FvH4_6g32050
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002891
Physical Location & Seq
Reverse (-)
25154890 .. 25156195
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32050.t1

Sequence Viewer

Length: 726 bp
ATGAGGATTTGGGATGATATGCCTGAATTTATTCACACTGTTTCTTCTATGGCGATGAAGAGCAAGAAGCCTAGCCAGGGTCGCCAAAAGATTGCGATTGCCAAAATACCAAATAGAATCAACTTACAAGTCACATTCTCAAAGCGTTGTTCAGGACTCTTCAAAAAGGCTAGTGAGCTCTGCACACTCTGTGGAGTTGAGATTGTGATCGTAGTCTTTTCTCCGGCTAACAAGCCATTCTCTTTCGGCCATCCTAGTGTTGAGAGCCTCATCGACCGCTTTCTTACTTCAAACCCTTCATCATTTTCTAGTAGTACTCATCAAGCTCCATACTGCAGGGAGGTTAGTATTGAACATAAGCTCAATATGCAGCTAACGCAGATTCAAGGTCGCTTGGAGGCTGAGAAACAGCGAGGCGAAGCGCTTGACAAGATGAGTGAGGACAGCAAGAGATCAAGTCAGTGTTGGTGGGAAAACTCCATTGCGGAACTTGGATTGGATGAGCTCCAGATATTGAAGGCTGCAATGGAGGAGCTCAAGAAGAATGTGACTGAACAAGTTCACCAAATGAATGACCCTTGCAATTCTTCGGTACCATTCTTAATGATGAATGGTTTTCAAACTGATCATCATCTTTCTGATAGAAAAGCTGTTGAGAATGGATCACATGGTTCCATGATCCATCCTAGTGCCTATAGCTTTGGTTATGGACATGGCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

242

Amino Acids

27.16

Weight (kDa)

7.69

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 35 - 82 4.2e-23 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 592
AciI CCGC 2 cut(s) 277, 485
AclWI GGATC 2 cut(s) 670, 673
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 191
AfaI GTAC 2 cut(s) 316, 594
AfeI AGCGCT 1 cut(s) 423
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 6 cut(s) 163, 291, 353, 386, 517, 620
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 8 cut(s) 178, 326, 361, 373, 505, 535, 650, 699
AluI AGCT 8 cut(s) 178, 326, 361, 373, 505, 535, 650, 699
Alw21I GWGCWC 3 cut(s) 180, 507, 537
AlwI GGATC 2 cut(s) 670, 673
Aor51HI AGCGCT 1 cut(s) 423
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 370, 521
ApoI RAATTY 1 cut(s) 26
Asp700I GAANNNNTTC 2 cut(s) 30, 558
Asp718I GGTACC 1 cut(s) 592
AspLEI GCGC 1 cut(s) 424
AsuHPI GGTGA 1 cut(s) 554
BanI GGYRCC 1 cut(s) 592
BanII GRGCYC 3 cut(s) 180, 507, 537
Bbv12I GWGCWC 3 cut(s) 180, 507, 537
BbvI GCAGC 2 cut(s) 382, 508
BccI CCATC 2 cut(s) 258, 690
BciT130I CCWGG 1 cut(s) 77
BclI TGATCA 1 cut(s) 625
BfaI CTAG 5 cut(s) 72, 171, 255, 309, 687
BfmI CTRYAG 2 cut(s) 334, 694
BfoI RGCGCY 1 cut(s) 425
BisI GCNGC 2 cut(s) 371, 522
BlsI GCNGC 2 cut(s) 372, 523
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 594, 673
BmrFI CCNGG 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 521
BsaBI GATNNNNATC 2 cut(s) 206, 630
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse3DI GCAATG 2 cut(s) 480, 531
Bse8I GATNNNNATC 2 cut(s) 206, 630
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 4 cut(s) 19, 250, 505, 682
BseJI GATNNNNATC 2 cut(s) 206, 630
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 2 cut(s) 480, 531
BseMII CTCAG 1 cut(s) 393
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 2 cut(s) 382, 508
BsgI GTGCAG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 592
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 3 cut(s) 180, 507, 537
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 77
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 3 cut(s) 180, 507, 537
Bsp143I GATC 5 cut(s) 207, 452, 625, 662, 678
BspACI CCGC 2 cut(s) 277, 485
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 394
BspLI GGNNCC 2 cut(s) 594, 673
BspMAI CTGCAG 1 cut(s) 338
BspPI GGATC 2 cut(s) 670, 673
BspQI GCTCTTC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 592
BsrDI GCAATG 2 cut(s) 480, 531
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 5 cut(s) 207, 452, 625, 662, 678
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 2 cut(s) 53, 164
BstDEI CTNAG 1 cut(s) 402
BstF5I GGATG 4 cut(s) 19, 250, 505, 682
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 5 cut(s) 210, 455, 628, 665, 681
BstMBI GATC 5 cut(s) 207, 452, 625, 662, 678
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 81, 367, 376
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 2 cut(s) 334, 694
BstV1I GCAGC 2 cut(s) 382, 508
BsuRI GGCC 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 4 cut(s) 19, 250, 505, 682
BtsIMutI CAGTG 2 cut(s) 36, 467
CfoI GCGC 1 cut(s) 424
Csp6I GTAC 2 cut(s) 315, 593
CviAII CATG 3 cut(s) 668, 676, 713
CviQI GTAC 2 cut(s) 315, 593
DdeI CTNAG 1 cut(s) 402
DpnI GATC 5 cut(s) 209, 454, 627, 664, 680
DpnII GATC 5 cut(s) 207, 452, 625, 662, 678
DraIII CACNNNGTG 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 53, 164
EarI CTCTTC 2 cut(s) 53, 164
Ecl136II GAGCTC 3 cut(s) 178, 505, 535
Eco24I GRGCYC 3 cut(s) 180, 507, 537
Eco47III AGCGCT 1 cut(s) 423
Eco53kI GAGCTC 3 cut(s) 178, 505, 535
EcoICRI GAGCTC 3 cut(s) 178, 505, 535
EcoRII CCWGG 1 cut(s) 75
EcoT38I GRGCYC 3 cut(s) 180, 507, 537
FaeI CATG 3 cut(s) 671, 679, 716
FatI CATG 3 cut(s) 667, 675, 712
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 371, 522
FokI GGATG 4 cut(s) 26, 237, 512, 669
FriOI GRGCYC 3 cut(s) 180, 507, 537
Fsp4HI GCNGC 2 cut(s) 371, 522
FspBI CTAG 5 cut(s) 72, 171, 255, 309, 687
GlaI GCGC 1 cut(s) 423
GluI GCNGC 2 cut(s) 371, 522
GsuI CTGGAG 1 cut(s) 491
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 224
HhaI GCGC 1 cut(s) 424
Hin1II CATG 3 cut(s) 671, 679, 716
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 3 cut(s) 117, 156, 382
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 2 cut(s) 640, 725
Hpy188III TCNNGA 3 cut(s) 153, 508, 538
Hpy8I GTNNAC 1 cut(s) 562
HpyAV CCTTC 2 cut(s) 306, 511
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 5 cut(s) 183, 336, 370, 524, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 367, 376
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 3 cut(s) 671, 679, 716
HspAI GCGC 1 cut(s) 422
KpnI GGTACC 1 cut(s) 596
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 5 cut(s) 207, 452, 625, 662, 678
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 3 cut(s) 331, 510, 532
LpnPI CCDG 7 cut(s) 36, 62, 89, 138, 237, 322, 521
Lsp1109I GCAGC 2 cut(s) 382, 508
MaeI CTAG 5 cut(s) 72, 171, 255, 309, 687
MaeIII GTNAC 2 cut(s) 130, 547
MalI GATC 5 cut(s) 209, 454, 627, 664, 680
MboI GATC 5 cut(s) 207, 452, 625, 662, 678
MboII GAAGA 5 cut(s) 36, 70, 151, 553, 579
MhlI GDGCHC 3 cut(s) 180, 507, 537
MluCI AATT 2 cut(s) 26, 583
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 6 cut(s) 278, 334, 391, 407, 433, 523
MroXI GAANNNNTTC 2 cut(s) 30, 558
MseI TTAA 1 cut(s) 602
MslI CAYNNNNRTG 2 cut(s) 255, 687
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 3 cut(s) 81, 367, 376
NdeII GATC 5 cut(s) 207, 452, 625, 662, 678
NlaIII CATG 3 cut(s) 671, 679, 716
NlaIV GGNNCC 2 cut(s) 594, 673
NmuCI GTSAC 2 cut(s) 130, 547
PciSI GCTCTTC 1 cut(s) 53
PdmI GAANNNNTTC 2 cut(s) 30, 558
PfeI GAWTC 2 cut(s) 117, 382
PkrI GCNGC 2 cut(s) 372, 523
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Psp124BI GAGCTC 3 cut(s) 180, 507, 537
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 594, 673
PstI CTGCAG 1 cut(s) 338
RsaI GTAC 2 cut(s) 316, 594
RsaNI GTAC 2 cut(s) 315, 593
RseI CAYNNNNRTG 2 cut(s) 255, 687
SacI GAGCTC 3 cut(s) 180, 507, 537
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 2 cut(s) 371, 522
Sau3AI GATC 5 cut(s) 207, 452, 625, 662, 678
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 3 cut(s) 180, 507, 537
SfcI CTRYAG 2 cut(s) 334, 694
SmiMI CAYNNNNRTG 2 cut(s) 255, 687
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 2 cut(s) 26, 583
SsiI CCGC 2 cut(s) 277, 485
SspMI CTAG 5 cut(s) 72, 171, 255, 309, 687
SstI GAGCTC 3 cut(s) 180, 507, 537
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 273
TasI AATT 2 cut(s) 26, 583
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 2 cut(s) 117, 382
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TscAI CASTG 2 cut(s) 43, 467
TseFI GTSAC 2 cut(s) 130, 547
TseI GCWGC 2 cut(s) 370, 521
Tsp45I GTSAC 2 cut(s) 130, 547
TspDTI ATGAA 4 cut(s) 71, 288, 584, 623
TspRI CASTG 2 cut(s) 43, 467
XapI RAATTY 1 cut(s) 26
XmnI GAANNNNTTC 2 cut(s) 30, 558
XspI CTAG 5 cut(s) 72, 171, 255, 309, 687
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.