Rorug02G0359400
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002891
Physical Location & Seq
Reverse (-)
45453220 .. 45455072
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0359400.1

Sequence Viewer

Length: 237 bp
ATGAGCGGCGAGGCGAAAGCTGGAAAGGGGTTTAGAGCGAGGATGGAGCACTACTTGTACAGCGGCGACAAGAAGCACGTCATGGCCGGCATCGTTCTTATCAGCGCTGTCTTCGCCGTTCCTTGGTACCTCATGAACCGAGGGGCAAAGCATCAATCCCATCAAGATTACTTGGAAAAGGCTGATAAAGCAAGGAGCCAAAGACTGTCATCAAGTGGTGCATCTTCGGCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

78

Amino Acids

8.6

Weight (kDa)

9.99

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 2 cut(s) 6, 63
AcoI YGGCCR 1 cut(s) 84
AfaI GTAC 2 cut(s) 59, 128
AfeI AGCGCT 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 123
AjiI CACGTC 1 cut(s) 79
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw21I GWGCWC 1 cut(s) 51
Aor51HI AGCGCT 1 cut(s) 106
AoxI GGCC 1 cut(s) 84
Asp718I GGTACC 1 cut(s) 126
AspLEI GCGC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 51
BccI CCATC 2 cut(s) 37, 168
BceAI ACGGC 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 2 cut(s) 7, 64
BlsI GCNGC 2 cut(s) 8, 65
BmgBI CACGTC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 128, 197
BmsI GCATC 3 cut(s) 99, 160, 230
BpiI GAAGAC 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 122, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 122, 139
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 123
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 57
BspACI CCGC 2 cut(s) 6, 63
BspANI GGCC 1 cut(s) 86
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 128, 197
BspT107I GGYRCC 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 122, 139
BssT1I CCWWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 207
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstMWI GCNNNNNNNGC 3 cut(s) 113, 188, 227
BstV2I GAAGAC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 86
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 132
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 86
Csp6I GTAC 2 cut(s) 58, 127
CviAII CATG 2 cut(s) 82, 133
CviJI RGCY 5 cut(s) 20, 86, 182, 198, 230
CviKI_1 RGCY 5 cut(s) 20, 86, 182, 198, 230
CviQI GTAC 2 cut(s) 58, 127
EaeI YGGCCR 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 122
Eco47III AGCGCT 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 2 cut(s) 85, 136
FaiI YATR 2 cut(s) 83, 134
FatI CATG 2 cut(s) 81, 132
Fnu4HI GCNGC 2 cut(s) 7, 64
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 2 cut(s) 7, 64
GlaI GCGC 1 cut(s) 106
GluI GCNGC 2 cut(s) 7, 64
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 85, 136
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HpaII CCGG 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 133, 164
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 188, 227
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 85, 136
HspAI GCGC 1 cut(s) 105
KpnI GGTACC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 46, 195
LpnPI CCDG 2 cut(s) 6, 100
LweI GCATC 3 cut(s) 99, 160, 230
MaeII ACGT 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 6
MboII GAAGA 2 cut(s) 103, 216
MhlI GDGCHC 1 cut(s) 51
MnlI CCTC 4 cut(s) 4, 33, 134, 140
MroNI GCCGGC 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 113, 188, 227
NaeI GCCGGC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 2 cut(s) 85, 136
NlaIV GGNNCC 2 cut(s) 128, 197
PagI TCATGA 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 8, 65
PspN4I GGNNCC 2 cut(s) 128, 197
RsaI GTAC 2 cut(s) 59, 128
RsaNI GTAC 2 cut(s) 58, 127
SatI GCNGC 2 cut(s) 7, 64
SduI GDGCHC 1 cut(s) 51
SetI ASST 3 cut(s) 22, 81, 132
SfaNI GCATC 3 cut(s) 99, 160, 230
SsiI CCGC 2 cut(s) 6, 63
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 81
TatI WGTACW 1 cut(s) 57
TauI GCSGC 2 cut(s) 9, 66
TspDTI ATGAA 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.