Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Reverse (-)

3553578 .. 3567567

Gene Structure 13990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG037400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCACCTAACAAGGATTTCGAACCAAATCGAGACTGAGAGAAAGCGTGGTGAATCGCTTTATAAATTGAGCAACACCAGCAAGTGTTGGTGGGAAAACCCAGTTGATGAACTTGGACCGGATGAACTTCGAATACTTAAGGCTGCAATGGAGGAGCTCAAGAAGAATGTGAATGAACAAGCCAATAGGATTTGGATGGAGTCTAGTAATACTACTAGTATTGCTAATAATTCTTCATCATTCTTTATGATGAATAATGCTCATCATAAATTTGAGAACAGTCGCAGTAGTGATCAGGCAAACACTGATAAAAAACATACAGAGTTTCCGGACAAACATCATCAGAAATACGTAAAATGCATGAACAACAAAGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

126

Amino Acids

14.79

Weight (kDa)

7.82

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	269
AflII	CTTAAG	1 cut(s)	137
AhlI	ACTAGT	1 cut(s)	215
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	62
AsuII	TTCGAA	2 cut(s)	20, 130
AvaII	GGWCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	2 cut(s)	204, 216
BfrI	CTTAAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	95
BmuI	ACTGGG	1 cut(s)	95
Bpu14I	TTCGAA	2 cut(s)	20, 130
BpuEI	CTTGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	352
BsaWI	WCCGGW	2 cut(s)	118, 328
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	328
BseGI	GGATG	2 cut(s)	127, 201
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	119, 329
BsmAI	GTCTC	1 cut(s)	26
Bsp119I	TTCGAA	2 cut(s)	20, 130
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	28
BspEI	TCCGGA	1 cut(s)	328
BspT104I	TTCGAA	2 cut(s)	20, 130
BspTI	CTTAAG	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	281
BstAFI	CTTAAG	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	352
BstBI	TTCGAA	2 cut(s)	20, 130
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	127, 201
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstSNI	TACGTA	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	127, 201
BtsIMutI	CAGTG	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	116
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	4 cut(s)	143, 157, 182, 377
CviKI_1	RGCY	4 cut(s)	143, 157, 182, 377
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	157
Eco105I	TACGTA	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	1 cut(s)	364
FaiI	YATR	5 cut(s)	63, 248, 267, 318, 362
FatI	CATG	1 cut(s)	360
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	134, 208
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	204, 216
GluI	GCNGC	1 cut(s)	144
HapII	CCGG	2 cut(s)	119, 329
Hin1II	CATG	1 cut(s)	364
HinfI	GANTC	2 cut(s)	53, 200
HpaII	CCGG	2 cut(s)	119, 329
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	3 cut(s)	31, 160, 329
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	4, 146, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	364
Kpn2I	TCCGGA	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	91, 114, 132, 281, 342
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	204, 216
MaeII	ACGT	1 cut(s)	351
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	2 cut(s)	175, 225
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	65, 229, 269
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	1 cut(s)	145
Mph1103I	ATGCAT	1 cut(s)	362
MroI	TCCGGA	1 cut(s)	328
MseI	TTAA	1 cut(s)	138
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	2 cut(s)	119, 329
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	362
NspV	TTCGAA	2 cut(s)	20, 130
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	352
PsiI	TTATAA	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	116
PsrI	GAACNNNNNNTAC	2 cut(s)	117, 149
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	3 cut(s)	9, 159, 354
SfuI	TTCGAA	2 cut(s)	20, 130
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	137, 158
SmoI	CTYRAG	2 cut(s)	137, 158
SnaBI	TACGTA	1 cut(s)	352
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	3 cut(s)	65, 229, 269
SspMI	CTAG	2 cut(s)	204, 216
SstI	GAGCTC	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	3 cut(s)	20, 30, 130
TasI	AATT	3 cut(s)	65, 229, 269
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	6 cut(s)	123, 138, 189, 225, 266, 377
TspRI	CASTG	1 cut(s)	310
Vha464I	CTTAAG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	269
XspI	CTAG	2 cut(s)	204, 216
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.