Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Reverse (-)

3486839 .. 3493066

Gene Structure 6228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG034500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCAGCTCATCGAGGCTCACCGCAACGCTAACGTTCGGGAGCTCAATGCCGAGCTGACTCAGGTCACCAACGAGCTGGAGGCCGAGAGGAAACGAGGAGAGGAGCTGAACCGGTTGCAGAGGGCGACTCAGGGGAATTTATGGTGGGAGTCTCCTATTGAGGAGATGGAGATGTCACATTGTGAGCAGCTGGGGGGGTCTCTAGAGGAGCTGAAGAAGGCTGTGGCTAAGCAGGTTGATAGGCTTCTGATTCAGACCACCACAAACCCTAATTCGTATTTCGCAGCAGACTCTTGCCAGCAGCTTGGTGAGGCTCACAAGAATGCTAGTGCTAATGAGCTCAACATGCACCTAACAAGGATTTCGAACCAAATCGAGACTGAGAGAAAGCGTGGTGAATCGCTTTATAAATTGAGCAACACCAGCAAGTGTTGGTGGGAAAACCCAGTTGATGAACTTGGACCGGATGAACTTCGAATACTTAAGGCTGCAATGGAGGAGCTCAAGAAGAATGTGAATGAACAAGCCAATAGGATTTGGATGGAGTCTAGTAATACTACTAGTATTGCTAATAATTCTTCATCATTCTTTATGATGAATAATGCTCATCATAAATTTGAGAACAGTCGCAGTAGTGATCAGGTTGGATCTGATTCCATTAATATTCCTAGAGCATATGATTTTGGTTTTGCTGGGAATATTGGTCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

237

Amino Acids

26.98

Weight (kDa)

5.28

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	223
AciI	CCGC	1 cut(s)	22
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	2 cut(s)	136, 614
AcuI	CTGAAG	1 cut(s)	233
AdeI	CACNNNGTG	1 cut(s)	182
AflII	CTTAAG	1 cut(s)	482
AgeI	ACCGGT	1 cut(s)	111
AhlI	ACTAGT	1 cut(s)	560
Alw21I	GWGCWC	3 cut(s)	45, 342, 504
Alw26I	GTCTC	3 cut(s)	156, 204, 371
AlwI	GGATC	1 cut(s)	655
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	5 cut(s)	4, 187, 284, 301, 488
ApoI	RAATTY	2 cut(s)	136, 614
AseI	ATTAAT	1 cut(s)	660
AsiGI	ACCGGT	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	4 cut(s)	11, 58, 320, 407
AsuII	TTCGAA	2 cut(s)	365, 475
AvaII	GGWCC	1 cut(s)	461
BanII	GRGCYC	3 cut(s)	45, 342, 504
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	3 cut(s)	45, 342, 504
BbvI	GCAGC	5 cut(s)	16, 199, 296, 313, 475
BccI	CCATC	2 cut(s)	160, 535
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	3 cut(s)	156, 204, 371
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	5 cut(s)	203, 327, 549, 561, 669
BfrI	CTTAAG	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	5 cut(s)	5, 188, 285, 302, 489
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	5 cut(s)	6, 189, 286, 303, 490
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmrI	ACTGGG	1 cut(s)	440
BmuI	ACTGGG	1 cut(s)	440
BoxI	GACNNNNGTC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	698
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
BpmI	CTGGAG	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	2 cut(s)	365, 475
BpuEI	CTTGAG	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	204
BsaWI	WCCGGW	2 cut(s)	111, 463
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	498
BseGI	GGATG	2 cut(s)	472, 546
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	3 cut(s)	74, 143, 372
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	5 cut(s)	111, 116, 176, 221, 512
BseXI	GCAGC	5 cut(s)	16, 199, 296, 313, 475
BseYI	CCCAGC	2 cut(s)	190, 692
BshFI	GGCC	1 cut(s)	83
BshTI	ACCGGT	1 cut(s)	111
BsiHKAI	GWGCWC	3 cut(s)	45, 342, 504
BsiSI	CCGG	2 cut(s)	112, 464
BsmAI	GTCTC	3 cut(s)	156, 204, 371
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	204
Bsp119I	TTCGAA	2 cut(s)	365, 475
Bsp1286I	GDGCHC	3 cut(s)	45, 342, 504
Bsp143I	GATC	2 cut(s)	637, 647
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	3 cut(s)	73, 142, 373
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	655
BspT104I	TTCGAA	2 cut(s)	365, 475
BspTI	CTTAAG	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	446
BssAI	RCCGGY	1 cut(s)	111
BssMI	GATC	2 cut(s)	637, 647
Bst4CI	ACNGT	1 cut(s)	626
BstAFI	CTTAAG	1 cut(s)	482
BstBI	TTCGAA	2 cut(s)	365, 475
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	4 cut(s)	60, 129, 228, 381
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	472, 546
BstKTI	GATC	2 cut(s)	640, 650
BstMAI	GTCTC	3 cut(s)	156, 204, 371
BstMBI	GATC	2 cut(s)	637, 647
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 423
BstNSI	RCATGY	1 cut(s)	349
BstPAI	GACNNNNGTC	1 cut(s)	62
BstPI	GGTNACC	1 cut(s)	64
BstV1I	GCAGC	5 cut(s)	16, 199, 296, 313, 475
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	1 cut(s)	647
BstXI	CCANNNNNNTGG	2 cut(s)	76, 305
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	472, 546
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	461
CspAI	ACCGGT	1 cut(s)	111
CviAII	CATG	1 cut(s)	346
DdeI	CTNAG	4 cut(s)	60, 129, 228, 381
DpnI	GATC	2 cut(s)	639, 649
DpnII	GATC	2 cut(s)	637, 647
DraIII	CACNNNGTG	1 cut(s)	182
Ecl136II	GAGCTC	3 cut(s)	43, 340, 502
Eco24I	GRGCYC	3 cut(s)	45, 342, 504
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	461
Eco53kI	GAGCTC	3 cut(s)	43, 340, 502
Eco57I	CTGAAG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	64
EcoICRI	GAGCTC	3 cut(s)	43, 340, 502
EcoO65I	GGTNACC	1 cut(s)	64
EcoT38I	GRGCYC	3 cut(s)	45, 342, 504
FaeI	CATG	1 cut(s)	349
FaiI	YATR	7 cut(s)	142, 347, 408, 593, 612, 676, 678
FatI	CATG	1 cut(s)	345
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	5 cut(s)	5, 188, 285, 302, 489
FokI	GGATG	2 cut(s)	479, 553
FriOI	GRGCYC	3 cut(s)	45, 342, 504
Fsp4HI	GCNGC	5 cut(s)	5, 188, 285, 302, 489
FspBI	CTAG	5 cut(s)	203, 327, 549, 561, 669
GluI	GCNGC	5 cut(s)	5, 188, 285, 302, 489
GsaI	CCCAGC	2 cut(s)	194, 696
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	2 cut(s)	112, 464
Hin1II	CATG	1 cut(s)	349
HinfI	GANTC	8 cut(s)	58, 127, 149, 250, 290, 398, 545, 653
HpaII	CCGG	2 cut(s)	112, 464
HphI	GGTGA	4 cut(s)	11, 58, 320, 407
Hpy188I	TCNGA	4 cut(s)	249, 255, 652, 713
Hpy188III	TCNNGA	4 cut(s)	38, 203, 376, 505
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	4, 118, 349, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 423
HpyF3I	CTNAG	4 cut(s)	60, 129, 228, 381
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	2 cut(s)	637, 647
LmnI	GCTCC	4 cut(s)	40, 103, 208, 499
Lsp1109I	GCAGC	5 cut(s)	16, 199, 296, 313, 475
MaeI	CTAG	5 cut(s)	203, 327, 549, 561, 669
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	64, 174
MalI	GATC	2 cut(s)	639, 649
MboI	GATC	2 cut(s)	637, 647
MboII	GAAGA	4 cut(s)	226, 520, 570, 698
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	3 cut(s)	45, 342, 504
MluCI	AATT	5 cut(s)	136, 271, 410, 574, 614
MlyI	GAGTC	5 cut(s)	52, 121, 158, 284, 554
MmeI	TCCRAC	1 cut(s)	625
MseI	TTAA	2 cut(s)	483, 660
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	190
MspCI	CTTAAG	1 cut(s)	482
MspI	CCGG	2 cut(s)	112, 464
Mva1269I	GAATGC	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	346, 423
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	2 cut(s)	637, 647
NlaIII	CATG	1 cut(s)	349
NmeAIII	GCCGAG	2 cut(s)	76, 109
NmuCI	GTSAC	2 cut(s)	64, 174
NspI	RCATGY	1 cut(s)	349
NspV	TTCGAA	2 cut(s)	365, 475
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	250, 398, 653
PinAI	ACCGGT	1 cut(s)	111
PkrI	GCNGC	5 cut(s)	6, 189, 286, 303, 490
PleI	GAGTC	5 cut(s)	52, 121, 157, 284, 553
PpsI	GAGTC	5 cut(s)	52, 121, 157, 284, 553
PshAI	GACNNNNGTC	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	660
PsiI	TTATAA	1 cut(s)	408
Psp124BI	GAGCTC	3 cut(s)	45, 342, 504
Psp1406I	AACGTT	1 cut(s)	33
PspEI	GGTNACC	1 cut(s)	64
PspFI	CCCAGC	2 cut(s)	190, 692
PspPI	GGNCC	1 cut(s)	461
PsrI	GAACNNNNNNTAC	2 cut(s)	462, 494
PsuI	RGATCY	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	321
SacI	GAGCTC	3 cut(s)	45, 342, 504
SaqAI	TTAA	2 cut(s)	483, 660
SatI	GCNGC	5 cut(s)	5, 188, 285, 302, 489
Sau3AI	GATC	2 cut(s)	637, 647
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	5 cut(s)	52, 121, 158, 284, 554
SduI	GDGCHC	3 cut(s)	45, 342, 504
SfuI	TTCGAA	2 cut(s)	365, 475
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	482, 503
SmoI	CTYRAG	2 cut(s)	482, 503
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	5 cut(s)	136, 271, 410, 574, 614
SsiI	CCGC	1 cut(s)	22
SspI	AATATT	2 cut(s)	664, 700
SspMI	CTAG	5 cut(s)	203, 327, 549, 561, 669
SstI	GAGCTC	3 cut(s)	45, 342, 504
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	4 cut(s)	12, 365, 375, 475
TasI	AATT	5 cut(s)	136, 271, 410, 574, 614
TfiI	GAWTC	3 cut(s)	250, 398, 653
Tru1I	TTAA	2 cut(s)	483, 660
Tru9I	TTAA	2 cut(s)	483, 660
TseFI	GTSAC	2 cut(s)	64, 174
TseI	GCWGC	5 cut(s)	4, 187, 284, 301, 488
Tsp45I	GTSAC	2 cut(s)	64, 174
TspDTI	ATGAA	5 cut(s)	468, 483, 534, 570, 611
Vha464I	CTTAAG	1 cut(s)	482
VpaK11BI	GGWCC	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	2 cut(s)	136, 614
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	5 cut(s)	203, 327, 549, 561, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.