MD10G1261900.v1.1

Katanin p60 ATPase-containing subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
35619443 .. 35623726
4284 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1261900.v1.1.491

Sequence Viewer

Length: 1179 bp
ATGTCCGACGAGCCTGCTCCCAGTCGCTGGTCCTTTCAGTTTGGTAGAAAAAAAGCACCGGAGCCGCAGCAAAACGGGCAGTCCACTAATGGAGATGTGAGTAATGGAAGTAGTTCCGGAGTGACCGCGAAGAGGACAGCTGACTTGGCCATCTACGAGCAATTTCAAAACCAGGGTAGGGGCTCCGTGCCTCACTCAAATGGAGTCTTAACTGATCAGCATGATGAGATACCGCAGAAGTCCCTTTTACCTGCTTTTGAATCAGCAGAAATGCGTTCTTTAGGAGAGAGTTTATGCAGGGATATAATTCGGGGTAGTCCAGATGTTAAGTGGGAAAGCATCAAGGGATTAGAGAATGCCAAGCGTTTGCTCAAAGAAGCAGTGGTCATGCCAATCAAATATCCCAAGTACTTTACTGGACTTTTAACACCGTGGAAAGGTATTCTCCTTTTTGGACCTCCAGGGACAGGAAAGACAATGCTTGCCAAGGCTGTTGCAACAGAGTGCAAGACCACATTTTTCAACATTTCAGCATCATCTGTTGTCAGTAAATGGCGCGGCGACTCAGAGAAGTTAGTGAAGGTGTTATTTGAGCTTGCTAGGCATCATGCGCCATCAACTATATTTATTGATGAAATTGACGCAATTATTAGTCAACGTGGTGAAGGACGAAGTGAGCATGAAGCAAGTAGGCGTCTGAAGACAGAGCTACTCGTACAGATGGATGGTTTGACGAAGACAAGTGAACTTGTTTTTGTTTTGGCTGCTACAAATCTTCCCTGGGAACTGGATGCAGCCATGCTCCGGCGTCTTGAGAAGCGAATTCTTGTGCCTCTGCCTGAACCAGAAGCAAGAAGAGCAATGTTCGAGGAGCTCCTGCCAGTACAGCCTGATGAGGAGAAGCTTCCTTATGATTTGTTGGTGGATAAAACTGAAGGATATTCAGGTTCAGATATTCGATTGGTGTGCAAGGAGGCTGCTATGCAGCCTCTGAGACGCATAATGACATTCCTTGAAGACAAAGAGGACACGGTTCCTGAGGATGAACTGCCCAAGGTTGGACCGATCAAACACGAAGATATTGAGACGGCTTTGAAGAACACAAGGCCGTCTGCTCATCTCCAAGCTCATCGTTATGAGAAGTTCAATGCTGATTATGGTAGTCAAATACTCCAATGA

Protein Analysis

393

Amino Acids

43.89

Weight (kDa)

6.0

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 148 - 279 2e-41 ATPase family associated with various cellular activities (AAA)
RuvB_N PF05496 148 - 216 4e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA_lid_3 PF17862 305 - 341 3.6e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 259
AccB7I CCANNNNNTGG 1 cut(s) 27
AccII CGCG 2 cut(s) 128, 558
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 4 cut(s) 65, 126, 233, 558
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 822
AcuI CTGAAG 2 cut(s) 719, 954
AcyI GRCGYC 2 cut(s) 694, 808
AfaI GTAC 3 cut(s) 410, 717, 885
AfiI CCNNNNNNNGG 7 cut(s) 27, 132, 178, 437, 467, 804, 1058
AgsI TTSAA 6 cut(s) 167, 260, 523, 1016, 1096, 1147
AjnI CCWGG 3 cut(s) 171, 460, 779
AluBI AGCT 6 cut(s) 140, 595, 709, 874, 904, 1127
AluI AGCT 6 cut(s) 140, 595, 709, 874, 904, 1127
Alw21I GWGCWC 1 cut(s) 876
Alw26I GTCTC 2 cut(s) 988, 1079
AlwNI CAGNNNCTG 2 cut(s) 27, 991
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 2 cut(s) 147, 1106
ApeKI GCWGC 5 cut(s) 67, 764, 794, 977, 985
ApoI RAATTY 1 cut(s) 822
Asp700I GAANNNNTTC 1 cut(s) 112
AspLEI GCGC 2 cut(s) 558, 613
AspS9I GGNCC 3 cut(s) 30, 455, 1061
AsuHPI GGTGA 1 cut(s) 674
AvaII GGWCC 3 cut(s) 30, 455, 1061
AxyI CCTNAGG 1 cut(s) 1038
BalI TGGCCA 1 cut(s) 149
BanII GRGCYC 2 cut(s) 185, 876
BbsI GAAGAC 3 cut(s) 707, 743, 1023
Bbv12I GWGCWC 1 cut(s) 876
BbvI GCAGC 5 cut(s) 79, 751, 806, 964, 997
BccI CCATC 4 cut(s) 158, 622, 715, 719
BceAI ACGGC 2 cut(s) 1093, 1104
BcgI CGANNNNNNTGC 3 cut(s) 30, 948, 982
BciT130I CCWGG 3 cut(s) 173, 462, 781
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 988, 1079
BfaI CTAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 7 cut(s) 65, 68, 559, 765, 795, 978, 986
BlsI GCNGC 7 cut(s) 66, 69, 560, 766, 796, 979, 987
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 3 cut(s) 173, 462, 781
Bme18I GGWCC 3 cut(s) 30, 455, 1061
BmgT120I GGNCC 3 cut(s) 30, 455, 1061
BmiI GGNNCC 3 cut(s) 63, 184, 1035
BmrFI CCNGG 3 cut(s) 173, 462, 781
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 4 cut(s) 348, 542, 613, 781
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 3 cut(s) 707, 743, 1023
BpmI CTGGAG 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 833
BsaHI GRCGYC 2 cut(s) 694, 808
BsaJI CCNNGG 7 cut(s) 172, 431, 461, 486, 779, 780, 1053
BsaWI WCCGGW 2 cut(s) 58, 116
Bsc4I CCNNNNNNNGG 7 cut(s) 27, 132, 178, 437, 467, 804, 1058
Bse1I ACTGG 4 cut(s) 21, 421, 792, 881
Bse21I CCTNAGG 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 867
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 3 cut(s) 173, 462, 781
BseDI CCNNGG 7 cut(s) 172, 431, 461, 486, 779, 780, 1053
BseGI GGATG 3 cut(s) 730, 796, 1048
BseLI CCNNNNNNNGG 7 cut(s) 27, 132, 178, 437, 467, 804, 1058
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 3 cut(s) 579, 983, 1029
BseNI ACTGG 4 cut(s) 21, 421, 792, 881
BseRI GAGGAG 2 cut(s) 884, 911
BseXI GCAGC 5 cut(s) 79, 751, 806, 964, 997
Bsh1236I CGCG 2 cut(s) 128, 558
BshFI GGCC 2 cut(s) 149, 1108
BsiHKAI GWGCWC 1 cut(s) 876
BsiSI CCGG 3 cut(s) 59, 117, 805
BslFI GGGAC 2 cut(s) 226, 478
BslI CCNNNNNNNGG 7 cut(s) 27, 132, 178, 437, 467, 804, 1058
BsmAI GTCTC 2 cut(s) 988, 1079
BsmBI CGTCTC 2 cut(s) 988, 1079
BsmFI GGGAC 2 cut(s) 226, 478
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 2 cut(s) 149, 1108
Bsp1286I GDGCHC 2 cut(s) 185, 876
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 2 cut(s) 214, 1065
BspACI CCGC 4 cut(s) 65, 126, 233, 558
BspANI GGCC 2 cut(s) 149, 1108
BspCNI CTCAG 3 cut(s) 578, 984, 1030
BspEI TCCGGA 1 cut(s) 116
BspFNI CGCG 2 cut(s) 128, 558
BspLI GGNNCC 3 cut(s) 63, 184, 1035
BspMI ACCTGC 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 850
BsrDI GCAATG 1 cut(s) 867
BsrI ACTGG 4 cut(s) 21, 421, 792, 881
BssECI CCNNGG 7 cut(s) 172, 431, 461, 486, 779, 780, 1053
BssMI GATC 2 cut(s) 214, 1065
BssNI GRCGYC 2 cut(s) 694, 808
BssT1I CCWWGG 2 cut(s) 486, 1053
Bst2UI CCWGG 3 cut(s) 173, 462, 781
Bst4CI ACNGT 2 cut(s) 432, 1033
Bst6I CTCTTC 2 cut(s) 125, 850
BstACI GRCGYC 2 cut(s) 694, 808
BstC8I GCNNGC 3 cut(s) 15, 483, 597
BstDEI CTNAG 3 cut(s) 565, 992, 1038
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 3 cut(s) 730, 796, 1048
BstFNI CGCG 2 cut(s) 128, 558
BstHHI GCGC 2 cut(s) 558, 613
BstKTI GATC 2 cut(s) 217, 1068
BstMAI GTCTC 2 cut(s) 988, 1079
BstMBI GATC 2 cut(s) 214, 1065
BstMWI GCNNNNNNNGC 6 cut(s) 76, 146, 601, 610, 857, 886
BstNI CCWGG 3 cut(s) 173, 462, 781
BstSCI CCNGG 3 cut(s) 171, 460, 779
BstUI CGCG 2 cut(s) 128, 558
BstV1I GCAGC 5 cut(s) 79, 751, 806, 964, 997
BstV2I GAAGAC 3 cut(s) 707, 743, 1023
Bsu36I CCTNAGG 1 cut(s) 1038
BsuRI GGCC 2 cut(s) 149, 1108
BtgI CCRYGG 1 cut(s) 431
BtsCI GGATG 3 cut(s) 730, 796, 1048
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 387
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 3 cut(s) 15, 483, 597
CaiI CAGNNNCTG 2 cut(s) 27, 991
CfoI GCGC 2 cut(s) 558, 613
Cfr13I GGNCC 3 cut(s) 30, 455, 1061
CseI GACGC 4 cut(s) 650, 683, 797, 1005
Csp6I GTAC 3 cut(s) 409, 716, 884
CviAII CATG 5 cut(s) 221, 388, 608, 680, 799
CviQI GTAC 3 cut(s) 409, 716, 884
DdeI CTNAG 3 cut(s) 565, 992, 1038
DpnI GATC 2 cut(s) 216, 1067
DpnII GATC 2 cut(s) 214, 1065
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 125, 850
EarI CTCTTC 2 cut(s) 125, 850
Ecl136II GAGCTC 1 cut(s) 874
Eco130I CCWWGG 2 cut(s) 486, 1053
Eco24I GRGCYC 2 cut(s) 185, 876
Eco47I GGWCC 3 cut(s) 30, 455, 1061
Eco53kI GAGCTC 1 cut(s) 874
Eco57I CTGAAG 2 cut(s) 719, 954
Eco81I CCTNAGG 1 cut(s) 1038
EcoICRI GAGCTC 1 cut(s) 874
EcoRI GAATTC 1 cut(s) 822
EcoRII CCWGG 3 cut(s) 171, 460, 779
EcoT14I CCWWGG 2 cut(s) 486, 1053
EcoT38I GRGCYC 2 cut(s) 185, 876
ErhI CCWWGG 2 cut(s) 486, 1053
Esp3I CGTCTC 2 cut(s) 988, 1079
FaeI CATG 5 cut(s) 224, 391, 611, 683, 802
FaqI GGGAC 2 cut(s) 226, 478
FatI CATG 5 cut(s) 220, 387, 607, 679, 798
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 7 cut(s) 65, 68, 559, 765, 795, 978, 986
FokI GGATG 3 cut(s) 737, 803, 1055
FriOI GRGCYC 2 cut(s) 185, 876
Fsp4HI GCNGC 7 cut(s) 65, 68, 559, 765, 795, 978, 986
FspBI CTAG 1 cut(s) 600
GlaI GCGC 2 cut(s) 557, 612
GluI GCNGC 7 cut(s) 65, 68, 559, 765, 795, 978, 986
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 2 cut(s) 149, 1108
HapII CCGG 3 cut(s) 59, 117, 805
HgaI GACGC 4 cut(s) 650, 683, 797, 1005
HhaI GCGC 2 cut(s) 558, 613
Hin1I GRCGYC 2 cut(s) 694, 808
Hin1II CATG 5 cut(s) 224, 391, 611, 683, 802
Hin6I GCGC 2 cut(s) 556, 611
HinP1I GCGC 2 cut(s) 556, 611
HincII GTYRAC 1 cut(s) 656
HindII GTYRAC 1 cut(s) 656
HindIII AAGCTT 1 cut(s) 902
HinfI GANTC 3 cut(s) 204, 260, 563
HpaII CCGG 3 cut(s) 59, 117, 805
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 3 cut(s) 84, 656, 746
Hpy188I TCNGA 5 cut(s) 7, 568, 699, 952, 993
Hpy188III TCNNGA 4 cut(s) 117, 320, 812, 1037
Hpy8I GTNNAC 3 cut(s) 84, 656, 746
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 574, 659, 929
HpyCH4III ACNGT 2 cut(s) 432, 1033
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 6 cut(s) 297, 497, 507, 794, 969, 985
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 146, 601, 610, 857, 886
HpyF3I CTNAG 3 cut(s) 565, 992, 1038
HpySE526I ACGT 1 cut(s) 658
Hsp92I GRCGYC 2 cut(s) 694, 808
Hsp92II CATG 5 cut(s) 224, 391, 611, 683, 802
HspAI GCGC 2 cut(s) 556, 611
Kpn2I TCCGGA 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 214, 1065
LguI GCTCTTC 1 cut(s) 850
LmnI GCTCC 6 cut(s) 22, 61, 188, 807, 871, 879
Lsp1109I GCAGC 5 cut(s) 79, 751, 806, 964, 997
LweI GCATC 4 cut(s) 348, 542, 613, 781
MaeI CTAG 1 cut(s) 600
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 1 cut(s) 121
MalI GATC 2 cut(s) 216, 1067
MboI GATC 2 cut(s) 214, 1065
MboII GAAGA 8 cut(s) 142, 712, 748, 767, 867, 1028, 1088, 1108
MhlI GDGCHC 2 cut(s) 185, 876
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 5 cut(s) 161, 306, 636, 645, 822
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 2 cut(s) 213, 557
MmeI TCCRAC 2 cut(s) 30, 1039
Mox20I TGGCCA 1 cut(s) 149
MroI TCCGGA 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 112
MscI TGGCCA 1 cut(s) 149
MseI TTAA 3 cut(s) 209, 327, 425
MslI CAYNNNNRTG 2 cut(s) 198, 1134
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 3 cut(s) 59, 117, 805
MspR9I CCNGG 3 cut(s) 173, 462, 781
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 3 cut(s) 173, 462, 781
MvnI CGCG 2 cut(s) 128, 558
MwoI GCNNNNNNNGC 6 cut(s) 76, 146, 601, 610, 857, 886
NdeII GATC 2 cut(s) 214, 1065
NlaIII CATG 5 cut(s) 224, 391, 611, 683, 802
NlaIV GGNNCC 3 cut(s) 63, 184, 1035
NmuCI GTSAC 1 cut(s) 121
PasI CCCWGGG 1 cut(s) 780
PciSI GCTCTTC 1 cut(s) 850
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 27
PkrI GCNGC 7 cut(s) 66, 69, 560, 766, 796, 979, 987
PleI GAGTC 2 cut(s) 212, 557
PpsI GAGTC 2 cut(s) 212, 557
Psp124BI GAGCTC 1 cut(s) 876
Psp6I CCWGG 3 cut(s) 171, 460, 779
PspGI CCWGG 3 cut(s) 171, 460, 779
PspN4I GGNNCC 3 cut(s) 63, 184, 1035
PspPI GGNCC 3 cut(s) 30, 455, 1061
PstNI CAGNNNCTG 2 cut(s) 27, 991
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 3 cut(s) 410, 717, 885
RsaNI GTAC 3 cut(s) 409, 716, 884
RseI CAYNNNNRTG 2 cut(s) 198, 1134
SacI GAGCTC 1 cut(s) 876
SapI GCTCTTC 1 cut(s) 850
SaqAI TTAA 3 cut(s) 209, 327, 425
SatI GCNGC 7 cut(s) 65, 68, 559, 765, 795, 978, 986
Sau3AI GATC 2 cut(s) 214, 1065
Sau96I GGNCC 3 cut(s) 30, 455, 1061
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 2 cut(s) 213, 557
ScrFI CCNGG 3 cut(s) 173, 462, 781
SduI GDGCHC 2 cut(s) 185, 876
SfaNI GCATC 4 cut(s) 348, 542, 613, 781
SinI GGWCC 3 cut(s) 30, 455, 1061
SmiMI CAYNNNNRTG 2 cut(s) 198, 1134
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
Sse9I AATT 5 cut(s) 161, 306, 636, 645, 822
SsiI CCGC 4 cut(s) 65, 126, 233, 558
SspMI CTAG 1 cut(s) 600
SstI GAGCTC 1 cut(s) 876
StyD4I CCNGG 3 cut(s) 171, 460, 779
StyI CCWWGG 2 cut(s) 486, 1053
TaaI ACNGT 2 cut(s) 432, 1033
TaiI ACGT 1 cut(s) 661
TaqI TCGA 2 cut(s) 867, 958
TaqII GACCGA 1 cut(s) 1078
TasI AATT 5 cut(s) 161, 306, 636, 645, 822
TatI WGTACW 2 cut(s) 408, 883
TauI GCSGC 2 cut(s) 67, 561
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 3 cut(s) 209, 327, 425
Tru9I TTAA 3 cut(s) 209, 327, 425
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 5 cut(s) 67, 764, 794, 977, 985
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 648, 696, 1059
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 387
Van91I CCANNNNNTGG 1 cut(s) 27
VpaK11BI GGWCC 3 cut(s) 30, 455, 1061
XapI RAATTY 1 cut(s) 822
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 1 cut(s) 600
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.