Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000939.1

Orthogroup ID

OG0002713

Physical Location & Seq

Genomic Coordinates Reverse (-)

170997 .. 171269

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000939.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgagtggaaagctatctgttcagcgtacagttacttattacggcaaaggcccaacagtatatgctgcatatgtagactacccagcaggtgtaaatgttacagtaacaccagctaaactcaagtttacaaataccggggaaaagatgtctttcagtgttgatttcacccccctcaagaatagtaatggaagctttgtgtttggagctctgacatggagtaatggtattcagaatgttaggagtcctattggtcttaatgtgctttcaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

90

Amino Acids

9.66

Weight (kDa)

9.76

Isoelectric Point (pI)

16.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34560 AT2G34560
fragaria_vesca	FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g24600
malus_domestica	MD05G1283700.v1.1 MD10G1261900.v1.1 MD11G1161400.v1.1 MD17G1012100.v1.1
prunus_persica	Prupe.4G080800_v2.0.a1 Prupe.4G080800_v2.0.a1 Prupe.6G127100_v2.0.a1
pyrus_communis	pycom05g26280 pycom07g21360 pycom10g21820 pycom11g13380
rosa_chinensis	RchiOBHm_Chr5g0014221 RchiOBHm_Chr5g0044151
rosa_laevigata	RLG00000032091 RLG00000034247
rosa_multiflora	Rmu_sc0000939.1_g000032 Rmu_sc0014980.1_g000003 Rmu_ssc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036900 Rroxscaffold_1G00062360
rosa_rugosa	Rorug05G0016300 Rorug05G0210900 Rorug05G0211000
rosa_samantha	Rh5AG295800 Rh5BG303600 Rh5CG119300 Rh5CG330600 Rh5DG312400
rosa_wichuraiana	Rw5G009640 Rw5G027350 Rw5G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	267
AluBI	AGCT	4 cut(s)	13, 113, 192, 206
AluI	AGCT	4 cut(s)	13, 113, 192, 206
Alw21I	GWGCWC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	136
BpuEI	CTTGAG	2 cut(s)	104, 158
BpuMI	CCSGG	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
BseDI	CCNNGG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	82
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	135
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	135
Bst4CI	ACNGT	3 cut(s)	31, 58, 103
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	5 cut(s)	13, 51, 113, 192, 206
CviKI_1	RGCY	5 cut(s)	13, 51, 113, 192, 206
CviQI	GTAC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	1 cut(s)	216
FaiI	YATR	6 cut(s)	61, 63, 70, 72, 214, 271
FatI	CATG	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
GsaI	CCCAGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	76, 126
Hpy188I	TCNGA	2 cut(s)	210, 231
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	2 cut(s)	76, 126
HpyCH4III	ACNGT	3 cut(s)	31, 58, 103
HpyCH4V	TGCA	1 cut(s)	68
Hsp92II	CATG	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	4 cut(s)	72, 96, 123, 148
Lsp1109I	GCAGC	1 cut(s)	52
MaeIII	GTNAC	3 cut(s)	31, 97, 103
MhlI	GDGCHC	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	1 cut(s)	182
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	136
NciI	CCSGG	1 cut(s)	136
NdeI	CATATG	1 cut(s)	70
NlaIII	CATG	1 cut(s)	216
PaqCI	CACCTGC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	5 cut(s)	15, 91, 115, 194, 208
SgeI	CNNG	8 cut(s)	95, 99, 122, 133, 147, 148, 187, 225
SmlI	CTYRAG	2 cut(s)	119, 173
SmoI	CTYRAG	2 cut(s)	119, 173
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	3 cut(s)	31, 58, 103
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	65
TspRI	CASTG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.