Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002891

Physical Location & Seq

Genomic Coordinates Reverse (-)

2338051 .. 2338746

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGAAGAGCAACAGATCTAGCCAAGGTCGCCAAAAGATCCCTATTGCTAAAATAGCCAAGAGAACCAATTTGCAAGTCACATTCTCCAAGCGGCGTTCGGGGCTTTTCAAGAAGGCCAGCGAGCTCTGCACACTCTGTGGTGTTGAGGTTGCAATCATAGTGTTCTCTCCGGCAAACAAGCCCTACTCCTTCTGCCACCCGGACGTTGACTCCCTCATTGACCGGTTTCTTGCTCGAAACCCTAACTTTAATATGTCTCTATCAGACTCCTGTCAACAGCTTGGTGAGGCTCACAAGAATGCTACTGCTCATGAGCTCAACATGCAGCTAACAAGGATTTCTAACCAAGTCGAGACTGAGAGAAAGCTTGGCGAATCGCTTGATAAAATGAGCAAAACCAGCGAGTGTTGGTGGGAAAACCCAGTTGATGAACTTGGACTGGATGAGCTACGAATACTTCAGGCTGCATTGGAGGAGCTCAAGAAGAATTTGAATGAACAAACCAATAGGATTTGGATGGAGTCTAGTAATACTACTAATATTGCTAATAATTCTTCGTCATTCTTTATGACGAATAATGGTCATCATTTATCTAAGAACAGCAGTCCCAGAAGTGATCAGGTTGGATCTGATTACATTGATATTCCTAGAGCATATGATTTTGGTTTTGCTGGGAATATTGGTCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

232

Amino Acids

26.05

Weight (kDa)

8.57

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	18 - 65	7.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24840
fragaria_vesca	FvH4_2g03020 FvH4_6g32050
malus_domestica	MD05G1108000.v1.1 MD10G1112400.v1.1
prunus_persica	Prupe.2G047900_v2.0.a1 Prupe.8G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139711 RchiOBHm_Chr2g0139721 RchiOBHm_Chr2g0139731 RchiOBHm_Chr6g0247811
rosa_laevigata	RLG00000015177 RLG00000019567 RLG00000019828
rosa_multiflora	Rmu_co8045644.1_g000001 Rmu_sc0000545.1_g000001 Rmu_sc0000545.1_g000002 Rmu_sc0001048.1_g000001 Rmu_sc0009714.1_g000010
rosa_roxburghii	Rroxscaffold_2G00105250 Rroxscaffold_2G00105260 Rroxscaffold_7G00213630
rosa_rugosa	Rorug02G0359300 Rorug02G0359400 Rorug04G0364100 Rorug04G0364200 Rorug05G0529100
rosa_samantha	Rh2AG409200 Rh2BG419600 Rh2CG395500 Rh2DG429200 Rh4CG452000 Rh6AG043900 Rh6CG037400 Rh6DG034500
rosa_wichuraiana	Rw2G033440 Rw2G033450 Rw6G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	2 cut(s)	34, 637
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	446
AdeI	CACNNNGTG	1 cut(s)	140
AgeI	ACCGGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	112, 496
AluBI	AGCT	7 cut(s)	127, 283, 319, 331, 370, 451, 481
AluI	AGCT	7 cut(s)	127, 283, 319, 331, 370, 451, 481
Alw21I	GWGCWC	3 cut(s)	129, 321, 483
Alw26I	GTCTC	2 cut(s)	264, 350
AlwI	GGATC	2 cut(s)	34, 637
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	328, 467
ApoI	RAATTY	1 cut(s)	490
AsiGI	ACCGGT	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	299
BanII	GRGCYC	3 cut(s)	129, 321, 483
Bbv12I	GWGCWC	3 cut(s)	129, 321, 483
BbvI	GCAGC	2 cut(s)	340, 454
BccI	CCATC	1 cut(s)	514
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	264, 350
BfaI	CTAG	3 cut(s)	21, 528, 651
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	3 cut(s)	95, 329, 468
BlsI	GCNGC	3 cut(s)	96, 330, 469
Bme1390I	CCNGG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	419
BoxI	GACNNNNGTC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	425, 447
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	451, 525
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	425, 447
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	340, 454
BseYI	CCCAGC	1 cut(s)	674
BsgI	GTGCAG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	225
BsiHKAI	GWGCWC	3 cut(s)	129, 321, 483
BsiSI	CCGG	3 cut(s)	173, 203, 226
BslFI	GGGAC	1 cut(s)	594
BsmAI	GTCTC	2 cut(s)	264, 350
BsmFI	GGGAC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	129, 321, 483
Bsp143I	GATC	4 cut(s)	17, 39, 619, 629
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	313
BspPI	GGATC	2 cut(s)	34, 637
BspQI	GCTCTTC	1 cut(s)	2
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	425, 447
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	4 cut(s)	17, 39, 619, 629
BssT1I	CCWWGG	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	2 cut(s)	121, 125
BstDEI	CTNAG	2 cut(s)	360, 597
BstF5I	GGATG	2 cut(s)	451, 525
BstKTI	GATC	4 cut(s)	20, 42, 622, 632
BstMAI	GTCTC	2 cut(s)	264, 350
BstMBI	GATC	4 cut(s)	17, 39, 619, 629
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 56, 103, 129, 325, 402
BstNSI	RCATGY	1 cut(s)	328
BstPAI	GACNNNNGTC	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	340, 454
BstX2I	RGATCY	3 cut(s)	17, 39, 629
BstYI	RGATCY	3 cut(s)	17, 39, 629
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	451, 525
Cac8I	GCNNGC	2 cut(s)	121, 125
CciI	TCATGA	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	225
CspAI	ACCGGT	1 cut(s)	225
CviAII	CATG	2 cut(s)	314, 325
DdeI	CTNAG	2 cut(s)	360, 597
DpnI	GATC	4 cut(s)	19, 41, 621, 631
DpnII	GATC	4 cut(s)	17, 39, 619, 629
DraIII	CACNNNGTG	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Ecl136II	GAGCTC	3 cut(s)	127, 319, 481
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	3 cut(s)	129, 321, 483
Eco53kI	GAGCTC	3 cut(s)	127, 319, 481
Eco57I	CTGAAG	1 cut(s)	446
EcoICRI	GAGCTC	3 cut(s)	127, 319, 481
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	3 cut(s)	129, 321, 483
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	317, 328
FaiI	YATR	7 cut(s)	161, 257, 315, 326, 572, 658, 660
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	2 cut(s)	313, 324
FauNDI	CATATG	1 cut(s)	658
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	3 cut(s)	95, 329, 468
FokI	GGATG	2 cut(s)	458, 532
FriOI	GRGCYC	3 cut(s)	129, 321, 483
Fsp4HI	GCNGC	3 cut(s)	95, 329, 468
FspBI	CTAG	3 cut(s)	21, 528, 651
GluI	GCNGC	3 cut(s)	95, 329, 468
GsaI	CCCAGC	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	3 cut(s)	173, 203, 226
Hin1II	CATG	2 cut(s)	317, 328
HincII	GTYRAC	2 cut(s)	211, 278
HindII	GTYRAC	2 cut(s)	211, 278
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	4 cut(s)	212, 269, 377, 524
HpaII	CCGG	3 cut(s)	173, 203, 226
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	211, 278
Hpy188I	TCNGA	3 cut(s)	268, 634, 695
Hpy188III	TCNNGA	4 cut(s)	112, 314, 355, 484
Hpy8I	GTNNAC	2 cut(s)	211, 278
HpyAV	CCTTC	2 cut(s)	109, 202
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	5 cut(s)	76, 132, 155, 328, 470
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 56, 103, 129, 325, 402
HpyF3I	CTNAG	2 cut(s)	360, 597
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	317, 328
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	17, 39, 619, 629
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	2 cut(s)	340, 454
MaeI	CTAG	3 cut(s)	21, 528, 651
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	4 cut(s)	19, 41, 621, 631
MboI	GATC	4 cut(s)	17, 39, 619, 629
MboII	GAAGA	4 cut(s)	16, 19, 499, 549
MflI	RGATCY	3 cut(s)	17, 39, 629
MhlI	GDGCHC	3 cut(s)	129, 321, 483
MluCI	AATT	3 cut(s)	70, 490, 553
MlyI	GAGTC	3 cut(s)	206, 263, 533
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	4 cut(s)	142, 227, 283, 469
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	3 cut(s)	173, 203, 226
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	6 cut(s)	30, 56, 103, 129, 325, 402
NciI	CCSGG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	4 cut(s)	17, 39, 619, 629
NlaIII	CATG	2 cut(s)	317, 328
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	328
PagI	TCATGA	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	2
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	377
PinAI	ACCGGT	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	96, 330, 469
PleI	GAGTC	3 cut(s)	206, 263, 532
PpsI	GAGTC	3 cut(s)	206, 263, 532
PshAI	GACNNNNGTC	1 cut(s)	273
Psp124BI	GAGCTC	3 cut(s)	129, 321, 483
PspFI	CCCAGC	1 cut(s)	674
PsuI	RGATCY	3 cut(s)	17, 39, 629
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	3 cut(s)	129, 321, 483
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	95, 329, 468
Sau3AI	GATC	4 cut(s)	17, 39, 619, 629
SchI	GAGTC	3 cut(s)	206, 263, 533
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	3 cut(s)	129, 321, 483
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	3 cut(s)	70, 490, 553
SsiI	CCGC	1 cut(s)	94
SspI	AATATT	2 cut(s)	544, 682
SspMI	CTAG	3 cut(s)	21, 528, 651
SstI	GAGCTC	3 cut(s)	129, 321, 483
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	25
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	238, 354
TasI	AATT	3 cut(s)	70, 490, 553
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	328, 467
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	17, 447, 513
XapI	RAATTY	1 cut(s)	490
XceI	RCATGY	1 cut(s)	328
XspI	CTAG	3 cut(s)	21, 528, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.