RchiOBHm_Chr2g0139721
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002891
Physical Location & Seq
Reverse (-)
57219711 .. 57220013
303 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51023

Sequence Viewer

Length: 303 bp
ATGGCAATGCAGATCAAGAAGCCGAGCCAGGGTCGCCAAAAGATTGCAATCACCAAAATTCCCAACAGGAGTAATTTACAAGTCACATTCTCGAAACGTTGTGCAGGACTGTTCAAGAAGGCTAGTGAGCTCTGCACACTTTGTGGAGTTGAGATTGCAATAGTAGTCTTTTCTCCTTCCAACAAACCCTTCTCTTTCGGCCATCCTAGCATTAAGACCCTCATCGGCCGCTTTCTTTCTCCAAGCCCTTCATCATTTCCCAGTAGTACGTACTCAACAAGCTCTGTACCCCAGGAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

100

Amino Acids

10.81

Weight (kDa)

10.2

Isoelectric Point (pI)

66.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 19 - 66 2.9e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AclI AACGTT 1 cut(s) 97
AcoI YGGCCR 2 cut(s) 199, 226
AcsI RAATTY 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 3 cut(s) 268, 272, 288
AfiI CCNNNNNNNGG 2 cut(s) 29, 296
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 2 cut(s) 27, 291
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 130, 282
AluI AGCT 2 cut(s) 130, 282
Alw21I GWGCWC 1 cut(s) 132
AoxI GGCC 2 cut(s) 199, 226
ApoI RAATTY 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 43
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 1 cut(s) 210
BciT130I CCWGG 2 cut(s) 29, 293
BfaI CTAG 3 cut(s) 123, 207, 301
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 29, 293
BmrFI CCNGG 2 cut(s) 29, 293
BmrI ACTGGG 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 28, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 296
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 47
BseBI CCWGG 2 cut(s) 29, 293
BseDI CCNNGG 2 cut(s) 28, 291
BseGI GGATG 1 cut(s) 202
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 29, 296
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 261
BseX3I CGGCCG 1 cut(s) 226
BsgI GTGCAG 2 cut(s) 118, 123
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 201, 228
BsiEI CGRYCG 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 29, 296
BsnI GGCC 2 cut(s) 201, 228
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 201, 228
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 28, 291
BssMI GATC 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 29, 293
Bst4CI ACNGT 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 270
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 33, 207
BstNI CCWGG 2 cut(s) 29, 293
BstSCI CCNGG 2 cut(s) 27, 291
BstSNI TACGTA 1 cut(s) 270
BstZI CGGCCG 1 cut(s) 226
BsuRI GGCC 2 cut(s) 201, 228
BtsCI GGATG 1 cut(s) 202
Csp6I GTAC 3 cut(s) 267, 271, 287
CviJI RGCY 9 cut(s) 22, 27, 122, 130, 201, 228, 246, 282, 300
CviKI_1 RGCY 9 cut(s) 22, 27, 122, 130, 201, 228, 246, 282, 300
CviQI GTAC 3 cut(s) 267, 271, 287
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
DraIII CACNNNGTG 1 cut(s) 143
EaeI YGGCCR 2 cut(s) 199, 226
EagI CGGCCG 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 226
Eco105I TACGTA 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 132
Eco52I CGGCCG 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 27, 291
EcoT38I GRGCYC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 3 cut(s) 123, 207, 301
GluI GCNGC 1 cut(s) 229
HaeIII GGCC 2 cut(s) 201, 228
HphI GGTGA 1 cut(s) 43
Hpy188III TCNNGA 3 cut(s) 16, 91, 115
HpyAV CCTTC 5 cut(s) 112, 186, 199, 258, 290
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 2 cut(s) 97, 269
HpyCH4V TGCA 5 cut(s) 10, 47, 104, 135, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 207
HpySE526I ACGT 2 cut(s) 97, 269
Kzo9I GATC 1 cut(s) 12
LpnPI CCDG 6 cut(s) 14, 41, 52, 90, 274, 278
MaeI CTAG 3 cut(s) 123, 207, 301
MaeII ACGT 2 cut(s) 97, 269
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 2 cut(s) 57, 73
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 1 cut(s) 230
MseI TTAA 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 29, 293
MvaI CCWGG 2 cut(s) 29, 293
MwoI GCNNNNNNNGC 2 cut(s) 33, 207
NdeII GATC 1 cut(s) 12
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 132
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 27, 291
PspGI CCWGG 2 cut(s) 27, 291
RsaI GTAC 3 cut(s) 268, 272, 288
RsaNI GTAC 3 cut(s) 267, 271, 287
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 1 cut(s) 12
ScrFI CCNGG 2 cut(s) 29, 293
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 100, 132, 272, 284
SnaBI TACGTA 1 cut(s) 270
Sse9I AATT 2 cut(s) 57, 73
SsiI CCGC 1 cut(s) 229
SspMI CTAG 3 cut(s) 123, 207, 301
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 27, 291
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 2 cut(s) 100, 272
TaqI TCGA 1 cut(s) 92
TasI AATT 2 cut(s) 57, 73
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 240
XapI RAATTY 1 cut(s) 57
XspI CTAG 3 cut(s) 123, 207, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.