Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002713

Physical Location & Seq

Genomic Coordinates Forward (+)

23106223 .. 23107744

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGTTCATCATTTTCAACCGTATTAATCCCCCACTTTCTCAGTTACCTCCCACAATTAACCGGCTATTCCCTCCAGGCTTCTATTCCCCCATTTTCGGATCAAACTTCTTCCTCACACAAACCTCTCTATACAATCGATCATTCAAGAGACTCTGTAACCTCCCACAATTCCACGTACAACTCTATTCATTCTGTTTTCTAACTGCAGCCTACCACTCCATATTCTCTCCTTCTTTCACTACTATTTCTCTACAGGTTTCAGTTCTCACCCATTTGCATGCTAAGAATGTACACAAATCGGATGCCAAGTTTGGTAGAAAGAAAGCGCCAGAGCCGCAGCAAAACGTGCAGTCCGTTGATGGTGTTGTGACTAATGGGAGTAGTTCATGTGAAGAGAACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM_bind

Protein Analysis

136

Amino Acids

15.25

Weight (kDa)

9.55

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34560 AT2G34560
fragaria_vesca	FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g24600
malus_domestica	MD05G1283700.v1.1 MD10G1261900.v1.1 MD11G1161400.v1.1 MD17G1012100.v1.1
prunus_persica	Prupe.4G080800_v2.0.a1 Prupe.4G080800_v2.0.a1 Prupe.6G127100_v2.0.a1
pyrus_communis	pycom05g26280 pycom07g21360 pycom10g21820 pycom11g13380
rosa_chinensis	RchiOBHm_Chr5g0014221 RchiOBHm_Chr5g0044151
rosa_laevigata	RLG00000032091 RLG00000034247
rosa_multiflora	Rmu_sc0000939.1_g000032 Rmu_sc0014980.1_g000003 Rmu_ssc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036900 Rroxscaffold_1G00062360
rosa_rugosa	Rorug05G0016300 Rorug05G0210900 Rorug05G0211000
rosa_samantha	Rh5AG295800 Rh5BG303600 Rh5CG119300 Rh5CG330600 Rh5DG312400
rosa_wichuraiana	Rw5G009640 Rw5G027350 Rw5G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	1 cut(s)	109
AfaI	GTAC	2 cut(s)	180, 294
AfiI	CCNNNNNNNGG	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	2 cut(s)	19, 148
AjnI	CCWGG	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	209, 340
AseI	ATTAAT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	221, 352
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	145
BfmI	CTRYAG	2 cut(s)	207, 254
BfoI	RGCGCY	1 cut(s)	332
BisI	GCNGC	3 cut(s)	210, 338, 341
BlsI	GCNGC	3 cut(s)	211, 339, 342
Bme1390I	CCNGG	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	295
BpmI	CTGGAG	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	139
BsaAI	YACGTR	2 cut(s)	178, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	139
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	221, 352
BsgI	GTGCAG	1 cut(s)	371
BshVI	ATCGAT	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	101, 140
BspACI	CCGC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	63
BssMI	GATC	2 cut(s)	101, 140
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstAUI	TGTACA	1 cut(s)	292
BstBAI	YACGTR	2 cut(s)	178, 405
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	42, 285
BstF5I	GGATG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	2 cut(s)	104, 143
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	101, 140
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 349
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	2 cut(s)	207, 254
BstV1I	GCAGC	2 cut(s)	221, 352
Bsu15I	ATCGAT	1 cut(s)	139
BsuTUI	ATCGAT	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	63
ClaI	ATCGAT	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	179, 293
CviAII	CATG	2 cut(s)	281, 390
CviJI	RGCY	4 cut(s)	67, 81, 212, 337
CviKI_1	RGCY	4 cut(s)	67, 81, 212, 337
CviQI	GTAC	2 cut(s)	179, 293
DdeI	CTNAG	2 cut(s)	42, 285
DpnI	GATC	2 cut(s)	103, 142
DpnII	GATC	2 cut(s)	101, 140
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	284, 393
FaiI	YATR	4 cut(s)	133, 224, 282, 391
FatI	CATG	2 cut(s)	280, 389
Fnu4HI	GCNGC	3 cut(s)	210, 338, 341
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	210, 338, 341
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	3 cut(s)	210, 338, 341
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	332
HapII	CCGG	1 cut(s)	64
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	284, 393
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	1 cut(s)	153
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	101, 304
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	3 cut(s)	177, 348, 404
HpyCH4V	TGCA	3 cut(s)	209, 280, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 349
HpyF3I	CTNAG	2 cut(s)	42, 285
HpySE526I	ACGT	3 cut(s)	177, 348, 404
Hsp92II	CATG	2 cut(s)	284, 393
HspAI	GCGC	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	101, 140
LpnPI	CCDG	5 cut(s)	63, 77, 90, 242, 345
Lsp1109I	GCAGC	2 cut(s)	221, 352
LweI	GCATC	1 cut(s)	295
MaeII	ACGT	3 cut(s)	177, 348, 404
MaeIII	GTNAC	3 cut(s)	45, 158, 370
MalI	GATC	2 cut(s)	103, 142
MboI	GATC	2 cut(s)	101, 140
MboII	GAAGA	2 cut(s)	103, 407
MluCI	AATT	2 cut(s)	57, 170
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	5 cut(s)	60, 84, 125, 136, 173
MseI	TTAA	2 cut(s)	27, 60
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	337, 349
NdeII	GATC	2 cut(s)	101, 140
NlaIII	CATG	2 cut(s)	284, 393
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PkrI	GCNGC	3 cut(s)	211, 339, 342
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Ppu21I	YACGTR	2 cut(s)	178, 405
PshBI	ATTAAT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	180, 294
RsaNI	GTAC	2 cut(s)	179, 293
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	27, 60
SatI	GCNGC	3 cut(s)	210, 338, 341
Sau3AI	GATC	2 cut(s)	101, 140
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	7 cut(s)	52, 128, 165, 180, 261, 351, 407
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	2 cut(s)	207, 254
SmiMI	CAYNNNNRTG	1 cut(s)	279
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	57, 170
SsiI	CCGC	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	3 cut(s)	180, 351, 407
TaqI	TCGA	1 cut(s)	139
TasI	AATT	2 cut(s)	57, 170
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	27, 60
Tru9I	TTAA	2 cut(s)	27, 60
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	209, 340
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	180, 378
TspGWI	ACGGA	1 cut(s)	346
VspI	ATTAAT	1 cut(s)	27
XceI	RCATGY	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.