Rmu_co8045644.1_g000001
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8045644.1
OG0002891
Physical Location & Seq
Reverse (-)
2 .. 497
496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8045644.1_g000001.1.cds

Sequence Viewer

Length: 496 bp
atggcgatgaagagcaaaaagcctaaccagggtcgccaaaagattgtgattgccaaaataccaaagagaagtaacttacaggtcacattctcgaaacgttgttcaggactcttcaaaaaggctagtgagctctgcacactctgtggagttgagattgtgatcatagtcttttctccggctaacaagccattctcttttggccatcctagtgttgagagcctcatcagccgctttcttactccaagccatttatcagtttcaaggagtactcaacatcctcagtactgcagggaggttagtgttgaacataagctcaatatgcagctaacacagactcaaggtcacttggaggcagaaaaacagcgaggagaagcacttgacaagctgagtgaagacagcgagagatcaagccattgttggtgggaaaactccattgaggaacttggattggatgagcttcagacattgaaggctgcgttggaggagctcaagaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

165

Amino Acids

18.66

Weight (kDa)

8.99

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AclI AACGTT 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 443
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 2 cut(s) 268, 284
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 4 cut(s) 115, 261, 305, 469
AhdI GACNNNNNGTC 1 cut(s) 339
AjnI CCWGG 1 cut(s) 27
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 6 cut(s) 130, 313, 325, 385, 457, 487
AluI AGCT 6 cut(s) 130, 313, 325, 385, 457, 487
Alw21I GWGCWC 2 cut(s) 132, 489
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 322, 473
BalI TGGCCA 1 cut(s) 201
BanII GRGCYC 2 cut(s) 132, 489
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 132, 489
BbvI GCAGC 2 cut(s) 334, 460
BccI CCATC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 159
BfaI CTAG 2 cut(s) 123, 207
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 3 cut(s) 229, 323, 474
BlsI GCNGC 3 cut(s) 230, 324, 475
BmcAI AGTACT 2 cut(s) 268, 284
Bme1390I CCNGG 1 cut(s) 29
BmeRI GACNNNNNGTC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 399
BpuEI CTTGAG 2 cut(s) 321, 473
BsaBI GATNNNNATC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 158
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 3 cut(s) 202, 274, 457
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 293, 377
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 2 cut(s) 334, 460
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 132, 489
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 132, 489
Bsp143I GATC 2 cut(s) 159, 404
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 292, 378
BspMAI CTGCAG 1 cut(s) 290
BspQI GCTCTTC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 2 cut(s) 159, 404
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 5, 116
BstDEI CTNAG 2 cut(s) 279, 386
BstF5I GGATG 3 cut(s) 202, 274, 457
BstKTI GATC 2 cut(s) 162, 407
BstMBI GATC 2 cut(s) 159, 404
BstMWI GCNNNNNNNGC 2 cut(s) 225, 319
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 334, 460
BstV2I GAAGAC 1 cut(s) 399
BsuRI GGCC 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 202, 274, 457
Csp6I GTAC 2 cut(s) 267, 283
CviQI GTAC 2 cut(s) 267, 283
DdeI CTNAG 2 cut(s) 279, 386
DpnI GATC 2 cut(s) 161, 406
DpnII GATC 2 cut(s) 159, 404
DraIII CACNNNGTG 1 cut(s) 143
DriI GACNNNNNGTC 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 5, 116
Eam1105I GACNNNNNGTC 1 cut(s) 339
EarI CTCTTC 2 cut(s) 5, 116
Ecl136II GAGCTC 2 cut(s) 130, 487
Eco24I GRGCYC 2 cut(s) 132, 489
Eco53kI GAGCTC 2 cut(s) 130, 487
Eco57I CTGAAG 1 cut(s) 443
EcoICRI GAGCTC 2 cut(s) 130, 487
EcoRII CCWGG 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 132, 489
FaiI YATR 3 cut(s) 164, 309, 320
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 229, 323, 474
FokI GGATG 3 cut(s) 189, 261, 464
FriOI GRGCYC 2 cut(s) 132, 489
Fsp4HI GCNGC 3 cut(s) 229, 323, 474
FspBI CTAG 2 cut(s) 123, 207
GluI GCNGC 3 cut(s) 229, 323, 474
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 176
HinfI GANTC 2 cut(s) 108, 334
HpaII CCGG 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 3 cut(s) 91, 105, 490
HpyAV CCTTC 1 cut(s) 463
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 135, 288, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 319
HpyF3I CTNAG 2 cut(s) 279, 386
HpySE526I ACGT 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 159, 404
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 484
LpnPI CCDG 6 cut(s) 14, 41, 65, 90, 189, 274
Lsp1109I GCAGC 2 cut(s) 334, 460
MaeI CTAG 2 cut(s) 123, 207
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 71, 82, 341
MalI GATC 2 cut(s) 161, 406
MboI GATC 2 cut(s) 159, 404
MboII GAAGA 3 cut(s) 22, 103, 404
MhlI GDGCHC 2 cut(s) 132, 489
MlsI TGGCCA 1 cut(s) 201
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 102, 328
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 7 cut(s) 230, 286, 288, 343, 359, 430, 475
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 225, 319
NdeII GATC 2 cut(s) 159, 404
NmuCI GTSAC 2 cut(s) 82, 341
PciSI GCTCTTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 230, 324, 475
PleI GAGTC 2 cut(s) 102, 328
PpsI GAGTC 2 cut(s) 102, 328
Psp124BI GAGCTC 2 cut(s) 132, 489
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PstI CTGCAG 1 cut(s) 290
RsaI GTAC 2 cut(s) 268, 284
RsaNI GTAC 2 cut(s) 267, 283
RseI CAYNNNNRTG 1 cut(s) 207
SacI GAGCTC 2 cut(s) 132, 489
SapI GCTCTTC 1 cut(s) 5
SatI GCNGC 3 cut(s) 229, 323, 474
Sau3AI GATC 2 cut(s) 159, 404
ScaI AGTACT 2 cut(s) 268, 284
SchI GAGTC 2 cut(s) 102, 328
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 2 cut(s) 132, 489
SfcI CTRYAG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 336, 488
SmoI CTYRAG 2 cut(s) 336, 488
SsiI CCGC 1 cut(s) 229
SspMI CTAG 2 cut(s) 123, 207
SstI GAGCTC 2 cut(s) 132, 489
StyD4I CCNGG 1 cut(s) 27
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 92
TatI WGTACW 2 cut(s) 266, 282
TauI GCSGC 1 cut(s) 231
TseFI GTSAC 2 cut(s) 82, 341
TseI GCWGC 2 cut(s) 322, 473
Tsp45I GTSAC 2 cut(s) 82, 341
TspDTI ATGAA 1 cut(s) 23
XspI CTAG 2 cut(s) 123, 207
ZrmI AGTACT 2 cut(s) 268, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.