Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002713

Physical Location & Seq

Genomic Coordinates Reverse (-)

41732007 .. 41743919

Gene Structure 11913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1283700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTCCGACGAGCCTGCTCCCACTCGCTGGTCCTTTCAGTTTGGTAGAAAGAAAGTGCCGGAGCCGCAGCAAAACGGACAGTCCACTGATGGAGCTGTGAGTAATGGGAGTAGTTCCGGCGTGACTGCGAATGGGAATGGTCATGTGAAGAGAACAGCTGACTTGGCCATCTATGAGCAATTTCAAAACCAGGGTAGGAGCTTGGCAACTCACTCAAATGGAGTCTTATCTGATCGGCATGATGAGATACCGCAGAAGTCCCTTTTACCTGCTTTTGAATCGGCAGAAATGCGTTCTTTAGGAGAGAGTTTATGCAGGGATATAGTTCGTGGTAGTCCAGATGTTAAGTGGGAAAGCATCAAGGGATTAGAGAATGCCAAGCGTTTGCTCAAAGAAGCAGTGGTCATGCCAATCAAATATCCCAAGTACTTTACTGGACTTTTAACACCGTGGAAAGGTATTCTCCTTTTTGGACCTCCAGGGACGGGAAAGACAATGCTTGCCAAGGCTGTTGCAACAGAGTGCAAGACCACATTTTTCAACATTTCAGCATCGTCCGTTGTCAGTAAATGGCGTGGCGACTCAGAGAAGTTAGTGAAGGTGTTATTTGAGCTTGCTAGGCACCATGCACCATCAACTATATTTATTGATGAAATTGACGCAATTATCAGTCAACGTGGTGAAGGACGAAGTGAGCATGAAGCAAGTAGGCGTCTTAAGACAGAGCTACTCATACAGATGGATGGTTTGACGAAGACAAGTGAACTTGTTTTTGTTTTGGCTGCAACAAATCTTCCCTGGGAACTGGATGCAGCCATGCTCCGGCGTCTTGAGAAGCGAATTCTTGTGCCTCTGCCTGAACCAGAAGCAAGGAGAGCCATGTTTGAGGAGCTCCTGCCAGCACAGCCTGATGAGGAGAAGCTTCCTTATGATTTGTTGGTAGACAGGACGGAAGGATACTCAGGTTCGGATATTCGATTGGTGTGCAAGGAGGCTGCCATGCAGCCTTTGAGACGCGTAATGACATTCCTTGAAGACAAAGAGGAGACGGTTCCTGAGGATGAACTGCCTAAGGTTGGACCGATCAAACCCGAAGATATTGAGACGGCTTTGAAGAACACAAGGCCGTCTGCTCATCTCCAAGCTCATCGTTACGAGAAGTTCAATGCTGATTACGGTAGTCAAATACTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0015630 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

399

Amino Acids

44.48

Weight (kDa)

6.15

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	154 - 285	3.2e-41	ATPase family associated with various cellular activities (AAA)
RuvB_N	PF05496	154 - 223	3.5e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA_lid_3	PF17862	311 - 347	3.6e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34560 AT2G34560
fragaria_vesca	FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g24600
malus_domestica	MD05G1283700.v1.1 MD10G1261900.v1.1 MD11G1161400.v1.1 MD17G1012100.v1.1
prunus_persica	Prupe.4G080800_v2.0.a1 Prupe.4G080800_v2.0.a1 Prupe.6G127100_v2.0.a1
pyrus_communis	pycom05g26280 pycom07g21360 pycom10g21820 pycom11g13380
rosa_chinensis	RchiOBHm_Chr5g0014221 RchiOBHm_Chr5g0044151
rosa_laevigata	RLG00000032091 RLG00000034247
rosa_multiflora	Rmu_sc0000939.1_g000032 Rmu_sc0014980.1_g000003 Rmu_ssc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036900 Rroxscaffold_1G00062360
rosa_rugosa	Rorug05G0016300 Rorug05G0210900 Rorug05G0211000
rosa_samantha	Rh5AG295800 Rh5BG303600 Rh5CG119300 Rh5CG330600 Rh5DG312400
rosa_wichuraiana	Rw5G009640 Rw5G027350 Rw5G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	621
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	942
AccII	CGCG	1 cut(s)	1017
AciI	CCGC	2 cut(s)	65, 251
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	840
AcyI	GRCGYC	2 cut(s)	712, 826
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	5 cut(s)	27, 455, 485, 822, 1076
AflII	CTTAAG	1 cut(s)	716
AflIII	ACRYGT	1 cut(s)	1015
AgsI	TTSAA	6 cut(s)	185, 278, 541, 1034, 1114, 1165
AjnI	CCWGG	3 cut(s)	189, 478, 797
AluBI	AGCT	8 cut(s)	95, 158, 201, 613, 727, 892, 922, 1145
AluI	AGCT	8 cut(s)	95, 158, 201, 613, 727, 892, 922, 1145
Alw21I	GWGCWC	1 cut(s)	894
Alw26I	GTCTC	3 cut(s)	1006, 1040, 1097
AoxI	GGCC	2 cut(s)	165, 1124
ApeKI	GCWGC	5 cut(s)	67, 782, 812, 995, 1003
ApoI	RAATTY	1 cut(s)	840
AspS9I	GGNCC	3 cut(s)	30, 473, 1079
AsuHPI	GGTGA	1 cut(s)	692
AvaII	GGWCC	3 cut(s)	30, 473, 1079
AxyI	CCTNAGG	2 cut(s)	1056, 1071
BaeI	ACNNNNGTAYC	2 cut(s)	949, 982
BalI	TGGCCA	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	894
BbsI	GAAGAC	2 cut(s)	761, 1041
Bbv12I	GWGCWC	1 cut(s)	894
BbvI	GCAGC	5 cut(s)	79, 769, 824, 982, 1015
BccI	CCATC	5 cut(s)	83, 176, 640, 733, 737
BceAI	ACGGC	2 cut(s)	1111, 1122
BcgI	CGANNNNNNTGC	3 cut(s)	30, 966, 1000
BciT130I	CCWGG	3 cut(s)	191, 480, 799
BciVI	GTATCC	1 cut(s)	950
BcoDI	GTCTC	3 cut(s)	1006, 1040, 1097
BfaI	CTAG	1 cut(s)	618
BfrI	CTTAAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	950
BisI	GCNGC	6 cut(s)	65, 68, 783, 813, 996, 1004
BlsI	GCNGC	6 cut(s)	66, 69, 784, 814, 997, 1005
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	3 cut(s)	191, 480, 799
Bme18I	GGWCC	3 cut(s)	30, 473, 1079
BmgT120I	GGNCC	3 cut(s)	30, 473, 1079
BmiI	GGNNCC	3 cut(s)	63, 623, 1053
BmrFI	CCNGG	3 cut(s)	191, 480, 799
BmsI	GCATC	3 cut(s)	366, 560, 799
BpiI	GAAGAC	2 cut(s)	761, 1041
BpmI	CTGGAG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	851
BsaHI	GRCGYC	2 cut(s)	712, 826
BsaJI	CCNNGG	6 cut(s)	190, 449, 479, 504, 797, 798
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 455, 485, 822, 1076
Bse1I	ACTGG	2 cut(s)	439, 810
Bse21I	CCTNAGG	2 cut(s)	1056, 1071
BseBI	CCWGG	3 cut(s)	191, 480, 799
BseDI	CCNNGG	6 cut(s)	190, 449, 479, 504, 797, 798
BseGI	GGATG	3 cut(s)	748, 814, 1066
BseLI	CCNNNNNNNGG	5 cut(s)	27, 455, 485, 822, 1076
BseMII	CTCAG	3 cut(s)	597, 975, 1047
BseNI	ACTGG	2 cut(s)	439, 810
BseRI	GAGGAG	3 cut(s)	902, 929, 1058
BseXI	GCAGC	5 cut(s)	79, 769, 824, 982, 1015
Bsh1236I	CGCG	1 cut(s)	1017
BshFI	GGCC	2 cut(s)	167, 1126
BshNI	GGYRCC	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	894
BsiSI	CCGG	3 cut(s)	59, 117, 823
BslFI	GGGAC	2 cut(s)	244, 496
BslI	CCNNNNNNNGG	5 cut(s)	27, 455, 485, 822, 1076
BsmAI	GTCTC	3 cut(s)	1006, 1040, 1097
BsmBI	CGTCTC	3 cut(s)	1006, 1040, 1097
BsmFI	GGGAC	2 cut(s)	244, 496
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	167, 1126
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp143I	GATC	2 cut(s)	232, 1083
BspACI	CCGC	2 cut(s)	65, 251
BspANI	GGCC	2 cut(s)	167, 1126
BspCNI	CTCAG	3 cut(s)	596, 974, 1048
BspFNI	CGCG	1 cut(s)	1017
BspLI	GGNNCC	3 cut(s)	63, 623, 1053
BspMI	ACCTGC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	621
BspTI	CTTAAG	1 cut(s)	716
BsrI	ACTGG	2 cut(s)	439, 810
BssECI	CCNNGG	6 cut(s)	190, 449, 479, 504, 797, 798
BssMI	GATC	2 cut(s)	232, 1083
BssNI	GRCGYC	2 cut(s)	712, 826
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	3 cut(s)	191, 480, 799
Bst4CI	ACNGT	4 cut(s)	81, 450, 1051, 1178
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	2 cut(s)	712, 826
BstAFI	CTTAAG	1 cut(s)	716
BstC8I	GCNNGC	4 cut(s)	15, 501, 615, 900
BstDEI	CTNAG	4 cut(s)	583, 961, 1056, 1071
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	748, 814, 1066
BstFNI	CGCG	1 cut(s)	1017
BstKTI	GATC	2 cut(s)	235, 1086
BstMAI	GTCTC	3 cut(s)	1006, 1040, 1097
BstMBI	GATC	2 cut(s)	232, 1083
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 164, 619, 875, 904
BstNI	CCWGG	3 cut(s)	191, 480, 799
BstSCI	CCNGG	3 cut(s)	189, 478, 797
BstUI	CGCG	1 cut(s)	1017
BstV1I	GCAGC	5 cut(s)	79, 769, 824, 982, 1015
BstV2I	GAAGAC	2 cut(s)	761, 1041
Bsu36I	CCTNAGG	2 cut(s)	1056, 1071
BsuI	GTATCC	1 cut(s)	950
BsuRI	GGCC	2 cut(s)	167, 1126
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	3 cut(s)	748, 814, 1066
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	84, 405
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	4 cut(s)	15, 501, 615, 900
Cfr13I	GGNCC	3 cut(s)	30, 473, 1079
CseI	GACGC	4 cut(s)	668, 701, 815, 1023
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	8 cut(s)	143, 239, 406, 626, 698, 817, 880, 1000
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	4 cut(s)	583, 961, 1056, 1071
DpnI	GATC	2 cut(s)	234, 1085
DpnII	GATC	2 cut(s)	232, 1083
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	892
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	894
Eco47I	GGWCC	3 cut(s)	30, 473, 1079
Eco53kI	GAGCTC	1 cut(s)	892
Eco81I	CCTNAGG	2 cut(s)	1056, 1071
EcoICRI	GAGCTC	1 cut(s)	892
EcoRI	GAATTC	1 cut(s)	840
EcoRII	CCWGG	3 cut(s)	189, 478, 797
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	3 cut(s)	1006, 1040, 1097
FaeI	CATG	8 cut(s)	146, 242, 409, 629, 701, 820, 883, 1003
FaqI	GGGAC	2 cut(s)	244, 496
FatI	CATG	8 cut(s)	142, 238, 405, 625, 697, 816, 879, 999
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	6 cut(s)	65, 68, 783, 813, 996, 1004
FokI	GGATG	3 cut(s)	755, 821, 1073
FriOI	GRGCYC	1 cut(s)	894
Fsp4HI	GCNGC	6 cut(s)	65, 68, 783, 813, 996, 1004
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	6 cut(s)	65, 68, 783, 813, 996, 1004
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	167, 1126
HapII	CCGG	3 cut(s)	59, 117, 823
HgaI	GACGC	4 cut(s)	668, 701, 815, 1023
Hin1I	GRCGYC	2 cut(s)	712, 826
Hin1II	CATG	8 cut(s)	146, 242, 409, 629, 701, 820, 883, 1003
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	3 cut(s)	222, 278, 581
HpaII	CCGG	3 cut(s)	59, 117, 823
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	4 cut(s)	84, 674, 764, 943
Hpy188I	TCNGA	4 cut(s)	7, 232, 586, 970
Hpy188III	TCNNGA	3 cut(s)	338, 830, 1055
Hpy8I	GTNNAC	4 cut(s)	84, 674, 764, 943
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	592, 677, 947
HpyCH4III	ACNGT	4 cut(s)	81, 450, 1051, 1178
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	8 cut(s)	315, 515, 525, 629, 785, 812, 987, 1003
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 164, 619, 875, 904
HpyF3I	CTNAG	4 cut(s)	583, 961, 1056, 1071
HpySE526I	ACGT	1 cut(s)	676
Hsp92I	GRCGYC	2 cut(s)	712, 826
Hsp92II	CATG	8 cut(s)	146, 242, 409, 629, 701, 820, 883, 1003
Kzo9I	GATC	2 cut(s)	232, 1083
LmnI	GCTCC	7 cut(s)	22, 61, 92, 198, 825, 889, 897
Lsp1109I	GCAGC	5 cut(s)	79, 769, 824, 982, 1015
LweI	GCATC	3 cut(s)	366, 560, 799
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	2 cut(s)	121, 1151
MalI	GATC	2 cut(s)	234, 1085
MboI	GATC	2 cut(s)	232, 1083
MboII	GAAGA	6 cut(s)	160, 766, 785, 1046, 1106, 1126
MhlI	GDGCHC	1 cut(s)	894
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	4 cut(s)	179, 654, 663, 840
MluI	ACGCGT	1 cut(s)	1015
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	231, 575
MmeI	TCCRAC	2 cut(s)	30, 1057
MnlI	CCTC	7 cut(s)	486, 861, 880, 907, 985, 1036, 1051
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	3 cut(s)	345, 443, 717
MslI	CAYNNNNRTG	2 cut(s)	216, 737
Msp20I	TGGCCA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	3 cut(s)	59, 117, 823
MspR9I	CCNGG	3 cut(s)	191, 480, 799
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	3 cut(s)	191, 480, 799
MvnI	CGCG	1 cut(s)	1017
MwoI	GCNNNNNNNGC	5 cut(s)	64, 164, 619, 875, 904
NdeII	GATC	2 cut(s)	232, 1083
NlaIII	CATG	8 cut(s)	146, 242, 409, 629, 701, 820, 883, 1003
NlaIV	GGNNCC	3 cut(s)	63, 623, 1053
NmuCI	GTSAC	1 cut(s)	121
PasI	CCCWGGG	1 cut(s)	798
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	6 cut(s)	66, 69, 784, 814, 997, 1005
PleI	GAGTC	2 cut(s)	230, 575
PpsI	GAGTC	2 cut(s)	230, 575
Psp124BI	GAGCTC	1 cut(s)	894
Psp6I	CCWGG	3 cut(s)	189, 478, 797
PspGI	CCWGG	3 cut(s)	189, 478, 797
PspN4I	GGNNCC	3 cut(s)	63, 623, 1053
PspPI	GGNCC	3 cut(s)	30, 473, 1079
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	216, 737
SacI	GAGCTC	1 cut(s)	894
SaqAI	TTAA	3 cut(s)	345, 443, 717
SatI	GCNGC	6 cut(s)	65, 68, 783, 813, 996, 1004
Sau3AI	GATC	2 cut(s)	232, 1083
Sau96I	GGNCC	3 cut(s)	30, 473, 1079
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	2 cut(s)	231, 575
ScrFI	CCNGG	3 cut(s)	191, 480, 799
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	3 cut(s)	366, 560, 799
SinI	GGWCC	3 cut(s)	30, 473, 1079
SmiMI	CAYNNNNRTG	2 cut(s)	216, 737
SmlI	CTYRAG	2 cut(s)	716, 830
SmoI	CTYRAG	2 cut(s)	716, 830
Sse9I	AATT	4 cut(s)	179, 654, 663, 840
SsiI	CCGC	2 cut(s)	65, 251
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	1 cut(s)	894
StyD4I	CCNGG	3 cut(s)	189, 478, 797
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	4 cut(s)	81, 450, 1051, 1178
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	1 cut(s)	976
TaqII	GACCGA	1 cut(s)	1096
TasI	AATT	4 cut(s)	179, 654, 663, 840
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	345, 443, 717
Tru9I	TTAA	3 cut(s)	345, 443, 717
TscAI	CASTG	2 cut(s)	91, 405
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	5 cut(s)	67, 782, 812, 995, 1003
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	666, 714, 1077
TspGWI	ACGGA	3 cut(s)	90, 547, 965
TspRI	CASTG	2 cut(s)	91, 405
Van91I	CCANNNNNTGG	1 cut(s)	27
Vha464I	CTTAAG	1 cut(s)	716
VpaK11BI	GGWCC	3 cut(s)	30, 473, 1079
XapI	RAATTY	1 cut(s)	840
XcmI	CCANNNNNNNNNTGG	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	942
XspI	CTAG	1 cut(s)	618
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.