Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Forward (+)

16514136 .. 16514852

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAGATCAAGAAACCTAGCCAAGGTCGCCAAAAGATTGCAATTGCCAAAATTGAAAAGAGAAGCAATTTACAAGTCACATTCTCAAAACGTCGTTCAGGGCTCTTCAAGAAGGCCAGTGAGCTATGCACACTTTGTGGGGTTGAGATTGCAATCATAGTCTTCTCTCCGGCCAACAAGCCCTTCTCCTTTGGCCACCCCGAGGTTGACTCCATCGTTGACCGCTTCATTGCTCGGAACCCTAACCCTAATCCCCTAGGCCTAGCAGGTTCTACAGACACCACTCAACAGCTTGCTGAGGCTCACAGGAATTCTAGTGTTCATGAGCTTAACATGCAGCTAACCCAGATTGTGAATCAGTTGGAGGCTGAGAAAAAACATGGAGAAGCACTTGATAAAATGAGCAAAGCTAGTCAAAACCAGTGTTGGTGGGAAATGCCAGTTGATGAACTTGGATTGCATGAGCTTCAGATATTGAAGGCCTCAGTTGAGGAAATCAAGAGGAATGTGAATAAACAAGCCAATAGGATTTTGATGGAGTCTAGTTACCCAAGTGCTGCTGCTAATTATTCTTCATCACCCTTGTCTATGATGAATAATATTGGTGGTTTAGTTCAACGTGATATCCATGATCATTATCGTTTCAAGAGCAAAAACCCTACTGATCAGATTGAACCTGCCTATAATTTTGGTTATGCTGGCCATGGTCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

239

Amino Acids

26.66

Weight (kDa)

9.18

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	257, 685
AciI	CCGC	1 cut(s)	223
AcoI	YGGCCR	3 cut(s)	171, 193, 700
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	452
AdeI	CACNNNGTG	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	23, 202
AgsI	TTSAA	6 cut(s)	56, 109, 478, 617, 646, 674
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	6 cut(s)	124, 292, 328, 340, 410, 466
AluI	AGCT	6 cut(s)	124, 292, 328, 340, 410, 466
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	6 cut(s)	114, 171, 193, 259, 480, 700
ApeKI	GCWGC	3 cut(s)	337, 557, 560
ApoI	RAATTY	1 cut(s)	310
AspA2I	CCTAGG	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	570
AvaI	CYCGRG	1 cut(s)	200
AvrII	CCTAGG	1 cut(s)	256
BalI	TGGCCA	2 cut(s)	195, 702
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	349, 544, 547
BccI	CCATC	2 cut(s)	221, 529
BclI	TGATCA	2 cut(s)	631, 664
BfaI	CTAG	6 cut(s)	18, 257, 263, 315, 411, 543
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	2 cut(s)	257, 685
BisI	GCNGC	3 cut(s)	338, 558, 561
BlnI	CCTAGG	1 cut(s)	256
BlsI	GCNGC	3 cut(s)	339, 559, 562
BmeT110I	CYCGRG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	154
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
Bpu10I	CCTNAGC	1 cut(s)	297
BsaBI	GATNNNNATC	2 cut(s)	152, 636
BsaJI	CCNNGG	4 cut(s)	22, 201, 256, 703
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 202
Bse1I	ACTGG	3 cut(s)	117, 421, 440
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	2 cut(s)	152, 636
BseDI	CCNNGG	4 cut(s)	22, 201, 256, 703
BseJI	GATNNNNATC	2 cut(s)	152, 636
BseLI	CCNNNNNNNGG	2 cut(s)	23, 202
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	288, 360, 498
BseNI	ACTGG	3 cut(s)	117, 421, 440
BseXI	GCAGC	3 cut(s)	349, 544, 547
BshFI	GGCC	6 cut(s)	116, 173, 195, 261, 482, 702
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	23, 202
BsnI	GGCC	6 cut(s)	116, 173, 195, 261, 482, 702
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	6, 631, 664
Bsp19I	CCATGG	1 cut(s)	703
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	6 cut(s)	116, 173, 195, 261, 482, 702
BspCNI	CTCAG	3 cut(s)	289, 361, 497
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	239
BspMI	ACCTGC	2 cut(s)	257, 685
BspQI	GCTCTTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	117, 421, 440
BssECI	CCNNGG	4 cut(s)	22, 201, 256, 703
BssMI	GATC	3 cut(s)	6, 631, 664
BssT1I	CCWWGG	3 cut(s)	22, 256, 703
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	294, 700
BstDEI	CTNAG	3 cut(s)	297, 369, 484
BstDSI	CCRYGG	1 cut(s)	703
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstKTI	GATC	3 cut(s)	9, 634, 667
BstMBI	GATC	3 cut(s)	6, 631, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 334
BstNSI	RCATGY	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	349, 544, 547
BstV2I	GAAGAC	1 cut(s)	154
BsuRI	GGCC	6 cut(s)	116, 173, 195, 261, 482, 702
BtgI	CCRYGG	1 cut(s)	703
BtsIMutI	CAGTG	2 cut(s)	124, 428
BveI	ACCTGC	2 cut(s)	257, 685
Cac8I	GCNNGC	2 cut(s)	294, 700
CciI	TCATGA	1 cut(s)	322
CviAII	CATG	6 cut(s)	323, 334, 380, 461, 629, 704
DdeI	CTNAG	3 cut(s)	297, 369, 484
DpnI	GATC	3 cut(s)	8, 633, 666
DpnII	GATC	3 cut(s)	6, 631, 664
DraIII	CACNNNGTG	1 cut(s)	137
EaeI	YGGCCR	3 cut(s)	171, 193, 700
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	3 cut(s)	22, 256, 703
Eco147I	AGGCCT	2 cut(s)	261, 482
Eco24I	GRGCYC	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	3 cut(s)	22, 256, 703
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	3 cut(s)	22, 256, 703
FaeI	CATG	6 cut(s)	326, 337, 383, 464, 632, 707
FatI	CATG	6 cut(s)	322, 333, 379, 460, 628, 703
FbaI	TGATCA	2 cut(s)	631, 664
Fnu4HI	GCNGC	3 cut(s)	338, 558, 561
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	338, 558, 561
FspBI	CTAG	6 cut(s)	18, 257, 263, 315, 411, 543
GluI	GCNGC	3 cut(s)	338, 558, 561
HaeIII	GGCC	6 cut(s)	116, 173, 195, 261, 482, 702
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	6 cut(s)	326, 337, 383, 464, 632, 707
HincII	GTYRAC	2 cut(s)	208, 220
HindII	GTYRAC	2 cut(s)	208, 220
HinfI	GANTC	3 cut(s)	209, 355, 539
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	570
Hpy166II	GTNNAC	2 cut(s)	208, 220
Hpy188I	TCNGA	3 cut(s)	237, 471, 669
Hpy188III	TCNNGA	5 cut(s)	10, 109, 323, 499, 646
Hpy8I	GTNNAC	2 cut(s)	208, 220
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	3 cut(s)	106, 193, 472
HpyCH4IV	ACGT	2 cut(s)	91, 619
HpyCH4V	TGCA	5 cut(s)	41, 129, 152, 337, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 334
HpyF3I	CTNAG	3 cut(s)	297, 369, 484
HpySE526I	ACGT	2 cut(s)	91, 619
Hsp92II	CATG	6 cut(s)	326, 337, 383, 464, 632, 707
Ksp22I	TGATCA	2 cut(s)	631, 664
Kzo9I	GATC	3 cut(s)	6, 631, 664
LguI	GCTCTTC	1 cut(s)	110
Lsp1109I	GCAGC	3 cut(s)	349, 544, 547
MaeI	CTAG	6 cut(s)	18, 257, 263, 315, 411, 543
MaeII	ACGT	2 cut(s)	91, 619
MaeIII	GTNAC	2 cut(s)	76, 545
MalI	GATC	3 cut(s)	8, 633, 666
MboI	GATC	3 cut(s)	6, 631, 664
MboII	GAAGA	4 cut(s)	16, 97, 154, 564
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	2 cut(s)	195, 702
MluCI	AATT	6 cut(s)	42, 51, 67, 310, 565, 685
MluNI	TGGCCA	2 cut(s)	195, 702
MlyI	GAGTC	2 cut(s)	203, 548
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	196, 292, 358, 484, 493, 495
Mox20I	TGGCCA	2 cut(s)	195, 702
MscI	TGGCCA	2 cut(s)	195, 702
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	2 cut(s)	195, 702
MspI	CCGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	27, 334
NcoI	CCATGG	1 cut(s)	703
NdeII	GATC	3 cut(s)	6, 631, 664
NlaIII	CATG	6 cut(s)	326, 337, 383, 464, 632, 707
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	337
PagI	TCATGA	1 cut(s)	322
PceI	AGGCCT	2 cut(s)	261, 482
PciSI	GCTCTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	339, 559, 562
PleI	GAGTC	2 cut(s)	203, 547
PpsI	GAGTC	2 cut(s)	203, 547
PspN4I	GGNNCC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	338, 558, 561
Sau3AI	GATC	3 cut(s)	6, 631, 664
SchI	GAGTC	2 cut(s)	203, 548
SduI	GDGCHC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	273
Sse9I	AATT	6 cut(s)	42, 51, 67, 310, 565, 685
SseBI	AGGCCT	2 cut(s)	261, 482
SsiI	CCGC	1 cut(s)	223
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	6 cut(s)	18, 257, 263, 315, 411, 543
StuI	AGGCCT	2 cut(s)	261, 482
StyI	CCWWGG	3 cut(s)	22, 256, 703
TaiI	ACGT	2 cut(s)	94, 622
TasI	AATT	6 cut(s)	42, 51, 67, 310, 565, 685
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	2 cut(s)	124, 428
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	3 cut(s)	337, 557, 560
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	6 cut(s)	17, 217, 311, 462, 564, 608
TspRI	CASTG	2 cut(s)	124, 428
XagI	CCTNNNNNAGG	1 cut(s)	21
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	337
XmaJI	CCTAGG	1 cut(s)	256
XspI	CTAG	6 cut(s)	18, 257, 263, 315, 411, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.