Rroxscaffold_2G00105250
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002891
Physical Location & Seq
Forward (+)
28664680 .. 28665360
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105250.1

Sequence Viewer

Length: 681 bp
ATGGCGATGAAGAGCAAAAAGCCTAACCAGGGTCGCCAAAAGATTGTGATTGCCAAAATACTAAAGAGAAGTAACTTACAGGTCACATTCTCGAAACGTTGTTCAGGACTCTTCAAAAAGGCTAGTGAGCTCTGCACACTCTGTGGAGTTGAGATTGTGATCATAGTCTTTTCTCCGGCTAACAAGCCATTCTCTTTTGGCCATCCTAGTGTTGAGAGCCTCATCAGCCGCTTTCTTACTCCAAGCCATTTATCAGTTTCAAGGAGTACTCAACATCCTCCGTACTGCAGGGAGGTTAGTGTTGAACATAAGCTCAATATGCAGCTAACACAGACTCAAGGTCACTTGGAGGCTGAAAAACAGCGAGGAGAAGCACTTGACAAGCTGAGTGAAGACAGCGAGAGATCAAGCCATTGTTGGTGGGAAAACTCCATTGAGGAACTTGGATTGGATGAGCTTCAGACATTGAAGACTGCGTTGGAGGAGCTCAAGAAGAATGTGACTGAAGAAGTCCACAAAATGAATGACCCTTGCAATTCTTCAGTACCATTCTTTATGATGAATGGTATTCGACTTGATCATCGTCTTTCCGAGAGAAAAGCCGTTGAGATTAATGTATCACATGGTTCCATGATCCCTCCTAGTGCCTATAACTTTGGTTATGGACATGGCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

226

Amino Acids

25.57

Weight (kDa)

8.71

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 19 - 66 3.9e-23 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AclI AACGTT 1 cut(s) 97
AclWI GGATC 1 cut(s) 628
AcoI YGGCCR 1 cut(s) 199
AcuI CTGAAG 3 cut(s) 443, 525, 525
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 3 cut(s) 268, 284, 546
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 4 cut(s) 115, 261, 305, 469
AhdI GACNNNNNGTC 1 cut(s) 339
AjnI CCWGG 1 cut(s) 27
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 6 cut(s) 130, 313, 325, 385, 457, 487
AluI AGCT 6 cut(s) 130, 313, 325, 385, 457, 487
Alw21I GWGCWC 2 cut(s) 132, 489
AlwI GGATC 1 cut(s) 628
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 322
AseI ATTAAT 1 cut(s) 612
BalI TGGCCA 1 cut(s) 201
BanII GRGCYC 2 cut(s) 132, 489
BbsI GAAGAC 2 cut(s) 399, 476
Bbv12I GWGCWC 2 cut(s) 132, 489
BbvI GCAGC 1 cut(s) 334
BccI CCATC 1 cut(s) 210
BceAI ACGGC 1 cut(s) 587
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 2 cut(s) 159, 577
BfaI CTAG 3 cut(s) 123, 207, 642
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 2 cut(s) 229, 323
BlsI GCNGC 2 cut(s) 230, 324
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 29
BmeRI GACNNNNNGTC 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 628
BmrFI CCNGG 1 cut(s) 29
BpiI GAAGAC 2 cut(s) 399, 476
BpuEI CTTGAG 2 cut(s) 321, 473
BsaBI GATNNNNATC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 158
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 3 cut(s) 202, 274, 457
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 377
BseRI GAGGAG 2 cut(s) 381, 497
BseXI GCAGC 1 cut(s) 334
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 132, 489
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 132, 489
Bsp143I GATC 4 cut(s) 159, 404, 577, 633
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 628
BspMAI CTGCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 628
BspQI GCTCTTC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 4 cut(s) 159, 404, 577, 633
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 5, 116
BstDEI CTNAG 1 cut(s) 386
BstF5I GGATG 3 cut(s) 202, 274, 457
BstKTI GATC 4 cut(s) 162, 407, 580, 636
BstMBI GATC 4 cut(s) 159, 404, 577, 633
BstMWI GCNNNNNNNGC 2 cut(s) 225, 319
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 334
BstV2I GAAGAC 2 cut(s) 399, 476
BsuRI GGCC 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 202, 274, 457
Csp6I GTAC 3 cut(s) 267, 283, 545
CviAII CATG 3 cut(s) 623, 631, 668
CviQI GTAC 3 cut(s) 267, 283, 545
DdeI CTNAG 1 cut(s) 386
DpnI GATC 4 cut(s) 161, 406, 579, 635
DpnII GATC 4 cut(s) 159, 404, 577, 633
DraIII CACNNNGTG 1 cut(s) 143
DriI GACNNNNNGTC 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 5, 116
Eam1105I GACNNNNNGTC 1 cut(s) 339
EarI CTCTTC 2 cut(s) 5, 116
Ecl136II GAGCTC 2 cut(s) 130, 487
Eco24I GRGCYC 2 cut(s) 132, 489
Eco53kI GAGCTC 2 cut(s) 130, 487
Eco57I CTGAAG 3 cut(s) 443, 525, 525
EcoICRI GAGCTC 2 cut(s) 130, 487
EcoRII CCWGG 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 132, 489
FaeI CATG 3 cut(s) 626, 634, 671
FaiI YATR 9 cut(s) 164, 309, 320, 557, 624, 632, 651, 663, 669
FatI CATG 3 cut(s) 622, 630, 667
FbaI TGATCA 2 cut(s) 159, 577
Fnu4HI GCNGC 2 cut(s) 229, 323
FokI GGATG 3 cut(s) 189, 261, 464
FriOI GRGCYC 2 cut(s) 132, 489
Fsp4HI GCNGC 2 cut(s) 229, 323
FspBI CTAG 3 cut(s) 123, 207, 642
GluI GCNGC 2 cut(s) 229, 323
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 176
Hin1II CATG 3 cut(s) 626, 634, 671
HinfI GANTC 2 cut(s) 108, 334
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 462, 592, 680
Hpy188III TCNNGA 3 cut(s) 91, 105, 490
Hpy8I GTNNAC 1 cut(s) 514
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 135, 288, 322, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 319
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 626, 634, 671
Ksp22I TGATCA 2 cut(s) 159, 577
Kzo9I GATC 4 cut(s) 159, 404, 577, 633
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 484
LpnPI CCDG 6 cut(s) 14, 41, 65, 90, 189, 274
Lsp1109I GCAGC 1 cut(s) 334
MaeI CTAG 3 cut(s) 123, 207, 642
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 4 cut(s) 71, 82, 341, 499
MalI GATC 4 cut(s) 161, 406, 579, 635
MboI GATC 4 cut(s) 159, 404, 577, 633
MboII GAAGA 7 cut(s) 22, 103, 404, 481, 505, 518, 531
MhlI GDGCHC 2 cut(s) 132, 489
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 1 cut(s) 535
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 102, 328
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 8 cut(s) 230, 286, 288, 343, 359, 430, 475, 648
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 225, 319
NdeII GATC 4 cut(s) 159, 404, 577, 633
NlaIII CATG 3 cut(s) 626, 634, 671
NlaIV GGNNCC 1 cut(s) 628
NmuCI GTSAC 3 cut(s) 82, 341, 499
PciSI GCTCTTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 230, 324
PleI GAGTC 2 cut(s) 102, 328
PpsI GAGTC 2 cut(s) 102, 328
PshBI ATTAAT 1 cut(s) 612
Psp124BI GAGCTC 2 cut(s) 132, 489
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 628
PstI CTGCAG 1 cut(s) 290
RsaI GTAC 3 cut(s) 268, 284, 546
RsaNI GTAC 3 cut(s) 267, 283, 545
RseI CAYNNNNRTG 1 cut(s) 207
SacI GAGCTC 2 cut(s) 132, 489
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 2 cut(s) 229, 323
Sau3AI GATC 4 cut(s) 159, 404, 577, 633
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 2 cut(s) 102, 328
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 2 cut(s) 132, 489
SfcI CTRYAG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 336, 488
SmoI CTYRAG 2 cut(s) 336, 488
Sse9I AATT 1 cut(s) 535
SsiI CCGC 1 cut(s) 229
SspMI CTAG 3 cut(s) 123, 207, 642
SstI GAGCTC 2 cut(s) 132, 489
StyD4I CCNGG 1 cut(s) 27
TaiI ACGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 92, 571
TasI AATT 1 cut(s) 535
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TseFI GTSAC 3 cut(s) 82, 341, 499
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 3 cut(s) 82, 341, 499
TspDTI ATGAA 3 cut(s) 23, 536, 575
TspGWI ACGGA 1 cut(s) 270
VspI ATTAAT 1 cut(s) 612
XspI CTAG 3 cut(s) 123, 207, 642
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.