AT2G34560

Katanin p60 ATPase-containing subunit A-like 2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14560163 .. 14562950
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34560.1

Sequence Viewer

Length: 1155 bp
ATGGCCACCGATGAGCCTTCTCAAACTCGCTGGAGCTTTCTGTTTGGGAGGAAGAAGCTGCCTGAAGAAGATGTATCAAACAAGGACCAACCAGAAGATGGATCATCCAACGGTAATAACGGTGATGTCAACAACAACTCTTCCCCAGTCACCAATCAGGATGGTAACACAGCCTTGGCCAATGGCAATGTGATTCGCGAGAAGCCGAAAAAGTCCATGTTTCCCCCGTTTGAGTCTGCGGAAACTCGTACTCTCGCTGAGAGTTTGAGTAGGGATATCATCCGTGGGAATCCAAATATCAAGTGGGAAAGCATCAAAGGTTTGGAGAACGCTAAAAAGTTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCACGTACTTTAATGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAGACTATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAACATCTCAGCCTCATCTGTTGTTAGCAAATGGAGAGGTGATTCTGAGAAGTTGATAAGAGTTCTGTTCGATCTAGCTAGGCATCATGCACCTTCGACAATATTTCTTGATGAGATCGACGCGATCATAAGCCAACGTGGTGGTGAAGGCCGCAGTGAACATGAAGCTAGCAGGCGTCTCAAAACCGAGCTGCTCATTCAGATGGATGGGTTACAGAAAACGAATGAGCTCGTATTTGTTTTAGCAGCAACAAATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATGCTTATACCGTCACAACCAGGTGATGAGCCATTGCCTCATGATGTGTTGGTTGAGAAATCTGAGGGCTACTCTGGTTCAGACATTCGAATACTTTGTAAGGAAGCTGCGATGCAACCACTGAGACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGAGCAACACTCGACCATCGGCTCATCTGCACGCCCATCTTTACGACAAGTTCAATGATGATTATGGTAGCCAAATTCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

384

Amino Acids

42.87

Weight (kDa)

5.57

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 139 - 271 1.8e-41 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 298 - 331 1.5e-10 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 437
AccB7I CCANNNNNTGG 2 cut(s) 98, 1034
AccI GTMKAC 1 cut(s) 394
AccII CGCG 2 cut(s) 198, 617
AciI CCGC 2 cut(s) 239, 646
AclWI GGATC 3 cut(s) 109, 812, 825
AcoI YGGCCR 2 cut(s) 3, 177
AcsI RAATTY 3 cut(s) 414, 798, 1143
AcuI CTGAAG 2 cut(s) 84, 1035
AcyI GRCGYC 2 cut(s) 670, 784
AfaI GTAC 4 cut(s) 250, 383, 439, 807
AfiI CCNNNNNNNGG 4 cut(s) 98, 410, 440, 1034
AgsI TTSAA 2 cut(s) 496, 1123
AjnI CCWGG 3 cut(s) 433, 755, 865
Alw21I GWGCWC 2 cut(s) 726, 1069
Alw26I GTCTC 2 cut(s) 677, 964
AlwI GGATC 3 cut(s) 109, 812, 825
AoxI GGCC 3 cut(s) 3, 177, 643
ApeKI GCWGC 6 cut(s) 58, 685, 740, 770, 953, 1024
ApoI RAATTY 3 cut(s) 414, 798, 1143
Asp718I GGTACC 1 cut(s) 437
AspS9I GGNCC 3 cut(s) 85, 428, 1037
AsuHPI GGTGA 6 cut(s) 134, 142, 370, 545, 650, 881
AsuII TTCGAA 1 cut(s) 934
AsuNHI GCTAGC 1 cut(s) 662
AvaII GGWCC 3 cut(s) 85, 428, 1037
BalI TGGCCA 2 cut(s) 5, 179
BamHI GGATCC 1 cut(s) 817
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 2 cut(s) 726, 1069
BbsI GAAGAC 3 cut(s) 999, 1023, 1059
Bbv12I GWGCWC 2 cut(s) 726, 1069
BbvI GCAGC 6 cut(s) 45, 672, 752, 782, 940, 1011
BccI CCATC 7 cut(s) 92, 155, 691, 695, 1049, 1093, 1113
BciT130I CCWGG 3 cut(s) 435, 757, 867
BcoDI GTCTC 2 cut(s) 677, 964
BfaI CTAG 5 cut(s) 569, 573, 663, 764, 788
BfmI CTRYAG 1 cut(s) 471
BisI GCNGC 7 cut(s) 59, 646, 686, 741, 771, 954, 1025
BlsI GCNGC 7 cut(s) 60, 647, 687, 742, 772, 955, 1026
Bme1390I CCNGG 3 cut(s) 435, 757, 867
Bme18I GGWCC 3 cut(s) 85, 428, 1037
BmgT120I GGNCC 3 cut(s) 85, 428, 1037
BmiI GGNNCC 3 cut(s) 439, 819, 1039
BmrFI CCNGG 3 cut(s) 435, 757, 867
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 6 cut(s) 321, 351, 586, 757, 837, 948
BmtI GCTAGC 1 cut(s) 666
BmuI ACTGGG 1 cut(s) 140
BpiI GAAGAC 3 cut(s) 999, 1023, 1059
BplI GAGNNNNNCTC 4 cut(s) 902, 934, 1063, 1095
BpmI CTGGAG 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 934
BpuEI CTTGAG 1 cut(s) 1133
BsaAI YACGTR 1 cut(s) 381
BsaHI GRCGYC 2 cut(s) 670, 784
BsaJI CCNNGG 5 cut(s) 174, 283, 404, 755, 756
BsaWI WCCGGW 2 cut(s) 440, 814
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 410, 440, 1034
Bse1I ACTGG 1 cut(s) 146
Bse3DI GCAATG 2 cut(s) 193, 878
BseBI CCWGG 3 cut(s) 435, 757, 867
BseDI CCNNGG 5 cut(s) 174, 283, 404, 755, 756
BseGI GGATG 5 cut(s) 104, 166, 279, 706, 1041
BseLI CCNNNNNNNGG 4 cut(s) 98, 410, 440, 1034
BseMI GCAATG 2 cut(s) 193, 878
BseMII CTCAG 6 cut(s) 249, 516, 531, 900, 959, 1061
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 6 cut(s) 45, 672, 752, 782, 940, 1011
BsgI GTGCAG 1 cut(s) 1082
Bsh1236I CGCG 2 cut(s) 198, 617
BshFI GGCC 3 cut(s) 5, 179, 645
BshNI GGYRCC 1 cut(s) 437
BsiHKAI GWGCWC 2 cut(s) 726, 1069
BsiSI CCGG 3 cut(s) 441, 781, 815
BslFI GGGAC 1 cut(s) 1023
BslI CCNNNNNNNGG 4 cut(s) 98, 410, 440, 1034
BsmAI GTCTC 2 cut(s) 677, 964
BsmBI CGTCTC 2 cut(s) 677, 964
BsmFI GGGAC 1 cut(s) 1023
BsnI GGCC 3 cut(s) 5, 179, 645
Bsp119I TTCGAA 1 cut(s) 934
Bsp1286I GDGCHC 2 cut(s) 726, 1069
Bsp143I GATC 6 cut(s) 101, 565, 609, 618, 817, 1060
Bsp19I CCATGG 1 cut(s) 404
Bsp68I TCGCGA 1 cut(s) 198
BspACI CCGC 2 cut(s) 239, 646
BspANI GGCC 3 cut(s) 5, 179, 645
BspCNI CTCAG 6 cut(s) 250, 515, 532, 901, 960, 1062
BspFNI CGCG 2 cut(s) 198, 617
BspHI TCATGA 1 cut(s) 886
BspLI GGNNCC 3 cut(s) 439, 819, 1039
BspOI GCTAGC 1 cut(s) 666
BspPI GGATC 3 cut(s) 109, 812, 825
BspT104I TTCGAA 1 cut(s) 934
BspT107I GGYRCC 1 cut(s) 437
BsrDI GCAATG 2 cut(s) 193, 878
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 5 cut(s) 174, 283, 404, 755, 756
BssMI GATC 6 cut(s) 101, 565, 609, 618, 817, 1060
BssNI GRCGYC 2 cut(s) 670, 784
BssT1I CCWWGG 2 cut(s) 174, 404
Bst2UI CCWGG 3 cut(s) 435, 757, 867
Bst4CI ACNGT 3 cut(s) 113, 122, 858
Bst6I CTCTTC 2 cut(s) 145, 826
BstACI GRCGYC 2 cut(s) 670, 784
BstBAI YACGTR 1 cut(s) 381
BstBI TTCGAA 1 cut(s) 934
BstC8I GCNNGC 4 cut(s) 456, 664, 668, 1101
BstDEI CTNAG 6 cut(s) 258, 502, 540, 909, 968, 1070
BstDSI CCRYGG 2 cut(s) 283, 404
BstF5I GGATG 5 cut(s) 104, 166, 279, 706, 1041
BstFNI CGCG 2 cut(s) 198, 617
BstKTI GATC 6 cut(s) 104, 568, 612, 621, 820, 1063
BstMAI GTCTC 2 cut(s) 677, 964
BstMBI GATC 6 cut(s) 101, 565, 609, 618, 817, 1060
BstNI CCWGG 3 cut(s) 435, 757, 867
BstSCI CCNGG 3 cut(s) 433, 755, 865
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 2 cut(s) 198, 617
BstV1I GCAGC 6 cut(s) 45, 672, 752, 782, 940, 1011
BstV2I GAAGAC 3 cut(s) 999, 1023, 1059
BstX2I RGATCY 1 cut(s) 817
BstXI CCANNNNNNTGG 1 cut(s) 635
BstYI RGATCY 1 cut(s) 817
BsuRI GGCC 3 cut(s) 5, 179, 645
BtgI CCRYGG 2 cut(s) 283, 404
BtgZI GCGATG 1 cut(s) 971
BtsCI GGATG 5 cut(s) 104, 166, 279, 706, 1041
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 2 cut(s) 655, 965
BtuMI TCGCGA 1 cut(s) 198
Cac8I GCNNGC 4 cut(s) 456, 664, 668, 1101
CciI TCATGA 1 cut(s) 886
Cfr13I GGNCC 3 cut(s) 85, 428, 1037
CseI GACGC 4 cut(s) 623, 659, 773, 981
CsiI ACCWGGT 1 cut(s) 865
Csp6I GTAC 4 cut(s) 249, 382, 438, 806
CviAII CATG 5 cut(s) 217, 405, 581, 656, 887
CviQI GTAC 4 cut(s) 249, 382, 438, 806
DdeI CTNAG 6 cut(s) 258, 502, 540, 909, 968, 1070
DpnI GATC 6 cut(s) 103, 567, 611, 620, 819, 1062
DpnII GATC 6 cut(s) 101, 565, 609, 618, 817, 1060
EaeI YGGCCR 2 cut(s) 3, 177
Eam1104I CTCTTC 2 cut(s) 145, 826
EarI CTCTTC 2 cut(s) 145, 826
Ecl136II GAGCTC 2 cut(s) 724, 1067
Eco130I CCWWGG 2 cut(s) 174, 404
Eco24I GRGCYC 2 cut(s) 726, 1069
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 3 cut(s) 85, 428, 1037
Eco53kI GAGCTC 2 cut(s) 724, 1067
Eco57I CTGAAG 2 cut(s) 84, 1035
EcoICRI GAGCTC 2 cut(s) 724, 1067
EcoRI GAATTC 2 cut(s) 414, 798
EcoRII CCWGG 3 cut(s) 433, 755, 865
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 174, 404
EcoT38I GRGCYC 2 cut(s) 726, 1069
ErhI CCWWGG 2 cut(s) 174, 404
Esp3I CGTCTC 2 cut(s) 677, 964
FaeI CATG 5 cut(s) 220, 408, 584, 659, 890
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 1 cut(s) 1023
FatI CATG 5 cut(s) 216, 404, 580, 655, 886
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 7 cut(s) 59, 646, 686, 741, 771, 954, 1025
FokI GGATG 5 cut(s) 91, 173, 266, 713, 1028
FriOI GRGCYC 2 cut(s) 726, 1069
Fsp4HI GCNGC 7 cut(s) 59, 646, 686, 741, 771, 954, 1025
FspBI CTAG 5 cut(s) 569, 573, 663, 764, 788
GluI GCNGC 7 cut(s) 59, 646, 686, 741, 771, 954, 1025
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 3 cut(s) 5, 179, 645
HapII CCGG 3 cut(s) 441, 781, 815
HgaI GACGC 4 cut(s) 623, 659, 773, 981
Hin1I GRCGYC 2 cut(s) 670, 784
Hin1II CATG 5 cut(s) 220, 408, 584, 659, 890
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 4 cut(s) 193, 233, 289, 536
HpaII CCGG 3 cut(s) 441, 781, 815
HphI GGTGA 6 cut(s) 134, 142, 370, 545, 650, 881
Hpy166II GTNNAC 3 cut(s) 130, 395, 653
Hpy188I TCNGA 5 cut(s) 541, 696, 910, 928, 1071
Hpy188III TCNNGA 7 cut(s) 158, 197, 602, 788, 821, 844, 887
Hpy8I GTNNAC 3 cut(s) 130, 395, 653
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 3 cut(s) 27, 597, 635
HpyCH4III ACNGT 3 cut(s) 113, 122, 858
HpyCH4IV ACGT 2 cut(s) 380, 631
HpyCH4V TGCA 6 cut(s) 458, 480, 584, 770, 961, 1099
HpyF3I CTNAG 6 cut(s) 258, 502, 540, 909, 968, 1070
HpySE526I ACGT 2 cut(s) 380, 631
Hsp92I GRCGYC 2 cut(s) 670, 784
Hsp92II CATG 5 cut(s) 220, 408, 584, 659, 890
KpnI GGTACC 1 cut(s) 441
Kzo9I GATC 6 cut(s) 101, 565, 609, 618, 817, 1060
LmnI GCTCC 2 cut(s) 33, 783
Lsp1109I GCAGC 6 cut(s) 45, 672, 752, 782, 940, 1011
LweI GCATC 6 cut(s) 321, 351, 586, 757, 837, 948
MabI ACCWGGT 1 cut(s) 865
MaeI CTAG 5 cut(s) 569, 573, 663, 764, 788
MaeII ACGT 2 cut(s) 380, 631
MaeIII GTNAC 4 cut(s) 148, 164, 705, 858
MalI GATC 6 cut(s) 103, 567, 611, 620, 819, 1062
MboI GATC 6 cut(s) 101, 565, 609, 618, 817, 1060
MflI RGATCY 1 cut(s) 817
MhlI GDGCHC 2 cut(s) 726, 1069
MlsI TGGCCA 2 cut(s) 5, 179
MluCI AATT 4 cut(s) 414, 798, 1032, 1143
MluNI TGGCCA 2 cut(s) 5, 179
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 7 cut(s) 42, 441, 517, 524, 827, 894, 904
Mox20I TGGCCA 2 cut(s) 5, 179
MscI TGGCCA 2 cut(s) 5, 179
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 695
Msp20I TGGCCA 2 cut(s) 5, 179
MspI CCGG 3 cut(s) 441, 781, 815
MspR9I CCNGG 3 cut(s) 435, 757, 867
MvaI CCWGG 3 cut(s) 435, 757, 867
MvnI CGCG 2 cut(s) 198, 617
NcoI CCATGG 1 cut(s) 404
NdeII GATC 6 cut(s) 101, 565, 609, 618, 817, 1060
NheI GCTAGC 1 cut(s) 662
NlaIII CATG 5 cut(s) 220, 408, 584, 659, 890
NlaIV GGNNCC 3 cut(s) 439, 819, 1039
NmuCI GTSAC 2 cut(s) 148, 858
NruI TCGCGA 1 cut(s) 198
NspV TTCGAA 1 cut(s) 934
PagI TCATGA 1 cut(s) 886
PasI CCCWGGG 1 cut(s) 756
PfeI GAWTC 3 cut(s) 193, 289, 536
PflMI CCANNNNNTGG 2 cut(s) 98, 1034
PkrI GCNGC 7 cut(s) 60, 647, 687, 742, 772, 955, 1026
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 381
Psp124BI GAGCTC 2 cut(s) 726, 1069
Psp6I CCWGG 3 cut(s) 433, 755, 865
PspGI CCWGG 3 cut(s) 433, 755, 865
PspN4I GGNNCC 3 cut(s) 439, 819, 1039
PspPI GGNCC 3 cut(s) 85, 428, 1037
PsuI RGATCY 1 cut(s) 817
RruI TCGCGA 1 cut(s) 198
RsaI GTAC 4 cut(s) 250, 383, 439, 807
RsaNI GTAC 4 cut(s) 249, 382, 438, 806
RseI CAYNNNNRTG 1 cut(s) 695
SacI GAGCTC 2 cut(s) 726, 1069
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 7 cut(s) 59, 646, 686, 741, 771, 954, 1025
Sau3AI GATC 6 cut(s) 101, 565, 609, 618, 817, 1060
Sau96I GGNCC 3 cut(s) 85, 428, 1037
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 3 cut(s) 435, 757, 867
SduI GDGCHC 2 cut(s) 726, 1069
SexAI ACCWGGT 1 cut(s) 865
SfaNI GCATC 6 cut(s) 321, 351, 586, 757, 837, 948
SfcI CTRYAG 1 cut(s) 471
SfuI TTCGAA 1 cut(s) 934
SinI GGWCC 3 cut(s) 85, 428, 1037
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 1148
SmoI CTYRAG 1 cut(s) 1148
Sse9I AATT 4 cut(s) 414, 798, 1032, 1143
SsiI CCGC 2 cut(s) 239, 646
SspI AATATT 1 cut(s) 597
SspMI CTAG 5 cut(s) 569, 573, 663, 764, 788
SstI GAGCTC 2 cut(s) 726, 1069
StyD4I CCNGG 3 cut(s) 433, 755, 865
StyI CCWWGG 2 cut(s) 174, 404
TaaI ACNGT 3 cut(s) 113, 122, 858
TaiI ACGT 2 cut(s) 383, 634
TaqI TCGA 7 cut(s) 564, 590, 612, 843, 934, 1063, 1081
TasI AATT 4 cut(s) 414, 798, 1032, 1143
TauI GCSGC 1 cut(s) 648
TfiI GAWTC 3 cut(s) 193, 289, 536
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 2 cut(s) 655, 972
TseFI GTSAC 2 cut(s) 148, 858
TseI GCWGC 6 cut(s) 58, 685, 740, 770, 953, 1024
Tsp45I GTSAC 2 cut(s) 148, 858
TspDTI ATGAA 1 cut(s) 672
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 655, 972
Van91I CCANNNNNTGG 2 cut(s) 98, 1034
VpaK11BI GGWCC 3 cut(s) 85, 428, 1037
XapI RAATTY 3 cut(s) 414, 798, 1143
XbaI TCTAGA 1 cut(s) 787
XcmI CCANNNNNNNNNTGG 2 cut(s) 95, 300
XmiI GTMKAC 1 cut(s) 394
XspI CTAG 5 cut(s) 569, 573, 663, 764, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.