Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Forward (+)

62697420 .. 62698112

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015177

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAGAAGACCAACAAATCTAGCCAAGGTCGCCAAAAGATTCCTATTGCTAAAATAGCCAAGAGAACCAATTTACAAGTCACATTCTCCAAGCGGCGTTCAGGGCTCTTCAAGAAGGCCAGCGAGCTCTGCACACTGTGCGGTGTTGAGGTTGCAATTGTAGTCTTCTCTCCGGCGAACAAGCCCTACTCCTTCGGCCACCCGGAGGTTGACTCCCTCATTGACCGGTTTCTTGCTCGAAACCCTAATTTTAATATTTCCCTAGCAGACTCTTGTCAGCAGCTTGGTGAGGCTCACAAGAATGCTATTGCTAATGAGCTCAACATGCACCTAACAAGGATTTCGAACCAAATCGAGACTGAGAGAAAACGTGGTGAATCGCTTGATAAATTGAGCAAAACCAGCGAGTGTTGGTGGGAAAACCCAGCTGATGAACTTGGACTGGATGAGCTTCGAATACTTAAGGCTGCAATGGAGGAGCTCAAGAAGAATGTGAATGAACAAGCCAATAGGATTTGGATGGAGTCTAGTAATACTACTAGTATTGCTAATAATTCTTCATCATTCTTTATGATGAATAATGCTCAACATAAATTTGAGAACAGTCGCAGTAGTGATCAGGTTGGATCTGATTCCATTAATATTTCTAGAGCATATGATTTTGGTTTTGCTGGGAATATTGGTCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

231

Amino Acids

25.84

Weight (kDa)

9.03

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	18 - 65	9.3e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	94, 141
AclWI	GGATC	1 cut(s)	634
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	593
AdeI	CACNNNGTG	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflII	CTTAAG	1 cut(s)	461
AgeI	ACCGGT	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	112
AhlI	ACTAGT	1 cut(s)	539
AluBI	AGCT	6 cut(s)	127, 283, 319, 428, 451, 481
AluI	AGCT	6 cut(s)	127, 283, 319, 428, 451, 481
Alw21I	GWGCWC	3 cut(s)	129, 321, 483
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	634
AoxI	GGCC	2 cut(s)	117, 196
ApeKI	GCWGC	2 cut(s)	280, 467
ApoI	RAATTY	1 cut(s)	593
AseI	ATTAAT	1 cut(s)	639
AsiGI	ACCGGT	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	299, 386
AsuII	TTCGAA	2 cut(s)	344, 454
BanII	GRGCYC	4 cut(s)	108, 129, 321, 483
BbsI	GAAGAC	2 cut(s)	14, 157
Bbv12I	GWGCWC	3 cut(s)	129, 321, 483
BbvI	GCAGC	2 cut(s)	292, 454
BccI	CCATC	1 cut(s)	514
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	5 cut(s)	21, 263, 528, 540, 648
BfrI	CTTAAG	1 cut(s)	461
BisI	GCNGC	3 cut(s)	95, 281, 468
BlsI	GCNGC	3 cut(s)	96, 282, 469
Bme1390I	CCNGG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	203
BoxI	GACNNNNGTC	1 cut(s)	273
BpiI	GAAGAC	2 cut(s)	14, 157
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu14I	TTCGAA	2 cut(s)	344, 454
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	451, 525
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	292, 454
BseYI	CCCAGC	2 cut(s)	424, 671
BsgI	GTGCAG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	119, 198
BshTI	ACCGGT	1 cut(s)	225
BsiHKAI	GWGCWC	3 cut(s)	129, 321, 483
BsiSI	CCGG	3 cut(s)	173, 203, 226
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	119, 198
Bsp119I	TTCGAA	2 cut(s)	344, 454
Bsp1286I	GDGCHC	4 cut(s)	108, 129, 321, 483
Bsp143I	GATC	2 cut(s)	616, 626
BspACI	CCGC	2 cut(s)	94, 141
BspANI	GGCC	2 cut(s)	119, 198
BspCNI	CTCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	634
BspQI	GCTCTTC	1 cut(s)	113
BspT104I	TTCGAA	2 cut(s)	344, 454
BspTI	CTTAAG	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	616, 626
BssT1I	CCWWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	138, 605
Bst6I	CTCTTC	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstBI	TTCGAA	2 cut(s)	344, 454
BstC8I	GCNNGC	2 cut(s)	121, 125
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	451, 525
BstKTI	GATC	2 cut(s)	619, 629
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	616, 626
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 56, 103, 129, 138, 325, 402
BstNSI	RCATGY	1 cut(s)	328
BstPAI	GACNNNNGTC	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	292, 454
BstV2I	GAAGAC	2 cut(s)	14, 157
BstX2I	RGATCY	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	119, 198
BtsCI	GGATG	2 cut(s)	451, 525
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	121, 125
Cfr10I	RCCGGY	1 cut(s)	225
CspAI	ACCGGT	1 cut(s)	225
CviAII	CATG	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	618, 628
DpnII	GATC	2 cut(s)	616, 626
DraIII	CACNNNGTG	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	3 cut(s)	127, 319, 481
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	4 cut(s)	108, 129, 321, 483
Eco53kI	GAGCTC	3 cut(s)	127, 319, 481
EcoICRI	GAGCTC	3 cut(s)	127, 319, 481
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	4 cut(s)	108, 129, 321, 483
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	1 cut(s)	328
FaiI	YATR	5 cut(s)	326, 572, 591, 655, 657
FatI	CATG	1 cut(s)	324
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	95, 281, 468
FokI	GGATG	2 cut(s)	458, 532
FriOI	GRGCYC	4 cut(s)	108, 129, 321, 483
Fsp4HI	GCNGC	3 cut(s)	95, 281, 468
FspBI	CTAG	5 cut(s)	21, 263, 528, 540, 648
GluI	GCNGC	3 cut(s)	95, 281, 468
GsaI	CCCAGC	2 cut(s)	428, 675
HaeIII	GGCC	2 cut(s)	119, 198
HapII	CCGG	3 cut(s)	173, 203, 226
Hin1II	CATG	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	6 cut(s)	40, 212, 269, 377, 524, 632
HpaII	CCGG	3 cut(s)	173, 203, 226
HphI	GGTGA	2 cut(s)	299, 386
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	631, 692
Hpy188III	TCNNGA	4 cut(s)	112, 355, 484, 648
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	109, 202
HpyCH4III	ACNGT	2 cut(s)	138, 605
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	132, 155, 328, 470
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 56, 103, 129, 138, 325, 402
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	616, 626
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	2 cut(s)	292, 454
MaeI	CTAG	5 cut(s)	21, 263, 528, 540, 648
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	618, 628
MboI	GATC	2 cut(s)	616, 626
MboII	GAAGA	6 cut(s)	16, 19, 100, 157, 499, 549
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	626
MhlI	GDGCHC	4 cut(s)	108, 129, 321, 483
MluCI	AATT	6 cut(s)	70, 156, 247, 389, 553, 593
MlyI	GAGTC	3 cut(s)	206, 263, 533
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	5 cut(s)	142, 199, 227, 283, 469
MseI	TTAA	3 cut(s)	252, 462, 639
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	428
MspCI	CTTAAG	1 cut(s)	461
MspI	CCGG	3 cut(s)	173, 203, 226
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	7 cut(s)	30, 56, 103, 129, 138, 325, 402
NciI	CCSGG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	2 cut(s)	616, 626
NlaIII	CATG	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	328
NspV	TTCGAA	2 cut(s)	344, 454
PciSI	GCTCTTC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	40, 377, 632
PinAI	ACCGGT	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	96, 282, 469
PleI	GAGTC	3 cut(s)	206, 263, 532
PpsI	GAGTC	3 cut(s)	206, 263, 532
PshAI	GACNNNNGTC	1 cut(s)	273
PshBI	ATTAAT	1 cut(s)	639
Psp124BI	GAGCTC	3 cut(s)	129, 321, 483
PspFI	CCCAGC	2 cut(s)	424, 671
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
PsuI	RGATCY	1 cut(s)	626
PvuII	CAGCTG	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	3 cut(s)	129, 321, 483
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	252, 462, 639
SatI	GCNGC	3 cut(s)	95, 281, 468
Sau3AI	GATC	2 cut(s)	616, 626
SchI	GAGTC	3 cut(s)	206, 263, 533
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	4 cut(s)	108, 129, 321, 483
SfuI	TTCGAA	2 cut(s)	344, 454
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	461, 482
SmoI	CTYRAG	2 cut(s)	461, 482
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	6 cut(s)	70, 156, 247, 389, 553, 593
SsiI	CCGC	2 cut(s)	94, 141
SspI	AATATT	3 cut(s)	256, 643, 679
SspMI	CTAG	5 cut(s)	21, 263, 528, 540, 648
SstI	GAGCTC	3 cut(s)	129, 321, 483
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	138, 605
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	4 cut(s)	238, 344, 354, 454
TasI	AATT	6 cut(s)	70, 156, 247, 389, 553, 593
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	3 cut(s)	40, 377, 632
Tru1I	TTAA	3 cut(s)	252, 462, 639
Tru9I	TTAA	3 cut(s)	252, 462, 639
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	280, 467
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	5 cut(s)	17, 447, 513, 549, 590
TspRI	CASTG	1 cut(s)	141
Vha464I	CTTAAG	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	1 cut(s)	593
XbaI	TCTAGA	1 cut(s)	647
XceI	RCATGY	1 cut(s)	328
XspI	CTAG	5 cut(s)	21, 263, 528, 540, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.