Rorug04G0364200
MADS Family

Agamous-like MADS-box protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
53655584 .. 53659895
4312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0364200.1

Sequence Viewer

Length: 1320 bp
ATGGGTTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGACGAAGAGCCTGAGGAGCAGGACGTTGATATTGAGAACCAGTATTACAACTCCAAAGGTTTGGTTGAGACTGATCCAGAAGGAGCGCTTTCAGGATTTGAAGAAGTAATTCGCATGGAGCCTGACAAGGCTGAGTGGGGATTTAAATCTTTGAAGCAAACTGTGAAGATCTATTACCGTCTCAGGAGGTATAAAGAGATGATGGATTCATACAGGGAGATGTTGACATATATCAAATCAGCTGTAACACGGAATTACAGCGAAAAATGTATAAATAACATTATGGATTTTGTGTCCGGGTCAGCTAGTCAGAACTCTGGTCTCCTGCAAGATTTTTATCAGACCACTCTAAAGGCCCTTGAAGAGGCAAAGAATGAGAGGCTTTGGTTCAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGAGTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGATCAAAAGAAAGGAAGTCAACTTTTGGAGGTTTATGCAATTGAGATTCAAATGTACACTGAGACTAAAAATAACAAAAAGCTAAAGCAATTATACCAAAAAGCTCTTGCAATCAAGTCAGCAATACCTCATCCTAGGATCATGGGAATAATTCGTGAGTGTGGGGGTAAGATGCATATGACAGAGCGTCAGTGGGCAGAGGCCGCCACTGATTTTTTTGAAGCTTTCAAGAACTATGATGAAGCAGGGAACCAGAGGCGTATACAATGCTTGAAATATTTAGTTCTGGCTAATATGCTGATGCAGTCTGAGGTTAATCCATTTGATGGTCAAGAAGCAAAGCCGTATAAAAATGATCCTGAGATCTTGGCAATGACAAATCTGGTAGCAGCATATCAACGAAATGAGATATTGGAGTTCGAAAAAATTCTGAAGAGTAATAGGAAGACAATTATGGATGATCCATTCATTCGAAACTATATTGAAGATCTGTTGAAGAATATTAGAACACAAGTGCTGCTTAAACTAATCAAGCCGTACACACGAATCCGAATTCCCTTCATATCAAAGGAACTTAATGTCCCTGAGAAAGATGTTGAGCAGCTCTTGGTTTCACTAATTTTAGATAACAAAATCGATGGACATATTGATCAGGTGAACCAGCTCATGGAGCGCGGTGACAGGTCGAAGGGAAGGAAGAAGTATGCTGCCGTAGATAAATGGAACACACAGCTGAAGTCTCTTTCTCAAACTATTGGTAACCGAGTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

439

Amino Acids

51.43

Weight (kDa)

6.26

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 326 - 406 8.6e-24 PCI domain
COPS2_C PF25983 415 - 438 3.7e-12 COP9 signalosome complex subunit 2, C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 872, 1213
AccI GTMKAC 1 cut(s) 808
AccII CGCG 1 cut(s) 1221
AciI CCGC 2 cut(s) 750, 1221
AclWI GGATC 4 cut(s) 113, 692, 896, 1001
AcsI RAATTY 3 cut(s) 459, 972, 1098
AcuI CTGAAG 2 cut(s) 998, 1301
AfaI GTAC 4 cut(s) 41, 541, 602, 1085
AfeI AGCGCT 1 cut(s) 132
AfiI CCNNNNNNNGG 3 cut(s) 409, 872, 1213
AflII CTTAAG 1 cut(s) 446
AhdI GACNNNNNGTC 1 cut(s) 732
AloI GAACNNNNNNTCC 2 cut(s) 1110, 1142
AluBI AGCT 9 cut(s) 287, 350, 451, 628, 650, 770, 1150, 1210, 1279
AluI AGCT 9 cut(s) 287, 350, 451, 628, 650, 770, 1150, 1210, 1279
Alw26I GTCTC 5 cut(s) 107, 230, 371, 602, 1290
AlwI GGATC 4 cut(s) 113, 692, 896, 1001
Aor51HI AGCGCT 1 cut(s) 132
AoxI GGCC 2 cut(s) 399, 747
ApeKI GCWGC 4 cut(s) 935, 1063, 1147, 1253
ApoI RAATTY 3 cut(s) 459, 972, 1098
Asp700I GAANNNNTTC 2 cut(s) 153, 972
AspA2I CCTAGG 1 cut(s) 680
AspLEI GCGC 2 cut(s) 133, 1221
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 1213, 1235
AsuII TTCGAA 2 cut(s) 966, 1018
AvrII CCTAGG 1 cut(s) 680
AxyI CCTNAGG 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbsI GAAGAC 1 cut(s) 998
BbvI GCAGC 4 cut(s) 947, 1050, 1159, 1240
BccI CCATC 4 cut(s) 241, 530, 866, 1178
BceAI ACGGC 3 cut(s) 874, 1066, 1241
BclI TGATCA 2 cut(s) 547, 1195
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 5 cut(s) 107, 230, 371, 602, 1290
BfaI CTAG 2 cut(s) 351, 681
BfoI RGCGCY 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 446
BglII AGATCT 3 cut(s) 213, 909, 1033
BisI GCNGC 5 cut(s) 750, 936, 1064, 1148, 1254
BlnI CCTAGG 1 cut(s) 680
BlsI GCNGC 5 cut(s) 751, 937, 1065, 1149, 1255
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 343
BmeRI GACNNNNNGTC 1 cut(s) 732
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 3 cut(s) 7, 165, 797
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 2 cut(s) 708, 837
BpiI GAAGAC 1 cut(s) 998
Bpu14I TTCGAA 2 cut(s) 966, 1018
BpuMI CCSGG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 1182
BsaBI GATNNNNATC 2 cut(s) 190, 381
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 680
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 872, 1213
Bse1I ACTGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 924
Bse8I GATNNNNATC 2 cut(s) 190, 381
BseCI ATCGAT 1 cut(s) 1182
BseDI CCNNGG 1 cut(s) 680
BseGI GGATG 2 cut(s) 676, 1009
BseJI GATNNNNATC 2 cut(s) 190, 381
BseLI CCNNNNNNNGG 3 cut(s) 409, 872, 1213
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 7 cut(s) 48, 168, 241, 597, 846, 897, 1122
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 4 cut(s) 947, 1050, 1159, 1240
Bsh1236I CGCG 1 cut(s) 1221
BshFI GGCC 2 cut(s) 401, 749
BshVI ATCGAT 1 cut(s) 1182
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 1 cut(s) 1112
BslI CCNNNNNNNGG 3 cut(s) 409, 872, 1213
BsmAI GTCTC 5 cut(s) 107, 230, 371, 602, 1290
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 1112
BsnI GGCC 2 cut(s) 401, 749
Bso31I GGTCTC 1 cut(s) 371
Bsp119I TTCGAA 2 cut(s) 966, 1018
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 9 cut(s) 118, 213, 547, 684, 901, 909, 1006, 1033, 1195
BspACI CCGC 2 cut(s) 750, 1221
BspANI GGCC 2 cut(s) 401, 749
BspCNI CTCAG 7 cut(s) 49, 169, 240, 598, 847, 898, 1123
BspDI ATCGAT 1 cut(s) 1182
BspFNI CGCG 1 cut(s) 1221
BspLI GGNNCC 3 cut(s) 7, 165, 797
BspPI GGATC 4 cut(s) 113, 692, 896, 1001
BspQI GCTCTTC 1 cut(s) 45
BspT104I TTCGAA 2 cut(s) 966, 1018
BspTI CTTAAG 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 924
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 680
BssMI GATC 9 cut(s) 118, 213, 547, 684, 901, 909, 1006, 1033, 1195
BssNAI GTATAC 1 cut(s) 809
BssT1I CCWWGG 1 cut(s) 680
Bst1107I GTATAC 1 cut(s) 809
Bst4CI ACNGT 2 cut(s) 208, 224
Bst6I CTCTTC 3 cut(s) 45, 402, 974
BstAFI CTTAAG 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 600
BstBI TTCGAA 2 cut(s) 966, 1018
BstDEI CTNAG 7 cut(s) 57, 177, 227, 606, 855, 906, 1131
BstEII GGTNACC 1 cut(s) 1304
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 676, 1009
BstFNI CGCG 1 cut(s) 1221
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 2 cut(s) 133, 1221
BstKTI GATC 9 cut(s) 121, 216, 550, 687, 904, 912, 1009, 1036, 1198
BstMAI GTCTC 5 cut(s) 107, 230, 371, 602, 1290
BstMBI GATC 9 cut(s) 118, 213, 547, 684, 901, 909, 1006, 1033, 1195
BstMWI GCNNNNNNNGC 3 cut(s) 61, 749, 1216
BstPI GGTNACC 1 cut(s) 1304
BstSCI CCNGG 1 cut(s) 341
BstUI CGCG 1 cut(s) 1221
BstV1I GCAGC 4 cut(s) 947, 1050, 1159, 1240
BstV2I GAAGAC 1 cut(s) 998
BstX2I RGATCY 3 cut(s) 213, 909, 1033
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 3 cut(s) 213, 909, 1033
BstZ17I GTATAC 1 cut(s) 809
Bsu15I ATCGAT 1 cut(s) 1182
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 401, 749
BsuTUI ATCGAT 1 cut(s) 1182
BtsCI GGATG 2 cut(s) 676, 1009
BtsIMutI CAGTG 3 cut(s) 603, 743, 753
CfoI GCGC 2 cut(s) 133, 1221
Cfr13I GGNCC 1 cut(s) 400
ClaI ATCGAT 1 cut(s) 1182
CseI GACGC 1 cut(s) 722
Csp6I GTAC 4 cut(s) 40, 540, 601, 1084
CspCI CAANNNNNGTGG 2 cut(s) 503, 538
CviAII CATG 3 cut(s) 160, 688, 1213
CviQI GTAC 4 cut(s) 40, 540, 601, 1084
DdeI CTNAG 7 cut(s) 57, 177, 227, 606, 855, 906, 1131
DpnI GATC 9 cut(s) 120, 215, 549, 686, 903, 911, 1008, 1035, 1197
DpnII GATC 9 cut(s) 118, 213, 547, 684, 901, 909, 1006, 1033, 1195
DraI TTTAAA 1 cut(s) 190
DriI GACNNNNNGTC 1 cut(s) 732
Eam1104I CTCTTC 3 cut(s) 45, 402, 974
Eam1105I GACNNNNNGTC 1 cut(s) 732
EarI CTCTTC 3 cut(s) 45, 402, 974
Eco130I CCWWGG 1 cut(s) 680
Eco31I GGTCTC 1 cut(s) 371
Eco47III AGCGCT 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 998, 1301
Eco81I CCTNAGG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 1304
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 1304
EcoRI GAATTC 1 cut(s) 1098
EcoT14I CCWWGG 1 cut(s) 680
EcoT22I ATGCAT 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 680
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 3 cut(s) 163, 691, 1216
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 1050, 1082
FaqI GGGAC 1 cut(s) 1112
FatI CATG 3 cut(s) 159, 687, 1212
FauNDI CATATG 1 cut(s) 723
FbaI TGATCA 2 cut(s) 547, 1195
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 5 cut(s) 750, 936, 1064, 1148, 1254
FokI GGATG 2 cut(s) 663, 1016
Fsp4HI GCNGC 5 cut(s) 750, 936, 1064, 1148, 1254
FspBI CTAG 2 cut(s) 351, 681
GlaI GCGC 2 cut(s) 132, 1220
GluI GCNGC 5 cut(s) 750, 936, 1064, 1148, 1254
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 2 cut(s) 401, 749
HapII CCGG 1 cut(s) 342
HgaI GACGC 1 cut(s) 722
HhaI GCGC 2 cut(s) 133, 1221
Hin1II CATG 3 cut(s) 163, 691, 1216
Hin6I GCGC 2 cut(s) 131, 1219
HinP1I GCGC 2 cut(s) 131, 1219
HincII GTYRAC 2 cut(s) 270, 566
HindII GTYRAC 2 cut(s) 270, 566
HindIII AAGCTT 2 cut(s) 449, 768
HinfI GANTC 4 cut(s) 33, 251, 592, 1092
HpaII CCGG 1 cut(s) 342
HphI GGTGA 2 cut(s) 1213, 1235
Hpy166II GTNNAC 6 cut(s) 270, 566, 603, 809, 1086, 1204
Hpy188I TCNGA 7 cut(s) 10, 46, 357, 387, 856, 978, 1097
Hpy188III TCNNGA 8 cut(s) 122, 138, 229, 436, 701, 775, 878, 905
Hpy8I GTNNAC 6 cut(s) 270, 566, 603, 809, 1086, 1204
HpyAV CCTTC 5 cut(s) 119, 499, 1114, 1228, 1233
HpyCH4III ACNGT 2 cut(s) 208, 224
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 6 cut(s) 373, 456, 584, 656, 721, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 749, 1216
HpyF3I CTNAG 7 cut(s) 57, 177, 227, 606, 855, 906, 1131
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 3 cut(s) 163, 691, 1216
HspAI GCGC 2 cut(s) 131, 1219
Ksp22I TGATCA 2 cut(s) 547, 1195
Kzo9I GATC 9 cut(s) 118, 213, 547, 684, 901, 909, 1006, 1033, 1195
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 4 cut(s) 61, 128, 163, 1216
Lsp1109I GCAGC 4 cut(s) 947, 1050, 1159, 1240
LweI GCATC 2 cut(s) 708, 837
MaeI CTAG 2 cut(s) 351, 681
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 3 cut(s) 289, 1223, 1304
MalI GATC 9 cut(s) 120, 215, 549, 686, 903, 911, 1008, 1035, 1197
MboI GATC 9 cut(s) 118, 213, 547, 684, 901, 909, 1006, 1033, 1195
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 3 cut(s) 213, 909, 1033
Mph1103I ATGCAT 1 cut(s) 723
MroXI GAANNNNTTC 2 cut(s) 153, 972
MseI TTAA 5 cut(s) 189, 447, 861, 1068, 1122
MspA1I CMGCKG 2 cut(s) 287, 1279
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 343
MunI CAATTG 1 cut(s) 585
MvnI CGCG 1 cut(s) 1221
MwoI GCNNNNNNNGC 3 cut(s) 61, 749, 1216
NciI CCSGG 1 cut(s) 343
NdeI CATATG 1 cut(s) 723
NdeII GATC 9 cut(s) 118, 213, 547, 684, 901, 909, 1006, 1033, 1195
NlaIII CATG 3 cut(s) 163, 691, 1216
NlaIV GGNNCC 3 cut(s) 7, 165, 797
NmuCI GTSAC 1 cut(s) 1223
NsiI ATGCAT 1 cut(s) 723
NspV TTCGAA 2 cut(s) 966, 1018
PciSI GCTCTTC 1 cut(s) 45
PdmI GAANNNNTTC 2 cut(s) 153, 972
PfeI GAWTC 4 cut(s) 33, 251, 592, 1092
PflMI CCANNNNNTGG 2 cut(s) 872, 1213
PkrI GCNGC 5 cut(s) 751, 937, 1065, 1149, 1255
PspEI GGTNACC 1 cut(s) 1304
PspN4I GGNNCC 3 cut(s) 7, 165, 797
PspPI GGNCC 1 cut(s) 400
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
PsuI RGATCY 3 cut(s) 213, 909, 1033
PvuII CAGCTG 2 cut(s) 287, 1279
RsaI GTAC 4 cut(s) 41, 541, 602, 1085
RsaNI GTAC 4 cut(s) 40, 540, 601, 1084
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 5 cut(s) 189, 447, 861, 1068, 1122
SatI GCNGC 5 cut(s) 750, 936, 1064, 1148, 1254
Sau3AI GATC 9 cut(s) 118, 213, 547, 684, 901, 909, 1006, 1033, 1195
Sau96I GGNCC 1 cut(s) 400
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 343
SfaNI GCATC 2 cut(s) 708, 837
SfuI TTCGAA 2 cut(s) 966, 1018
SmiI ATTTAAAT 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SsiI CCGC 2 cut(s) 750, 1221
SspI AATATT 2 cut(s) 824, 1048
SspMI CTAG 2 cut(s) 351, 681
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 680
SwaI ATTTAAAT 1 cut(s) 190
TaaI ACNGT 2 cut(s) 208, 224
TaiI ACGT 1 cut(s) 72
TaqI TCGA 5 cut(s) 36, 966, 1018, 1182, 1232
TatI WGTACW 2 cut(s) 39, 600
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 4 cut(s) 33, 251, 592, 1092
Tru1I TTAA 5 cut(s) 189, 447, 861, 1068, 1122
Tru9I TTAA 5 cut(s) 189, 447, 861, 1068, 1122
TscAI CASTG 3 cut(s) 610, 743, 760
TseFI GTSAC 1 cut(s) 1223
TseI GCWGC 4 cut(s) 935, 1063, 1147, 1253
Tsp45I GTSAC 1 cut(s) 1223
TspDTI ATGAA 4 cut(s) 243, 801, 1003, 1096
TspGWI ACGGA 2 cut(s) 45, 310
TspRI CASTG 3 cut(s) 610, 743, 760
Van91I CCANNNNNTGG 2 cut(s) 872, 1213
Vha464I CTTAAG 1 cut(s) 446
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 3 cut(s) 459, 972, 1098
XmaJI CCTAGG 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 808
XmnI GAANNNNTTC 2 cut(s) 153, 972
XspI CTAG 2 cut(s) 351, 681
ZrmI AGTACT 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.