Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002713

Physical Location & Seq

Genomic Coordinates Reverse (-)

40499366 .. 40503865

Gene Structure 4500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGGTTTCTGGTTATATCCTGAAACTTACTATTGTCCTCACTCTTCTCTTGTTCCTTAGACTTTCTTTGGCCCATGGAGCCACTGCTGACACAAAGCACTATATTGTTTACATGGGGCACCACTCGCACACCAACTCGGAATCTGTCATCAGAGCTAACCATGAGATTCTTGCTTCAGTCACCGGCAGTACCGGTGGACAAGAAGCAGCACTTAACCATTACAGTAAAAGTTTCCAAGGCTTCTCAGCCAAGCTTACACCAGATCAAGCTCAGCAACTTGCTGAACATGATTCGGTCATTTCGGTGTTTGAGAGCAAGACAAACAAACTGAGCACAACACATTCCTGGGATTTTCTAGGCGTAGACGCTACTCCTAATTACAATCAAATGCCAATGGGTTCCAAATCCAATGTCATTGTTGGTGTAATTGACAGTGGAGTTTGGCCAGAGTCAGAGAGCTTCAATGATGAAGGATTAGGACCTGTGCCAGCTAAATTCAGAGGAGAGTGTGTTACTGGTCAGAATTTTACATTGGCCAACTGCAACAGAAAAATCATAGGCTCTCGCTTCTATTATCATGGATTTGAAGTAGAAAATGGGCCACTTGAGTCCTTTGCACCTCTTCCTTTCTTCAGATCAGCTCGAGATGCTGATGGACATGGGAGTCACACTGCCTCCACGATAGCTGGATCCACAGTAACTAATGTCAGCTTCTTGGGAATGGCCACAGGAACTGCAAGAGGCGGTGCAGAAAGTGCCAGACTTGCTATCTACAAGGCATGTTGGTTCGGCTTGTGTAGTGATGCAGACCTTCTTTCAGCTCTGGATGATGCCATTGGCGATGGTGTCGATATTCTGTCCCTTTCCCTTGGCCCTGATCCTCCTCAGCCAACATATTTTGAAGATGCAGTCTCCATTGGAGCTTTCCATGCATTCCAGAAAGGAATACTTGTTTCTGCATCAGCAGGGAACTCTGGTTTCCCCAGTACTGCATGCAATGTAGCTCCCTGGATTCTCACTGTTGCTGCAAGCACTTTGGATAGAGAATTCCATTCAAACGTTTATCTGGGAAATTCACAAATACTAAAGGGTTCCTCTTTAAACCCACTGAAGATGGATAAGTCTTACAGTTTGATTGCTGCAAGTGTTGCAGCTGCCCCTGGAGTCACAGCAAAGAATGCAAGCTTCTGCAAGGACAATACTCTAAATGCAAGCTTAATTAAGGGAAAAATCGTTGTGTGCACCTTTGAGACATTCACCGACAACCGAAGGGAAAAAAGTATAGTTGTAAGACAAGGTGGTGGTGTAGGAATGATTCTTGTGGATCCATTTCTCAAAGATGTTGGCTTTGAGTTTGTCATCCCGGCCACCCTAATTGGTCAAGAAGAAGCAGCACAGCTTCAAGCATACATGACAACAGAGAAGTTCCCAGTTGCTAGAATCTCACAAACGACAACAATTCTGAAAACTAAACCTGCACCTGAGATGGCAGTGTTCTCCTCCATGGGGCCAAATATCATAACCCCAGACATTATCAAACCAGATATTACAGGACCTGGGGTGAATATCTTAGCAGCATGGTCTCCGGTCTCAACTACACCCACAGCAGAAAGGTCTGTCAATTATAACATCATTTCTGGCACCTCGATGTCTTGTCCACATGTATCTGCAGTTGCAGCAACTTTGAAATCATACCGACCTTCCTGGAGTCCAGCAGCCATAATGTCTGCAATAATGACAACATACAACAACAAACGCCCTATTGGGAGAGATCCAAATGGCACCCCTACCACACCTTTTGACTACGGATCTGGACACATTAACCCAGTTGCAGCAATTGATCCTGGACTTGTATATGATTTTGATTCCCATGACATAATCGACTTTCTCTGCAGCACTGGGGCTAGCACTCTGCAACTGAAAAACCTCACGGGTAATCTAGTTTATTGCCAGAAGCCTTCTATTCCTTCCTACAATTTTAACTACCCTTCCATTGGCGTGTCAAAAATGAGTGGAAGGCTATCTGTTCAGCGTACAGTTACTTATTACGGCAAAGGCCCAACGGTATATGCTGCATATGTAGACTACCCAGCAGGTGTAAATGTTACAGTAACACCAGCTAAACTCAAGTTTACAAATACCGGGGAAAAGATGTCTTTCAGTGTTGATTTCACCCCCCTCAAGAATAGTAATGGAAGCTTTGTGTTTGGAGCTCTGACATGGAGTAATGGTATTCAGAATGTTAGGAGTCCTATTGGTCTTAATGTGCTTTCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

759

Amino Acids

80.95

Weight (kDa)

6.63

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	34 - 110	1.6e-15	Peptidase inhibitor I9
Peptidase_S8	PF00082	136 - 604	4.6e-42	Subtilase family
PA	PF02225	391 - 467	1.8e-07	PA domain
fn3_6	PF17766	659 - 752	1.3e-27	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34560 AT2G34560
fragaria_vesca	FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g05520 FvH4_3g24600
malus_domestica	MD05G1283700.v1.1 MD10G1261900.v1.1 MD11G1161400.v1.1 MD17G1012100.v1.1
prunus_persica	Prupe.4G080800_v2.0.a1 Prupe.4G080800_v2.0.a1 Prupe.6G127100_v2.0.a1
pyrus_communis	pycom05g26280 pycom07g21360 pycom10g21820 pycom11g13380
rosa_chinensis	RchiOBHm_Chr5g0014221 RchiOBHm_Chr5g0044151
rosa_laevigata	RLG00000032091 RLG00000034247
rosa_multiflora	Rmu_sc0000939.1_g000032 Rmu_sc0014980.1_g000003 Rmu_ssc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036900 Rroxscaffold_1G00062360
rosa_rugosa	Rorug05G0016300 Rorug05G0210900 Rorug05G0211000
rosa_samantha	Rh5AG295800 Rh5BG303600 Rh5CG119300 Rh5CG330600 Rh5DG312400
rosa_wichuraiana	Rw5G009640 Rw5G027350 Rw5G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1626
AarI	CACCTGC	1 cut(s)	2084
AasI	GACNNNNNNGTC	1 cut(s)	663
Acc36I	ACCTGC	2 cut(s)	1483, 2084
AccB1I	GGYRCC	3 cut(s)	117, 1640, 1781
AccI	GTMKAC	2 cut(s)	363, 2082
AciI	CCGC	1 cut(s)	744
AclI	AACGTT	1 cut(s)	1059
AclWI	GGATC	8 cut(s)	684, 697, 872, 1319, 1332, 1766, 1816, 1835
AcoI	YGGCCR	4 cut(s)	443, 534, 723, 1365
AcsI	RAATTY	4 cut(s)	494, 523, 1046, 1072
AcuI	CTGAAG	3 cut(s)	159, 616, 1130
AfaI	GTAC	3 cut(s)	190, 988, 2035
AfiI	CCNNNNNNNGG	2 cut(s)	1506, 1994
AflIII	ACRYGT	1 cut(s)	1660
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	7 cut(s)	463, 587, 902, 1056, 1403, 1687, 2274
AjnI	CCWGG	6 cut(s)	344, 1007, 1159, 1555, 1703, 1843
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
Alw21I	GWGCWC	3 cut(s)	335, 1244, 2215
Alw26I	GTCTC	4 cut(s)	916, 1244, 1587, 1594
Alw44I	GTGCAC	1 cut(s)	1240
AlwI	GGATC	8 cut(s)	684, 697, 872, 1319, 1332, 1766, 1816, 1835
AlwNI	CAGNNNCTG	2 cut(s)	734, 1556
Ama87I	CYCGRG	1 cut(s)	642
AoxI	GGCC	9 cut(s)	69, 443, 534, 599, 723, 871, 1365, 1508, 2056
ApaLI	GTGCAC	1 cut(s)	1240
ApoI	RAATTY	4 cut(s)	494, 523, 1046, 1072
ArsI	GACNNNNNNTTYG	2 cut(s)	396, 428
AsiGI	ACCGGT	1 cut(s)	191
AspS9I	GGNCC	7 cut(s)	70, 479, 599, 872, 1508, 1553, 2057
AsuC2I	CCSGG	2 cut(s)	1364, 2143
AsuHPI	GGTGA	4 cut(s)	172, 1249, 1573, 2164
AsuNHI	GCTAGC	1 cut(s)	1904
AvaI	CYCGRG	1 cut(s)	642
AvaII	GGWCC	2 cut(s)	479, 1553
BaeGI	GKGCMC	2 cut(s)	120, 1244
BalI	TGGCCA	3 cut(s)	445, 536, 725
BamHI	GGATCC	2 cut(s)	689, 1324
BanI	GGYRCC	3 cut(s)	117, 1640, 1781
BanII	GRGCYC	1 cut(s)	2215
Bbv12I	GWGCWC	3 cut(s)	335, 1244, 2215
BbvCI	CCTCAGC	1 cut(s)	885
BccI	CCATC	4 cut(s)	647, 836, 1108, 1480
BceAI	ACGGC	1 cut(s)	2065
BciT130I	CCWGG	6 cut(s)	346, 1009, 1161, 1557, 1705, 1845
BcnI	CCSGG	2 cut(s)	1364, 2143
BcoDI	GTCTC	4 cut(s)	916, 1244, 1587, 1594
BfaI	CTAG	4 cut(s)	356, 1437, 1905, 1940
BfmI	CTRYAG	2 cut(s)	1668, 1891
BfuAI	ACCTGC	2 cut(s)	1483, 2084
BlpI	GCTNAGC	1 cut(s)	270
BmcAI	AGTACT	1 cut(s)	988
Bme1390I	CCNGG	8 cut(s)	346, 1009, 1161, 1364, 1557, 1705, 1845, 2143
Bme18I	GGWCC	2 cut(s)	479, 1553
BmeT110I	CYCGRG	1 cut(s)	642
BmgT120I	GGNCC	7 cut(s)	70, 479, 599, 872, 1508, 1553, 2057
BmiI	GGNNCC	9 cut(s)	79, 119, 400, 691, 1093, 1326, 1509, 1642, 1783
BmrFI	CCNGG	8 cut(s)	346, 1009, 1161, 1364, 1557, 1705, 1845, 2143
BmrI	ACTGGG	4 cut(s)	978, 1424, 1820, 1908
BmsI	GCATC	5 cut(s)	637, 793, 820, 895, 968
BmtI	GCTAGC	1 cut(s)	1908
BmuI	ACTGGG	4 cut(s)	978, 1424, 1820, 1908
BpmI	CTGGAG	2 cut(s)	1182, 1726
Bpu10I	CCTNAGC	1 cut(s)	885
Bpu1102I	GCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	3 cut(s)	626, 2111, 2165
BpuMI	CCSGG	2 cut(s)	1364, 2143
BsaI	GGTCTC	2 cut(s)	1587, 1594
BsaJI	CCNNGG	9 cut(s)	73, 235, 345, 868, 1007, 1159, 1503, 1556, 2142
BsaWI	WCCGGW	2 cut(s)	191, 1585
BsaXI	ACNNNNNCTCC	6 cut(s)	495, 525, 659, 689, 2215, 2245
Bsc4I	CCNNNNNNNGG	2 cut(s)	1506, 1994
Bse118I	RCCGGY	2 cut(s)	182, 191
Bse1I	ACTGG	5 cut(s)	520, 984, 1430, 1826, 1903
Bse3DI	GCAATG	1 cut(s)	1003
BseBI	CCWGG	6 cut(s)	346, 1009, 1161, 1557, 1705, 1845
BseDI	CCNNGG	9 cut(s)	73, 235, 345, 868, 1007, 1159, 1503, 1556, 2142
BseGI	GGATG	2 cut(s)	832, 1359
BseLI	CCNNNNNNNGG	2 cut(s)	1506, 1994
BseMI	GCAATG	1 cut(s)	1003
BseMII	CTCAG	5 cut(s)	258, 284, 320, 899, 1473
BseNI	ACTGG	5 cut(s)	520, 984, 1430, 1826, 1903
BseRI	GAGGAG	3 cut(s)	516, 873, 1489
BseSI	GKGCMC	2 cut(s)	120, 1244
BseYI	CCCAGC	1 cut(s)	2089
BsgI	GTGCAG	2 cut(s)	768, 1461
BshFI	GGCC	9 cut(s)	71, 445, 536, 601, 725, 873, 1367, 1510, 2058
BshNI	GGYRCC	3 cut(s)	117, 1640, 1781
BshTI	ACCGGT	1 cut(s)	191
BsiHKAI	GWGCWC	3 cut(s)	335, 1244, 2215
BsiHKCI	CYCGRG	1 cut(s)	642
BsiSI	CCGG	5 cut(s)	183, 192, 1364, 1586, 2142
BslFI	GGGAC	1 cut(s)	844
BslI	CCNNNNNNNGG	2 cut(s)	1506, 1994
BsmAI	GTCTC	4 cut(s)	916, 1244, 1587, 1594
BsmFI	GGGAC	1 cut(s)	844
BsmI	GAATGC	2 cut(s)	932, 1183
BsnI	GGCC	9 cut(s)	71, 445, 536, 601, 725, 873, 1367, 1510, 2058
Bso31I	GGTCTC	2 cut(s)	1587, 1594
BsoBI	CYCGRG	1 cut(s)	642
Bsp1286I	GDGCHC	4 cut(s)	120, 335, 1244, 2215
Bsp143I	GATC	8 cut(s)	262, 635, 689, 877, 1324, 1771, 1808, 1840
Bsp1720I	GCTNAGC	1 cut(s)	270
Bsp19I	CCATGG	2 cut(s)	73, 1503
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	9 cut(s)	71, 445, 536, 601, 725, 873, 1367, 1510, 2058
BspCNI	CTCAG	5 cut(s)	257, 283, 321, 898, 1474
BspLI	GGNNCC	9 cut(s)	79, 119, 400, 691, 1093, 1326, 1509, 1642, 1783
BspMAI	CTGCAG	2 cut(s)	1672, 1895
BspMI	ACCTGC	2 cut(s)	1483, 2084
BspOI	GCTAGC	1 cut(s)	1908
BspPI	GGATC	8 cut(s)	684, 697, 872, 1319, 1332, 1766, 1816, 1835
BspT107I	GGYRCC	3 cut(s)	117, 1640, 1781
BspTNI	GGTCTC	2 cut(s)	1587, 1594
BsrDI	GCAATG	1 cut(s)	1003
BsrFI	RCCGGY	2 cut(s)	182, 191
BsrI	ACTGG	5 cut(s)	520, 984, 1430, 1826, 1903
BssAI	RCCGGY	2 cut(s)	182, 191
BssECI	CCNNGG	9 cut(s)	73, 235, 345, 868, 1007, 1159, 1503, 1556, 2142
BssMI	GATC	8 cut(s)	262, 635, 689, 877, 1324, 1771, 1808, 1840
BssT1I	CCWWGG	4 cut(s)	73, 235, 868, 1503
Bst2UI	CCWGG	6 cut(s)	346, 1009, 1161, 1557, 1705, 1845
Bst4CI	ACNGT	8 cut(s)	224, 434, 697, 1021, 1130, 2038, 2065, 2110
Bst6I	CTCTTC	2 cut(s)	48, 627
BstAPI	GCANNNNNTGC	3 cut(s)	755, 1148, 1178
BstC8I	GCNNGC	6 cut(s)	489, 994, 1030, 1183, 1213, 1906
BstDEI	CTNAG	7 cut(s)	56, 244, 270, 329, 885, 1482, 1570
BstDSI	CCRYGG	2 cut(s)	73, 1503
BstF5I	GGATG	2 cut(s)	832, 1359
BstKTI	GATC	8 cut(s)	265, 638, 692, 880, 1327, 1774, 1811, 1843
BstMAI	GTCTC	4 cut(s)	916, 1244, 1587, 1594
BstMBI	GATC	8 cut(s)	262, 635, 689, 877, 1324, 1771, 1808, 1840
BstMWI	GCNNNNNNNGC	9 cut(s)	77, 124, 647, 755, 764, 929, 1148, 1178, 1676
BstNI	CCWGG	6 cut(s)	346, 1009, 1161, 1557, 1705, 1845
BstNSI	RCATGY	3 cut(s)	783, 996, 1664
BstSCI	CCNGG	8 cut(s)	344, 1007, 1159, 1362, 1555, 1703, 1843, 2141
BstSFI	CTRYAG	2 cut(s)	1668, 1891
BstSLI	GKGCMC	2 cut(s)	120, 1244
BstX2I	RGATCY	4 cut(s)	689, 1324, 1771, 1808
BstYI	RGATCY	4 cut(s)	689, 1324, 1771, 1808
BsuRI	GGCC	9 cut(s)	71, 445, 536, 601, 725, 873, 1367, 1510, 2058
BtgI	CCRYGG	2 cut(s)	73, 1503
BtgZI	GCGATG	1 cut(s)	855
BtsCI	GGATG	2 cut(s)	832, 1359
BtsI	GCAGTG	3 cut(s)	81, 669, 1497
BtsIMutI	CAGTG	8 cut(s)	81, 439, 669, 1017, 1106, 1497, 1896, 2167
BveI	ACCTGC	2 cut(s)	1483, 2084
Cac8I	GCNNGC	6 cut(s)	489, 994, 1030, 1183, 1213, 1906
CaiI	CAGNNNCTG	2 cut(s)	734, 1556
Cfr10I	RCCGGY	2 cut(s)	182, 191
Cfr13I	GGNCC	7 cut(s)	70, 479, 599, 872, 1508, 1553, 2057
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	189, 987, 2034
CspAI	ACCGGT	1 cut(s)	191
CspCI	CAANNNNNGTGG	4 cut(s)	1357, 1392, 1780, 1815
CviQI	GTAC	3 cut(s)	189, 987, 2034
DdeI	CTNAG	7 cut(s)	56, 244, 270, 329, 885, 1482, 1570
DpnI	GATC	8 cut(s)	264, 637, 691, 879, 1326, 1773, 1810, 1842
DpnII	GATC	8 cut(s)	262, 635, 689, 877, 1324, 1771, 1808, 1840
DraI	TTTAAA	1 cut(s)	1101
DrdI	GACNNNNNNGTC	1 cut(s)	663
DseDI	GACNNNNNNGTC	1 cut(s)	663
EaeI	YGGCCR	4 cut(s)	443, 534, 723, 1365
Eam1104I	CTCTTC	2 cut(s)	48, 627
EarI	CTCTTC	2 cut(s)	48, 627
Ecl136II	GAGCTC	1 cut(s)	2213
Eco130I	CCWWGG	4 cut(s)	73, 235, 868, 1503
Eco24I	GRGCYC	1 cut(s)	2215
Eco31I	GGTCTC	2 cut(s)	1587, 1594
Eco47I	GGWCC	2 cut(s)	479, 1553
Eco53kI	GAGCTC	1 cut(s)	2213
Eco57I	CTGAAG	3 cut(s)	159, 616, 1130
Eco88I	CYCGRG	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	2213
EcoO109I	RGGNCCY	2 cut(s)	479, 1553
EcoRI	GAATTC	1 cut(s)	1046
EcoRII	CCWGG	6 cut(s)	344, 1007, 1159, 1555, 1703, 1843
EcoT14I	CCWWGG	4 cut(s)	73, 235, 868, 1503
EcoT22I	ATGCAT	1 cut(s)	934
EcoT38I	GRGCYC	1 cut(s)	2215
ErhI	CCWWGG	4 cut(s)	73, 235, 868, 1503
FalI	AAGNNNNNCTT	4 cut(s)	195, 227, 933, 965
FaqI	GGGAC	1 cut(s)	844
FauNDI	CATATG	1 cut(s)	2077
FblI	GTMKAC	2 cut(s)	363, 2082
FokI	GGATG	2 cut(s)	839, 1346
FriOI	GRGCYC	1 cut(s)	2215
FspBI	CTAG	4 cut(s)	356, 1437, 1905, 1940
GsaI	CCCAGC	1 cut(s)	2093
GsuI	CTGGAG	2 cut(s)	1182, 1726
HaeIII	GGCC	9 cut(s)	71, 445, 536, 601, 725, 873, 1367, 1510, 2058
HapII	CCGG	5 cut(s)	183, 192, 1364, 1586, 2142
HgaI	GACGC	1 cut(s)	374
HindIII	AAGCTT	4 cut(s)	251, 1183, 1213, 2197
HpaII	CCGG	5 cut(s)	183, 192, 1364, 1586, 2142
HphI	GGTGA	4 cut(s)	172, 1249, 1573, 2164
Hpy166II	GTNNAC	7 cut(s)	109, 197, 364, 1242, 1658, 2083, 2133
Hpy188I	TCNGA	9 cut(s)	139, 152, 454, 500, 522, 635, 1464, 2217, 2238
Hpy188III	TCNNGA	7 cut(s)	19, 644, 824, 937, 1382, 1812, 2182
Hpy8I	GTNNAC	7 cut(s)	109, 197, 364, 1242, 1658, 2083, 2133
HpyAV	CCTTC	8 cut(s)	464, 821, 1263, 1710, 1968, 1977, 1998, 2010
HpyCH4III	ACNGT	8 cut(s)	224, 434, 697, 1021, 1130, 2038, 2065, 2110
HpyCH4IV	ACGT	1 cut(s)	1059
HpyF10VI	GCNNNNNNNGC	9 cut(s)	77, 124, 647, 755, 764, 929, 1148, 1178, 1676
HpyF3I	CTNAG	7 cut(s)	56, 244, 270, 329, 885, 1482, 1570
HpySE526I	ACGT	1 cut(s)	1059
Kzo9I	GATC	8 cut(s)	262, 635, 689, 877, 1324, 1771, 1808, 1840
LmnI	GCTCC	4 cut(s)	77, 920, 1009, 2210
LweI	GCATC	5 cut(s)	637, 793, 820, 895, 968
MaeI	CTAG	4 cut(s)	356, 1437, 1905, 1940
MaeII	ACGT	1 cut(s)	1059
MaeIII	GTNAC	8 cut(s)	178, 511, 665, 697, 1165, 2038, 2104, 2110
MalI	GATC	8 cut(s)	264, 637, 691, 879, 1326, 1773, 1810, 1842
MboI	GATC	8 cut(s)	262, 635, 689, 877, 1324, 1771, 1808, 1840
MboII	GAAGA	6 cut(s)	35, 614, 622, 914, 1123, 1397
MfeI	CAATTG	1 cut(s)	1836
MflI	RGATCY	4 cut(s)	689, 1324, 1771, 1808
MhlI	GDGCHC	4 cut(s)	120, 335, 1244, 2215
MlsI	TGGCCA	3 cut(s)	445, 536, 725
MluNI	TGGCCA	3 cut(s)	445, 536, 725
MlyI	GAGTC	6 cut(s)	458, 617, 673, 1173, 1717, 2257
Mox20I	TGGCCA	3 cut(s)	445, 536, 725
Mph1103I	ATGCAT	1 cut(s)	934
MscI	TGGCCA	3 cut(s)	445, 536, 725
MseI	TTAA	7 cut(s)	213, 1100, 1217, 1221, 1821, 1980, 2262
MslI	CAYNNNNRTG	3 cut(s)	302, 1646, 1997
Msp20I	TGGCCA	3 cut(s)	445, 536, 725
MspA1I	CMGCKG	1 cut(s)	1154
MspI	CCGG	5 cut(s)	183, 192, 1364, 1586, 2142
MspR9I	CCNGG	8 cut(s)	346, 1009, 1161, 1364, 1557, 1705, 1845, 2143
MunI	CAATTG	1 cut(s)	1836
Mva1269I	GAATGC	2 cut(s)	932, 1183
MvaI	CCWGG	6 cut(s)	346, 1009, 1161, 1557, 1705, 1845
MwoI	GCNNNNNNNGC	9 cut(s)	77, 124, 647, 755, 764, 929, 1148, 1178, 1676
NciI	CCSGG	2 cut(s)	1364, 2143
NcoI	CCATGG	2 cut(s)	73, 1503
NdeI	CATATG	1 cut(s)	2077
NdeII	GATC	8 cut(s)	262, 635, 689, 877, 1324, 1771, 1808, 1840
NheI	GCTAGC	1 cut(s)	1904
NlaIV	GGNNCC	9 cut(s)	79, 119, 400, 691, 1093, 1326, 1509, 1642, 1783
NmuCI	GTSAC	3 cut(s)	178, 665, 1165
NsiI	ATGCAT	1 cut(s)	934
NspI	RCATGY	3 cut(s)	783, 996, 1664
PacI	TTAATTAA	1 cut(s)	1221
PaeI	GCATGC	1 cut(s)	996
PaeR7I	CTCGAG	1 cut(s)	642
PaqCI	CACCTGC	1 cut(s)	2084
PciI	ACATGT	1 cut(s)	1660
PctI	GAATGC	2 cut(s)	932, 1183
PfeI	GAWTC	7 cut(s)	140, 166, 290, 1012, 1315, 1440, 1865
PfoI	TCCNGGA	2 cut(s)	1703, 1843
PinAI	ACCGGT	1 cut(s)	191
PleI	GAGTC	6 cut(s)	457, 616, 672, 1172, 1716, 2256
PpsI	GAGTC	6 cut(s)	457, 616, 672, 1172, 1716, 2256
PpuMI	RGGWCCY	2 cut(s)	479, 1553
PscI	ACATGT	1 cut(s)	1660
PsiI	TTATAA	1 cut(s)	1626
Psp124BI	GAGCTC	1 cut(s)	2215
Psp1406I	AACGTT	1 cut(s)	1059
Psp5II	RGGWCCY	2 cut(s)	479, 1553
Psp6I	CCWGG	6 cut(s)	344, 1007, 1159, 1555, 1703, 1843
PspFI	CCCAGC	1 cut(s)	2089
PspGI	CCWGG	6 cut(s)	344, 1007, 1159, 1555, 1703, 1843
PspN4I	GGNNCC	9 cut(s)	79, 119, 400, 691, 1093, 1326, 1509, 1642, 1783
PspPI	GGNCC	7 cut(s)	70, 479, 599, 872, 1508, 1553, 2057
PspPPI	RGGWCCY	2 cut(s)	479, 1553
PstI	CTGCAG	2 cut(s)	1672, 1895
PstNI	CAGNNNCTG	2 cut(s)	734, 1556
PsuI	RGATCY	4 cut(s)	689, 1324, 1771, 1808
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	3 cut(s)	190, 988, 2035
RsaNI	GTAC	3 cut(s)	189, 987, 2034
RseI	CAYNNNNRTG	3 cut(s)	302, 1646, 1997
SacI	GAGCTC	1 cut(s)	2215
SaqAI	TTAA	7 cut(s)	213, 1100, 1217, 1221, 1821, 1980, 2262
Sau3AI	GATC	8 cut(s)	262, 635, 689, 877, 1324, 1771, 1808, 1840
Sau96I	GGNCC	7 cut(s)	70, 479, 599, 872, 1508, 1553, 2057
ScaI	AGTACT	1 cut(s)	988
SchI	GAGTC	6 cut(s)	458, 617, 673, 1173, 1717, 2257
ScrFI	CCNGG	8 cut(s)	346, 1009, 1161, 1364, 1557, 1705, 1845, 2143
SduI	GDGCHC	4 cut(s)	120, 335, 1244, 2215
SfaNI	GCATC	5 cut(s)	637, 793, 820, 895, 968
SfcI	CTRYAG	2 cut(s)	1668, 1891
Sfr274I	CTCGAG	1 cut(s)	642
SinI	GGWCC	2 cut(s)	479, 1553
SlaI	CTCGAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	3 cut(s)	302, 1646, 1997
SmlI	CTYRAG	4 cut(s)	605, 642, 2126, 2180
SmoI	CTYRAG	4 cut(s)	605, 642, 2126, 2180
SphI	GCATGC	1 cut(s)	996
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	4 cut(s)	356, 1437, 1905, 1940
SstI	GAGCTC	1 cut(s)	2215
StyD4I	CCNGG	8 cut(s)	344, 1007, 1159, 1362, 1555, 1703, 1843, 2141
StyI	CCWWGG	4 cut(s)	73, 235, 868, 1503
TaaI	ACNGT	8 cut(s)	224, 434, 697, 1021, 1130, 2038, 2065, 2110
TaiI	ACGT	1 cut(s)	1062
TaqI	TCGA	4 cut(s)	643, 849, 1646, 1881
TaqII	GACCGA	1 cut(s)	283
TatI	WGTACW	1 cut(s)	986
TfiI	GAWTC	7 cut(s)	140, 166, 290, 1012, 1315, 1440, 1865
Tru1I	TTAA	7 cut(s)	213, 1100, 1217, 1221, 1821, 1980, 2262
Tru9I	TTAA	7 cut(s)	213, 1100, 1217, 1221, 1821, 1980, 2262
TscAI	CASTG	8 cut(s)	88, 439, 676, 1024, 1113, 1497, 1903, 2167
TseFI	GTSAC	3 cut(s)	178, 665, 1165
Tsp45I	GTSAC	3 cut(s)	178, 665, 1165
TspDTI	ATGAA	1 cut(s)	483
TspGWI	ACGGA	1 cut(s)	1821
TspRI	CASTG	8 cut(s)	88, 439, 676, 1024, 1113, 1497, 1903, 2167
VneI	GTGCAC	1 cut(s)	1240
VpaK11BI	GGWCC	2 cut(s)	479, 1553
XapI	RAATTY	4 cut(s)	494, 523, 1046, 1072
XceI	RCATGY	3 cut(s)	783, 996, 1664
XhoI	CTCGAG	1 cut(s)	642
XmiI	GTMKAC	2 cut(s)	363, 2082
XspI	CTAG	4 cut(s)	356, 1437, 1905, 1940
ZrmI	AGTACT	1 cut(s)	988
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.