Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Reverse (-)

3833895 .. 3834584

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22214

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATGATGAAGAAGACCAACAAATCTAGCCAAGGTCGCCAAAAGATTCCTATTGCTAAAATAGCCAAGAGAACCAATTTACAAGTCACATTCTCCAAGCGGCGTTCGGGGCTCTTCAAGAAGGCCAGCGAGCTCTGCACACTTTGCGGTGTTGAGGTTGCAATTGTAGTCTTCTCTCCGGCGAACAAGCCGTACTCCTTCGGCCACCCGGATGTTGACTCCCTCATTGACCGGTTTCTTGCTCGAAACCCTAATTTTAATATTTCCCTTGCAGACTCTTGTCAGCAGCTTGGTGAGGCTCACAAGAATGCTAGTGCTAATGAGCTCAACATGCACCTAACAAGGATTTCGAACCAAATCGAGACTGAGAGAAAACGTGGTGAATCGCTTGATAAATTGAGCAAAACCAGCGAGTGTTGGTGGGAAAACCCAGTTGATGAACTTGGACAGGATGAGCTTCGAATACTTGAGGCTGCAATGGAGGAGCTCAAGAAGAATGTGAATGAACAAGCCAATAGGATTTGGATGGAGTCTAGTAATACTACTAGTATTGCTTCATCATTCTTTATGATGAATAATGCTCATCATATATTTGAGAACAGTCGCAGTAGTGATCAGGTTGGATCTGATTCCATTAATATTCCTAGAGCATATGATTTTGGTTTTGCTGGGAATATTGGTCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

229

Amino Acids

25.79

Weight (kDa)

8.32

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	20 - 67	9.3e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	100, 147
AclWI	GGATC	1 cut(s)	631
AcoI	YGGCCR	1 cut(s)	202
AfaI	GTAC	1 cut(s)	194
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	118
AhlI	ACTAGT	1 cut(s)	545
AluBI	AGCT	5 cut(s)	133, 289, 325, 457, 487
AluI	AGCT	5 cut(s)	133, 289, 325, 457, 487
Alw21I	GWGCWC	3 cut(s)	135, 327, 489
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	631
AoxI	GGCC	2 cut(s)	123, 202
ApeKI	GCWGC	2 cut(s)	286, 473
AseI	ATTAAT	1 cut(s)	636
AsiGI	ACCGGT	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	305, 392
AsuII	TTCGAA	2 cut(s)	350, 460
BanII	GRGCYC	4 cut(s)	114, 135, 327, 489
BbsI	GAAGAC	2 cut(s)	20, 163
Bbv12I	GWGCWC	3 cut(s)	135, 327, 489
BbvI	GCAGC	2 cut(s)	298, 460
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	356
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	5 cut(s)	27, 312, 534, 546, 645
BisI	GCNGC	3 cut(s)	101, 287, 474
BlsI	GCNGC	3 cut(s)	102, 288, 475
Bme1390I	CCNGG	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	209
BmrI	ACTGGG	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	425
BoxI	GACNNNNGTC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	20, 163
Bpu14I	TTCGAA	2 cut(s)	350, 460
BpuEI	CTTGAG	2 cut(s)	473, 488
BpuMI	CCSGG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	3 cut(s)	217, 457, 531
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	298, 460
BseYI	CCCAGC	1 cut(s)	668
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	125, 204
BshTI	ACCGGT	1 cut(s)	231
BsiHKAI	GWGCWC	3 cut(s)	135, 327, 489
BsiSI	CCGG	3 cut(s)	179, 209, 232
BsmAI	GTCTC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	125, 204
Bsp119I	TTCGAA	2 cut(s)	350, 460
Bsp1286I	GDGCHC	4 cut(s)	114, 135, 327, 489
Bsp143I	GATC	2 cut(s)	613, 623
BspACI	CCGC	2 cut(s)	100, 147
BspANI	GGCC	2 cut(s)	125, 204
BspCNI	CTCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	631
BspQI	GCTCTTC	1 cut(s)	119
BspT104I	TTCGAA	2 cut(s)	350, 460
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	613, 623
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	602
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstBI	TTCGAA	2 cut(s)	350, 460
BstC8I	GCNNGC	2 cut(s)	127, 131
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	217, 457, 531
BstKTI	GATC	2 cut(s)	616, 626
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	2 cut(s)	613, 623
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 62, 109, 135, 144, 331, 408
BstNSI	RCATGY	1 cut(s)	334
BstPAI	GACNNNNGTC	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	298, 460
BstV2I	GAAGAC	2 cut(s)	20, 163
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuRI	GGCC	2 cut(s)	125, 204
BtsCI	GGATG	3 cut(s)	217, 457, 531
Cac8I	GCNNGC	2 cut(s)	127, 131
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	193
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	615, 625
DpnII	GATC	2 cut(s)	613, 623
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Ecl136II	GAGCTC	3 cut(s)	133, 325, 487
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	4 cut(s)	114, 135, 327, 489
Eco53kI	GAGCTC	3 cut(s)	133, 325, 487
EcoICRI	GAGCTC	3 cut(s)	133, 325, 487
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	4 cut(s)	114, 135, 327, 489
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	334
FaiI	YATR	6 cut(s)	332, 569, 588, 590, 652, 654
FatI	CATG	1 cut(s)	330
FauNDI	CATATG	1 cut(s)	652
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	101, 287, 474
FokI	GGATG	3 cut(s)	224, 464, 538
FriOI	GRGCYC	4 cut(s)	114, 135, 327, 489
Fsp4HI	GCNGC	3 cut(s)	101, 287, 474
FspBI	CTAG	5 cut(s)	27, 312, 534, 546, 645
GluI	GCNGC	3 cut(s)	101, 287, 474
GsaI	CCCAGC	1 cut(s)	672
HaeIII	GGCC	2 cut(s)	125, 204
HapII	CCGG	3 cut(s)	179, 209, 232
Hin1II	CATG	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	6 cut(s)	46, 218, 275, 383, 530, 629
HpaII	CCGG	3 cut(s)	179, 209, 232
HphI	GGTGA	2 cut(s)	305, 392
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	628, 689
Hpy188III	TCNNGA	3 cut(s)	118, 361, 490
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	115, 208
HpyCH4III	ACNGT	1 cut(s)	602
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	5 cut(s)	138, 161, 272, 334, 476
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 62, 109, 135, 144, 331, 408
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	613, 623
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	9 cut(s)	139, 192, 222, 245, 421, 434, 444, 602, 654
Lsp1109I	GCAGC	2 cut(s)	298, 460
MaeI	CTAG	5 cut(s)	27, 312, 534, 546, 645
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	615, 625
MboI	GATC	2 cut(s)	613, 623
MboII	GAAGA	5 cut(s)	22, 25, 106, 163, 505
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	4 cut(s)	114, 135, 327, 489
MluCI	AATT	4 cut(s)	76, 162, 253, 395
MlyI	GAGTC	3 cut(s)	212, 269, 539
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	5 cut(s)	148, 233, 289, 463, 475
MseI	TTAA	2 cut(s)	258, 636
MslI	CAYNNNNRTG	2 cut(s)	210, 306
MspI	CCGG	3 cut(s)	179, 209, 232
MspR9I	CCNGG	1 cut(s)	209
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	313
MwoI	GCNNNNNNNGC	7 cut(s)	36, 62, 109, 135, 144, 331, 408
NciI	CCSGG	1 cut(s)	209
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	2 cut(s)	613, 623
NlaIII	CATG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	334
NspV	TTCGAA	2 cut(s)	350, 460
PciSI	GCTCTTC	1 cut(s)	119
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	46, 383, 629
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	102, 288, 475
PleI	GAGTC	3 cut(s)	212, 269, 538
PpsI	GAGTC	3 cut(s)	212, 269, 538
PshAI	GACNNNNGTC	1 cut(s)	279
PshBI	ATTAAT	1 cut(s)	636
Psp124BI	GAGCTC	3 cut(s)	135, 327, 489
PspFI	CCCAGC	1 cut(s)	668
PsrI	GAACNNNNNNTAC	2 cut(s)	176, 208
PsuI	RGATCY	1 cut(s)	623
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	210, 306
SacI	GAGCTC	3 cut(s)	135, 327, 489
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	258, 636
SatI	GCNGC	3 cut(s)	101, 287, 474
Sau3AI	GATC	2 cut(s)	613, 623
SchI	GAGTC	3 cut(s)	212, 269, 539
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	4 cut(s)	114, 135, 327, 489
SfuI	TTCGAA	2 cut(s)	350, 460
SmiMI	CAYNNNNRTG	2 cut(s)	210, 306
SmlI	CTYRAG	2 cut(s)	467, 488
SmoI	CTYRAG	2 cut(s)	467, 488
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	4 cut(s)	76, 162, 253, 395
SsiI	CCGC	2 cut(s)	100, 147
SspI	AATATT	3 cut(s)	262, 640, 676
SspMI	CTAG	5 cut(s)	27, 312, 534, 546, 645
SstI	GAGCTC	3 cut(s)	135, 327, 489
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	602
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	4 cut(s)	244, 350, 360, 460
TasI	AATT	4 cut(s)	76, 162, 253, 395
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	3 cut(s)	46, 383, 629
Tru1I	TTAA	2 cut(s)	258, 636
Tru9I	TTAA	2 cut(s)	258, 636
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	286, 473
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	5 cut(s)	23, 453, 519, 546, 587
VspI	ATTAAT	1 cut(s)	636
XceI	RCATGY	1 cut(s)	334
XspI	CTAG	5 cut(s)	27, 312, 534, 546, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.