Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000120.1

Orthogroup ID

OG0002713

Physical Location & Seq

Genomic Coordinates Reverse (-)

26032 .. 31102

Gene Structure 5071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000120.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgtccgatgagccatcaatcactcgatggacctttccgtttggtagaaagaaagtgtcggaggaaacgcaaagtgagcaggcagccactaatggagctgtgagtaatgggggagcttcggacgccacagtgaatgggaatggttatgtgaaaaaccaagctgacttggccatctatgagcgatatcgaaaccaggaagctgcacagtcgagtggagtttcatctgagccaaatcatgtgatcccgaaatctttgcttcctgcttttgactctgcagaaacacgttcattagcagagagtttatgcagggatatagttcgtggtgatccggatgttaagtgggaaaccattaaggggttagagaatgctaaacgtttacttaaagaagcagtggtcatgccgattaagtatcccaagtactttactggtctcttatcaccttggaaaggtattctcctttttggccctccagggacaggaaagactatgcttgcgaaggctgttgcaacagagtgcaagaccacatttttcaacatttcagcatcatcagttgtcagtaaatggcgtggtgactcagagaagttagtgaaggtgttatttgagctcgccaggcaccatgcaccctcaactatatttattgacgaaattgatgcaattattagtcaacgtggtggtgaagcacgaagtgagcatgaagcaagtaggcgtttgaaaacggagcttctgatacagatggatggtttgatgaagacaaatgaactagtgtttgttttggccgcaacaaatcttccttgggaactagatgcagccatgctccggcgtcttgaaaaacgaattcttgtgcctctgcctgaacctgaagcacggagagccatgtttgaggagctcctgccagtagagcctggtgaggaggagcttccttatgatttgttggtggataagacagaaggatattcaggttctgatattaggctggtgtgcaaggaggctgccatgcagcccctgagacgcctaatgacactccttgaagacaaagaggaagtggtgcctgaggatgaactgcctaaggttggaccaatcaaacatgatgacattgagacagctttgaagaacacaaggccatctgctcatctccaggctcatcgttatgagaagttcaatgctgattacggcagtcaaatactccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0015630 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

396

Amino Acids

44.18

Weight (kDa)

5.52

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34560 AT2G34560
fragaria_vesca	FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g24600
malus_domestica	MD05G1283700.v1.1 MD10G1261900.v1.1 MD11G1161400.v1.1 MD17G1012100.v1.1
prunus_persica	Prupe.4G080800_v2.0.a1 Prupe.4G080800_v2.0.a1 Prupe.6G127100_v2.0.a1
pyrus_communis	pycom05g26280 pycom07g21360 pycom10g21820 pycom11g13380
rosa_chinensis	RchiOBHm_Chr5g0014221 RchiOBHm_Chr5g0044151
rosa_laevigata	RLG00000032091 RLG00000034247
rosa_multiflora	Rmu_sc0000939.1_g000032 Rmu_sc0014980.1_g000003 Rmu_ssc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036900 Rroxscaffold_1G00062360
rosa_rugosa	Rorug05G0016300 Rorug05G0210900 Rorug05G0211000
rosa_samantha	Rh5AG295800 Rh5BG303600 Rh5CG119300 Rh5CG330600 Rh5DG312400
rosa_wichuraiana	Rw5G009640 Rw5G027350 Rw5G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	612, 1045
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	1 cut(s)	777
AclI	AACGTT	1 cut(s)	373
AclWI	GGATC	2 cut(s)	235, 320
AcoI	YGGCCR	2 cut(s)	168, 774
AcsI	RAATTY	1 cut(s)	834
AcuI	CTGAAG	1 cut(s)	879
AcyI	GRCGYC	3 cut(s)	123, 820, 1009
AdeI	CACNNNGTG	1 cut(s)	686
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	5 cut(s)	354, 446, 476, 816, 1070
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	6 cut(s)	532, 712, 827, 1028, 1108, 1159
AhlI	ACTAGT	1 cut(s)	760
AjnI	CCWGG	5 cut(s)	192, 469, 608, 901, 1134
AluBI	AGCT	9 cut(s)	98, 116, 161, 200, 604, 721, 886, 916, 1103
AluI	AGCT	9 cut(s)	98, 116, 161, 200, 604, 721, 886, 916, 1103
Alw21I	GWGCWC	2 cut(s)	606, 888
Alw26I	GTCTC	3 cut(s)	434, 1000, 1091
AlwI	GGATC	2 cut(s)	235, 320
AlwNI	CAGNNNCTG	2 cut(s)	962, 1003
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	4 cut(s)	168, 463, 774, 1118
ApeKI	GCWGC	5 cut(s)	83, 200, 806, 989, 997
ApoI	RAATTY	1 cut(s)	834
AspS9I	GGNCC	3 cut(s)	30, 464, 1073
AsuHPI	GGTGA	5 cut(s)	335, 429, 581, 686, 917
AvaII	GGWCC	2 cut(s)	30, 1073
AxyI	CCTNAGG	2 cut(s)	1050, 1065
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	2 cut(s)	612, 1045
BanII	GRGCYC	2 cut(s)	606, 888
BbsI	GAAGAC	2 cut(s)	755, 1035
Bbv12I	GWGCWC	2 cut(s)	606, 888
BbvI	GCAGC	5 cut(s)	95, 187, 818, 976, 1009
BccI	CCATC	6 cut(s)	21, 22, 179, 727, 731, 1129
BceAI	ACGGC	1 cut(s)	1186
BcgI	CGANNNNNNTGC	4 cut(s)	235, 269, 632, 666
BciT130I	CCWGG	5 cut(s)	194, 471, 610, 903, 1136
BciVI	GTATCC	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	434, 1000, 1091
BcuI	ACTAGT	1 cut(s)	760
BfaI	CTAG	2 cut(s)	761, 800
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	6 cut(s)	84, 201, 777, 807, 990, 998
BlsI	GCNGC	6 cut(s)	85, 202, 778, 808, 991, 999
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	5 cut(s)	194, 471, 610, 903, 1136
Bme18I	GGWCC	2 cut(s)	30, 1073
BmgT120I	GGNCC	3 cut(s)	30, 464, 1073
BmiI	GGNNCC	2 cut(s)	614, 1047
BmrFI	CCNGG	5 cut(s)	194, 471, 610, 903, 1136
BmsI	GCATC	3 cut(s)	551, 640, 793
BpiI	GAAGAC	2 cut(s)	755, 1035
BpmI	CTGGAG	2 cut(s)	453, 1118
BsaHI	GRCGYC	3 cut(s)	123, 820, 1009
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	440, 470, 791
BsaWI	WCCGGW	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	5 cut(s)	354, 446, 476, 816, 1070
Bse1I	ACTGG	2 cut(s)	430, 893
Bse21I	CCTNAGG	2 cut(s)	1050, 1065
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	5 cut(s)	194, 471, 610, 903, 1136
BseDI	CCNNGG	3 cut(s)	440, 470, 791
BseGI	GGATG	3 cut(s)	337, 742, 1060
BseLI	CCNNNNNNNGG	5 cut(s)	354, 446, 476, 816, 1070
BseMII	CTCAG	4 cut(s)	216, 588, 995, 1041
BseNI	ACTGG	2 cut(s)	430, 893
BseRI	GAGGAG	3 cut(s)	896, 923, 926
BseXI	GCAGC	5 cut(s)	95, 187, 818, 976, 1009
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	4 cut(s)	170, 465, 776, 1120
BshNI	GGYRCC	2 cut(s)	612, 1045
BsiHKAI	GWGCWC	2 cut(s)	606, 888
BsiSI	CCGG	2 cut(s)	329, 817
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	5 cut(s)	354, 446, 476, 816, 1070
BsmAI	GTCTC	3 cut(s)	434, 1000, 1091
BsmBI	CGTCTC	1 cut(s)	1000
BsmFI	GGGAC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	4 cut(s)	170, 465, 776, 1120
Bso31I	GGTCTC	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	606, 888
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	240, 325
BspACI	CCGC	1 cut(s)	777
BspANI	GGCC	4 cut(s)	170, 465, 776, 1120
BspCNI	CTCAG	4 cut(s)	217, 587, 996, 1042
BspEI	TCCGGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	614, 1047
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	2 cut(s)	235, 320
BspT107I	GGYRCC	2 cut(s)	612, 1045
BspTNI	GGTCTC	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	430, 893
BssECI	CCNNGG	3 cut(s)	440, 470, 791
BssMI	GATC	2 cut(s)	240, 325
BssNI	GRCGYC	3 cut(s)	123, 820, 1009
BssT1I	CCWWGG	2 cut(s)	440, 791
Bst2UI	CCWGG	5 cut(s)	194, 471, 610, 903, 1136
Bst4CI	ACNGT	2 cut(s)	130, 207
BstACI	GRCGYC	3 cut(s)	123, 820, 1009
BstC8I	GCNNGC	3 cut(s)	81, 492, 606
BstDEI	CTNAG	5 cut(s)	225, 574, 1004, 1050, 1065
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstF5I	GGATG	3 cut(s)	337, 742, 1060
BstKTI	GATC	2 cut(s)	243, 328
BstMAI	GTCTC	3 cut(s)	434, 1000, 1091
BstMBI	GATC	2 cut(s)	240, 325
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 122, 167, 610, 869, 898
BstNI	CCWGG	5 cut(s)	194, 471, 610, 903, 1136
BstSCI	CCNGG	5 cut(s)	192, 469, 608, 901, 1134
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	95, 187, 818, 976, 1009
BstV2I	GAAGAC	2 cut(s)	755, 1035
Bsu36I	CCTNAGG	2 cut(s)	1050, 1065
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	4 cut(s)	170, 465, 776, 1120
BtsCI	GGATG	3 cut(s)	337, 742, 1060
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	135, 396
Cac8I	GCNNGC	3 cut(s)	81, 492, 606
CaiI	CAGNNNCTG	2 cut(s)	962, 1003
Cfr13I	GGNCC	3 cut(s)	30, 464, 1073
CseI	GACGC	3 cut(s)	131, 809, 1017
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	8 cut(s)	236, 397, 617, 692, 811, 874, 994, 1085
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	5 cut(s)	225, 574, 1004, 1050, 1065
DpnI	GATC	2 cut(s)	242, 327
DpnII	GATC	2 cut(s)	240, 325
DraIII	CACNNNGTG	1 cut(s)	686
EaeI	YGGCCR	2 cut(s)	168, 774
Ecl136II	GAGCTC	2 cut(s)	604, 886
Eco130I	CCWWGG	2 cut(s)	440, 791
Eco24I	GRGCYC	2 cut(s)	606, 888
Eco31I	GGTCTC	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	30, 1073
Eco53kI	GAGCTC	2 cut(s)	604, 886
Eco57I	CTGAAG	1 cut(s)	879
Eco81I	CCTNAGG	2 cut(s)	1050, 1065
EcoICRI	GAGCTC	2 cut(s)	604, 886
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoRI	GAATTC	1 cut(s)	834
EcoRII	CCWGG	5 cut(s)	192, 469, 608, 901, 1134
EcoRV	GATATC	1 cut(s)	185
EcoT14I	CCWWGG	2 cut(s)	440, 791
EcoT38I	GRGCYC	2 cut(s)	606, 888
ErhI	CCWWGG	2 cut(s)	440, 791
Esp3I	CGTCTC	1 cut(s)	1000
FaeI	CATG	8 cut(s)	239, 400, 620, 695, 814, 877, 997, 1088
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	8 cut(s)	235, 396, 616, 691, 810, 873, 993, 1084
Fnu4HI	GCNGC	6 cut(s)	84, 201, 777, 807, 990, 998
FokI	GGATG	3 cut(s)	344, 749, 1067
FriOI	GRGCYC	2 cut(s)	606, 888
Fsp4HI	GCNGC	6 cut(s)	84, 201, 777, 807, 990, 998
FspBI	CTAG	2 cut(s)	761, 800
GluI	GCNGC	6 cut(s)	84, 201, 777, 807, 990, 998
GsuI	CTGGAG	2 cut(s)	453, 1118
HaeIII	GGCC	4 cut(s)	170, 465, 776, 1120
HapII	CCGG	2 cut(s)	329, 817
HgaI	GACGC	3 cut(s)	131, 809, 1017
Hin1I	GRCGYC	3 cut(s)	123, 820, 1009
Hin1II	CATG	8 cut(s)	239, 400, 620, 695, 814, 877, 997, 1088
HincII	GTYRAC	1 cut(s)	665
HindII	GTYRAC	1 cut(s)	665
HinfI	GANTC	2 cut(s)	269, 572
HpaII	CCGG	2 cut(s)	329, 817
HphI	GGTGA	5 cut(s)	335, 429, 581, 686, 917
Hpy166II	GTNNAC	2 cut(s)	377, 665
Hpy188I	TCNGA	7 cut(s)	7, 61, 121, 226, 577, 726, 964
Hpy188III	TCNNGA	3 cut(s)	244, 329, 824
Hpy8I	GTNNAC	2 cut(s)	377, 665
HpyAV	CCTTC	3 cut(s)	490, 583, 941
HpyCH4III	ACNGT	2 cut(s)	130, 207
HpyCH4IV	ACGT	3 cut(s)	283, 373, 667
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 122, 167, 610, 869, 898
HpyF3I	CTNAG	5 cut(s)	225, 574, 1004, 1050, 1065
HpySE526I	ACGT	3 cut(s)	283, 373, 667
Hsp92I	GRCGYC	3 cut(s)	123, 820, 1009
Hsp92II	CATG	8 cut(s)	239, 400, 620, 695, 814, 877, 997, 1088
Kpn2I	TCCGGA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	240, 325
LmnI	GCTCC	7 cut(s)	95, 113, 718, 819, 883, 891, 913
Lsp1109I	GCAGC	5 cut(s)	95, 187, 818, 976, 1009
LweI	GCATC	3 cut(s)	551, 640, 793
MaeI	CTAG	2 cut(s)	761, 800
MaeII	ACGT	3 cut(s)	283, 373, 667
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	2 cut(s)	242, 327
MboI	GATC	2 cut(s)	240, 325
MboII	GAAGA	4 cut(s)	760, 779, 1040, 1120
MhlI	GDGCHC	2 cut(s)	606, 888
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	3 cut(s)	645, 654, 834
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	263, 566
MmeI	TCCRAC	2 cut(s)	39, 1051
Mox20I	TGGCCA	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	4 cut(s)	336, 351, 381, 405
MslI	CAYNNNNRTG	1 cut(s)	1146
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	2 cut(s)	329, 817
MspR9I	CCNGG	5 cut(s)	194, 471, 610, 903, 1136
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	5 cut(s)	194, 471, 610, 903, 1136
MwoI	GCNNNNNNNGC	6 cut(s)	76, 122, 167, 610, 869, 898
NdeII	GATC	2 cut(s)	240, 325
NlaIII	CATG	8 cut(s)	239, 400, 620, 695, 814, 877, 997, 1088
NlaIV	GGNNCC	2 cut(s)	614, 1047
NmuCI	GTSAC	1 cut(s)	569
PctI	GAATGC	1 cut(s)	370
PkrI	GCNGC	6 cut(s)	85, 202, 778, 808, 991, 999
PleI	GAGTC	2 cut(s)	263, 566
PpsI	GAGTC	2 cut(s)	263, 566
Psp124BI	GAGCTC	2 cut(s)	606, 888
Psp1406I	AACGTT	1 cut(s)	373
Psp6I	CCWGG	5 cut(s)	192, 469, 608, 901, 1134
PspGI	CCWGG	5 cut(s)	192, 469, 608, 901, 1134
PspN4I	GGNNCC	2 cut(s)	614, 1047
PspPI	GGNCC	3 cut(s)	30, 464, 1073
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	2 cut(s)	962, 1003
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	1146
SacI	GAGCTC	2 cut(s)	606, 888
SaqAI	TTAA	4 cut(s)	336, 351, 381, 405
SatI	GCNGC	6 cut(s)	84, 201, 777, 807, 990, 998
Sau3AI	GATC	2 cut(s)	240, 325
Sau96I	GGNCC	3 cut(s)	30, 464, 1073
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	2 cut(s)	263, 566
ScrFI	CCNGG	5 cut(s)	194, 471, 610, 903, 1136
SduI	GDGCHC	2 cut(s)	606, 888
SfaNI	GCATC	3 cut(s)	551, 640, 793
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	2 cut(s)	30, 1073
SmiMI	CAYNNNNRTG	1 cut(s)	1146
SpeI	ACTAGT	1 cut(s)	760
Sse9I	AATT	3 cut(s)	645, 654, 834
SsiI	CCGC	1 cut(s)	777
SspMI	CTAG	2 cut(s)	761, 800
SstI	GAGCTC	2 cut(s)	606, 888
StyD4I	CCNGG	5 cut(s)	192, 469, 608, 901, 1134
StyI	CCWWGG	2 cut(s)	440, 791
TaaI	ACNGT	2 cut(s)	130, 207
TaiI	ACGT	3 cut(s)	286, 376, 670
TaqI	TCGA	3 cut(s)	25, 187, 209
TasI	AATT	3 cut(s)	645, 654, 834
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	779
Tru1I	TTAA	4 cut(s)	336, 351, 381, 405
Tru9I	TTAA	4 cut(s)	336, 351, 381, 405
TscAI	CASTG	2 cut(s)	135, 396
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	5 cut(s)	83, 200, 806, 989, 997
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	6 cut(s)	210, 276, 708, 761, 771, 1071
TspGWI	ACGGA	3 cut(s)	27, 731, 880
TspRI	CASTG	2 cut(s)	135, 396
VpaK11BI	GGWCC	2 cut(s)	30, 1073
XagI	CCTNNNNNAGG	1 cut(s)	444
XapI	RAATTY	1 cut(s)	834
XspI	CTAG	2 cut(s)	761, 800
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.