	2 cut(s)	268, 284
SchI	GAGTC	2 cut(s)	102, 328
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	132, 489
SfcI	CTRYAG	2 cut(s)	286, 649
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	336, 488
SmoI	CTYRAG	2 cut(s)	336, 488
Sse9I	AATT	2 cut(s)	535, 567
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	3 cut(s)	123, 207, 642
SstI	GAGCTC	2 cut(s)	132, 489
StyD4I	CCNGG	1 cut(s)	27
TaiI	ACGT	2 cut(s)	100, 501
TaqI	TCGA	2 cut(s)	92, 571
TasI	AATT	2 cut(s)	535, 567
TatI	WGTACW	2 cut(s)	266, 282
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TseFI	GTSAC	3 cut(s)	82, 341, 499
TseI	GCWGC	2 cut(s)	322, 473
Tsp45I	GTSAC	3 cut(s)	82, 341, 499
TspDTI	ATGAA	3 cut(s)	23, 536, 575
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	1 cut(s)	567
XspI	CTAG	3 cut(s)	123, 207, 642
ZrmI	AGTACT	2 cut(s)	268, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.